Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45490 171 / 9e-50 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT4G19060 163 / 2e-46 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G45440 155 / 9e-44 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G50950 109 / 1e-25 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT3G14470 83 / 7e-17 NB-ARC domain-containing disease resistance protein (.1) AT3G46530 81 / 5e-16 RPP13 RECOGNITION OF PERONOSPORA PARASITICA 13, NB-ARC domain-containing disease resistance protein (.1) AT3G07040 79 / 1e-15 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT1G59124 74 / 5e-14 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58807 74 / 5e-14 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G50180 74 / 5e-14 NB-ARC domain-containing disease resistance protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G200800 [exp] 100 / 1e-22 AT3G14460 509 / 7e-157 LRR and NB-ARC domains-containing disease resistance protein (.1) Potri.015G121800 [exp] 96 / 5e-21 AT3G14470 377 / 3e-114 NB-ARC domain-containing disease resistance protein (.1) Potri.004G196100 [exp] 94 / 3e-20 AT3G14470 647 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T126506 [exp] 93 / 5e-20 AT3G14470 575 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.013G056000 [exp] 92 / 5e-20 AT3G50950 90 / 1e-18 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) Potri.005G119800 [exp] 92 / 7e-20 AT3G50950 1005 / 0.0 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) Potri.005G007001 [exp] 92 / 8e-20 AT3G14470 647 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T126706 [exp] 91 / 1e-19 AT3G14470 565 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G200500 [exp] 91 / 2e-19 AT3G14470 594 / 0.0 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016316 [exp] 103 / 1e-23 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1) Lus10039509 [exp] 102 / 4e-23 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10002736 [exp] 96 / 1e-21 AT3G14470 317 / 1e-98 NB-ARC domain-containing disease resistance protein (.1) Lus10024173 [exp] 87 / 3e-18 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10014922 [exp] 86 / 7e-18 AT3G07040 523 / 1e-171 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10022351 [exp] 84 / 4e-17 AT3G14470 369 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Lus10006794 [exp] 83 / 4e-17 AT3G14470 264 / 2e-78 NB-ARC domain-containing disease resistance protein (.1) Lus10011278 [exp] 82 / 2e-16 AT3G14470 356 / 1e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10039540 [exp] 82 / 2e-16 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10007261 [exp] 81 / 5e-16 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.011G040800.1 pacid=42781074 polypeptide=Potri.011G040800.1.p locus=Potri.011G040800 ID=Potri.011G040800.1.v4.1 annot-version=v4.1 ATGGATGATGAAGTTGGAAGTTATTTGCTGAATCAATTTAGTGGTGGTCTTCAATCTTCCAAAGTTAGCTGGAAAAGAGATCTTCAGGAACTGGAGAAAC TGATTCGACGAAATATTGAGAACTCACCTGCTAAAGAGAAGCCATCACTCAGGGAAAAGCTCTACCGCCTCAACAACATTTTGGTGGAATGTCAGGCAGC ATCATTCTTATCTCGTGAAGGAATAATTTCCCTGTGGAGAATCAGGAATACTTTGAAAGAAATCAAGGAGGAGCTTAAATCGAAAGACTCTATTACAATT TCCTCAAATGGAAACTTTAGTCCACAACGGGATGATCAGGGGAACTCATCAAATGTTAGAGACACTGGCCGCCAGAGTCATCAATCTGTAAGTCCGCTGG TGGTTCATGGCTTCGATGATGAAATAACGTCACTGGTGAAACTGCTTGTTTACGAAAGAAGTAAAGAAAAGTTCAGTGCTGTCGGAATCACAGGGATGGC TGGTGCCGGAAAAACCACACTATGCCAAGAAATTATAAAGAGAGAAGAAGTGAAGAAGCACTTTGTTCCTAGGATTTTGGTAAGCATGTCGAAAAAGCCT GATGGGAACAAAGATGCCAAGATAGCTCTTGTGGAAAGAATACTGCTTTCACTTGGAGTTGAAGAAAATACCATCCAATCCGTTTCTAACAGCGGCCTTT CAGCTCTGATCTGTGCACTTCATGTGCAACTGATGGGCAAGAAGTATATGATTGTCCTCGATGATGCTCAGGAAGGAGATACGTGGTTTGAAAACCTGTA TTCTCCTTTACCTGGTAAGGTTAAATGGGAGCAAAGCCTTGCGTATGGATTGCCGAAAGGCTATGGAGGAACAGTTATTGTCACGAGTAGGAATAAGGAC TTGGCAAAGAAGATGGTCGGGGAGGAAAATGTACATCCCGTTCTGCCTCTTGCAGATAAAGAGAAATGCTGGCTTATTTTCAAAGATGCTGTTGAGCAAG ATGGGACACTATTCAATCCCCCAAATGTGGAATTGGAGGATCTAAAAAAGGAGATCATAAGAAAGTGTTCTGGCCTTCCATTAGCAGCAAGAGTGCTTGG GGAAATTATGAAAGAAAAAATGGAAGAGGCACCTGTGCCTAATTGTCATACTGTGACAGTTCATCCACAGTTATCAACTGACAACAATTCGAATGTTTAA
AA sequence Show only first row Show all	>Potri.011G040800.1 pacid=42781074 polypeptide=Potri.011G040800.1.p locus=Potri.011G040800 ID=Potri.011G040800.1.v4.1 annot-version=v4.1 MDDEVGSYLLNQFSGGLQSSKVSWKRDLQELEKLIRRNIENSPAKEKPSLREKLYRLNNILVECQAASFLSREGIISLWRIRNTLKEIKEELKSKDSITI SSNGNFSPQRDDQGNSSNVRDTGRQSHQSVSPLVVHGFDDEITSLVKLLVYERSKEKFSAVGITGMAGAGKTTLCQEIIKREEVKKHFVPRILVSMSKKP DGNKDAKIALVERILLSLGVEENTIQSVSNSGLSALICALHVQLMGKKYMIVLDDAQEGDTWFENLYSPLPGKVKWEQSLAYGLPKGYGGTVIVTSRNKD LAKKMVGEENVHPVLPLADKEKCWLIFKDAVEQDGTLFNPPNVELEDLKKEIIRKCSGLPLAARVLGEIMKEKMEEAPVPNCHTVTVHPQLSTDNNSNV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45490			P-loop containing nucleoside t...		Potri.011G040800 [exp]	0	1
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Potri.001G294100 [exp]	7.28	0.8603
AT5G06790			unknown protein		Potri.016G047800 [exp]	11.83	0.8539
					Potri.008G204750 [exp]	13.85	0.8377
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Potri.004G088700 [exp]	15.49	0.8501
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Potri.004G150400 [exp]	20.78	0.8427	Pt-CLB6.1
AT4G34880			Amidase family protein (.1)		Potri.009G130400 [exp]	24.39	0.7711
AT5G11290			Plant protein of unknown funct...		Potri.003G208400 [exp]	29.84	0.8406
					Potri.012G120768 [exp]	31.63	0.8357
					Potri.012G121044 [exp]	32.12	0.8414
AT1G24430			HXXXD-type acyl-transferase fa...		Potri.010G053800 [exp]	34.42	0.8455

Compare expression of checked genes

Potri.011G040800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.