Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-NSF.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04910 1179 / 0 NSF N-ethylmaleimide sensitive factor, AAA-type ATPase family protein (.1) AT3G53230 174 / 3e-45 ATPase, AAA-type, CDC48 protein (.1) AT3G09840 172 / 1e-44 ATCDC48, CDC48A, CDC48 cell division cycle 48 (.1) AT5G03340 170 / 4e-44 ATPase, AAA-type, CDC48 protein (.1) AT3G56690 156 / 3e-39 CIP111 Cam interacting protein 111 (.1) AT5G19990 144 / 5e-37 ATSUG1, RPT6A regulatory particle triple-A ATPase 6A (.1) AT5G20000 144 / 5e-37 RPT6A AAA-type ATPase family protein (.1) AT1G45000 142 / 1e-36 AAA-type ATPase family protein (.1.2) AT5G43010 142 / 2e-36 RPT4A regulatory particle triple-A ATPase 4A (.1) AT1G05910 145 / 8e-36 cell division cycle protein 48-related / CDC48-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G043900 [exp] 1365 / 0 AT4G04910 1196 / 0.0 N-ethylmaleimide sensitive factor, AAA-type ATPase family protein (.1) Potri.017G108200 [exp] 175 / 8e-46 AT5G03340 1311 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.012G088200 [exp] 174 / 2e-45 AT5G03340 1459 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.015G080600 [exp] 171 / 3e-44 AT5G03340 1455 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.006G125500 [exp] 171 / 4e-44 AT5G03340 1496 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.016G091600 [exp] 170 / 5e-44 AT3G53230 1484 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.008G144100 [exp] 144 / 6e-37 AT5G19990 741 / 0.0 regulatory particle triple-A ATPase 6A (.1) Potri.006G035000 [exp] 149 / 7e-37 AT3G56690 1080 / 0.0 Cam interacting protein 111 (.1) Potri.005G025100 [exp] 142 / 2e-36 AT3G05530 795 / 0.0 regulatory particle triple-A ATPase 5A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011177 [exp] 1169 / 0 AT4G04910 1204 / 0.0 N-ethylmaleimide sensitive factor, AAA-type ATPase family protein (.1) Lus10015440 [exp] 1162 / 0 AT4G04910 1200 / 0.0 N-ethylmaleimide sensitive factor, AAA-type ATPase family protein (.1) Lus10021442 [exp] 171 / 2e-44 AT5G03340 1520 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10021441 [exp] 171 / 3e-44 AT5G03340 1529 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016123 [exp] 170 / 8e-44 AT5G03340 1526 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016124 [exp] 169 / 2e-43 AT5G03340 1511 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10037385 [exp] 166 / 9e-43 AT5G03340 1501 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10023018 [exp] 157 / 1e-39 AT5G03340 1419 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10001402 [exp] 153 / 2e-39 AT3G53230 803 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10025576 [exp] 152 / 8e-38 AT1G05910 1557 / 0.0 cell division cycle protein 48-related / CDC48-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA) CL0332 [poplar] [flax] AcetylDC-like PF02359 [poplar] [flax] CDC48_N Cell division protein 48 (CDC48), N-terminal domain CL0402 [poplar] [flax] Cdc48_2-like PF02933 [poplar] [flax] CDC48_2 Cell division protein 48 (CDC48), domain 2 CL0023 [poplar] [flax] P-loop_NTPase PF07724 [poplar] [flax] AAA_2 AAA domain (Cdc48 subfamily)
Representative CDS sequence Show only first row Show all	>Potri.011G052800.3 pacid=42781265 polypeptide=Potri.011G052800.3.p locus=Potri.011G052800 ID=Potri.011G052800.3.v4.1 annot-version=v4.1 ATGGCGAGTCGGTTCGGTTTCCAATCGTCGACAATGATCGTGACGAACACACCGGGGGCAGATCTCGCACTCACAAACCTCGCTTACTGCTCACCCTCCG ATCTCCACAACTTCGCCGTCCCTGGAACCAAGCTCTTCTTAGCTTTAGTCGCTGACTCCTTCGTTCTATCTCTTTCTCCTCATGAAAATATTCGTACTGG CCAAATTGCGCTGAATTCGATTCAGAGAAGGCATGCGAGGGTTTCATCTGGTGATACGGTATCTGTGCGCAGGTTTATCCCTCCTGAAGATTTTAACCTT GCATTATTAACACTTGAGTTGGAATTTGTGAAGAAAGGGACAAAAAATGAACAGATTGATGCTGTTATTCTGGCCAACCAACTTAGGAAAAGGTTTGCTA AACAGGTTATGACATCGGGGCAAAAAGTAACATTTGAGTATCACGGAAACAATTACATATTTACAGTCACTCAAGCTGCTGTGGAGGGGCGAGAAGATTC TAAAGATGCTGAGAGAGGAATGATTTCAAGTGACACGTACATTGTCTTTGAAGCATCAAATTCTAGTGGCATAAAGATTGTCAATCAGCGTGAAGCTGCC AGTAGCAACATCTTTAGGCAAAAGGAGTTTAATCTTCAGTCACTAGGTATAGGTGGTTTGGGCGCAGAATTTGCAGATATATTTCGAAGAGCTTTTGCCT CTCGTGTTTTCCCACCTCACGTGACAAGCAAATTGGGGATCAAGCATGTAAAGGGTATGCTGCTTTATGGGCCTCCTGGCACTGGAAAAACTCTTATGGC TCGTCAAATTGGAAAAATGTTGAATGGGAGGGAGCCAAAGATTGTTAATGGCCCTGAAGTCCTAAGCAAATTTGTCGGCGAGACTGAAAAGAATGTTAGA GACCTGTTTGCTGATGCTGAAAATGATCAAAGGACCAATGGGGACCAAAGTGATTTGCATGTAATAATCTTTGATGAAATTGATGCCATATGCAAGTCAA GAGGATCAACTCGAGATGGTACTGGAGTCCATGATAGCATCGTGAACCAGCTTCTTACAAAGATAGATGGTGTGGAGTCCCTGAATAATGTTTTACTTAT TGGAATGACCAATCGAAAGGATTTGCTTGATGAAGCGCTTTTGAGGCCAGGACGATTGGAGGTTCAAGTTGAGATAAGCCTTCCTGATGAAAATGGTCGG CTGCAGATTCTTCAAATTCATACAAACAAGATGAAAGAGAATTCTTTTCTATCTCCCGATGTAAATCTTCAAGAGCTTGCTGCTCGTACAAAAAATTACA GTGGAGCAGAACTTGAAGGTGTAGTGAAAAGTGCAGTATCATTTGCTTTGAATCGACAACTAAGTCTAGATGATCTTACCAAGCCAGTAGATGAAGAGAG TATTAAAGTAACTATGGATGACTTTCTGCATGCACTCCATGACATTGTTCCAGCATTTGGAGCCTCCACTGATGACCTTGAACGATGCAGACTTAATGGC ATGGTGGACTGTGGTGATCGACACAAGCATATTTATCAGAGAGCTATGCTACTGGTGGAGCAAGTTAAAGTTAGCAAGGGAAGTCCAATGGTTACTTGCC TTCTGGAAGGCCCAAGTGGCAGTGGTAAAACTGCATTGGCAGCTACTGTTGGCATCGACAGTGATTTTCCATATGTCAAAATAATCTCAGCTGAAACAAT GATTGGTCTACAAGAGAGCACTAAATGCGCTCGGATTGTTAAGGTGTTTGAGGATGCGTACAAGTCTCCTTTGAGCATTATAATTCTTGATGACATTGAG AGATTATTGGAGTATGTTGCTATTGGGCCTCGCTTTTCAAATATAATTTCTCAGACATTGTTGGTACTCCTCAAACGTCTTCCTCCCAAGGGAAAGAGAC TTCTGGTGTTAGGGACAACAAGTGAAGTAAGCTTCTTGGATTCAGTTGGTATTTGTGATGCTTTCTCTGTTACTTACCTCCTCCCCACGTTGAAGGCAGA GGATGCAAAGAAGGTATTGAAACAACTCAATGTTTTTGCTGAAGATGACATCAGTGCTGCTGCAGAAGCCCTGGATGATATGACTATCAAGAAGCTCTAT ATGCTGATTGAGATGGCTGCCCAAGGAGAGCAAGGTGGGGATGCAGAGGCTATCTATTCCGGCAAAGAGAAGATTAAGATTGCACATTTTTACGATTGCT TTCAGGACATGGTGCGATTTTAG
AA sequence Show only first row Show all	>Potri.011G052800.3 pacid=42781265 polypeptide=Potri.011G052800.3.p locus=Potri.011G052800 ID=Potri.011G052800.3.v4.1 annot-version=v4.1 MASRFGFQSSTMIVTNTPGADLALTNLAYCSPSDLHNFAVPGTKLFLALVADSFVLSLSPHENIRTGQIALNSIQRRHARVSSGDTVSVRRFIPPEDFNL ALLTLELEFVKKGTKNEQIDAVILANQLRKRFAKQVMTSGQKVTFEYHGNNYIFTVTQAAVEGREDSKDAERGMISSDTYIVFEASNSSGIKIVNQREAA SSNIFRQKEFNLQSLGIGGLGAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGREPKIVNGPEVLSKFVGETEKNVR DLFADAENDQRTNGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDLLDEALLRPGRLEVQVEISLPDENGR LQILQIHTNKMKENSFLSPDVNLQELAARTKNYSGAELEGVVKSAVSFALNRQLSLDDLTKPVDEESIKVTMDDFLHALHDIVPAFGASTDDLERCRLNG MVDCGDRHKHIYQRAMLLVEQVKVSKGSPMVTCLLEGPSGSGKTALAATVGIDSDFPYVKIISAETMIGLQESTKCARIVKVFEDAYKSPLSIIILDDIE RLLEYVAIGPRFSNIISQTLLVLLKRLPPKGKRLLVLGTTSEVSFLDSVGICDAFSVTYLLPTLKAEDAKKVLKQLNVFAEDDISAAAEALDDMTIKKLY MLIEMAAQGEQGGDAEAIYSGKEKIKIAHFYDCFQDMVRF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G04910		NSF	N-ethylmaleimide sensitive fac...		Potri.011G052800 [exp]	0	1	Pt-NSF.2
AT3G60740		TFCD, EMB133, C...	TITAN 1, TUBULIN FOLDING COFAC...		Potri.014G067400 [exp]	1.00	0.9275	Pt-TTN1.1
AT5G11040		AtTRS120	TRS120 (.1)		Potri.018G022500 [exp]	3.74	0.8785
AT5G54800		ATGPT1, GPT1	ARABIDOPSIS GLUCOSE 6-PHOSPHAT...		Potri.001G420200 [exp]	6.00	0.8697	Pt-GPT.4
AT5G49830		EXO84B	exocyst complex component 84B ...		Potri.010G249900 [exp]	6.40	0.8454
AT3G25800		PP2AA2, PR65, P...	protein phosphatase 2A subuni...		Potri.010G127500 [exp]	8.12	0.8505	PDF1.3
AT3G11130			Clathrin, heavy chain (.1)		Potri.001G278800 [exp]	9.79	0.8731
AT5G42080		RSW9, DRP1A, AG...	RADIAL SWELLING 9, DYNAMIN-REL...		Potri.001G090600 [exp]	9.79	0.8950	ADL1.1
AT1G52630			O-fucosyltransferase family pr...		Potri.003G062600 [exp]	17.02	0.8706
AT4G02030			Vps51/Vps67 family (components...		Potri.002G196300 [exp]	17.02	0.8810
AT1G74910			ADP-glucose pyrophosphorylase ...		Potri.012G075500 [exp]	19.05	0.8157

Compare expression of checked genes

Potri.011G052800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.