Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ERF44
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28360 149 / 5e-46 AP2_ERF AtERF12 ERF domain protein 12 (.1) AT5G44210 110 / 1e-30 AP2_ERF AtERF9, ATERF-9 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) AT3G15210 109 / 4e-30 AP2_ERF ATERF4, RAP2.5, ATERF-4 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) AT1G28370 104 / 8e-29 AP2_ERF AtERF11 ERF domain protein 11 (.1) AT1G50640 105 / 1e-28 AP2_ERF ATERF3 ethylene responsive element binding factor 3 (.1) AT3G20310 101 / 1e-26 AP2_ERF ATERF7, ATERF-7 ethylene response factor 7 (.1) AT1G12980 100 / 1e-25 AP2_ERF DRN, ESR1 ENHANCER OF SHOOT REGENERATION 1, DORNROSCHEN, Integrase-type DNA-binding superfamily protein (.1) AT1G03800 99 / 2e-25 AP2_ERF AtERF10 ARABIDOPSIS THALIANA RF DOMAIN PROTEIN 10, ERF domain protein 10 (.1) AT2G33710 98 / 2e-25 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2) AT1G24590 99 / 5e-25 AP2_ERF ESR2, DRNL, SOB2, DRN-LIKE FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G047500 [exp] 259 / 1e-89 AT1G28360 157 / 3e-49 ERF domain protein 12 (.1) Potri.004G047600 [exp] 112 / 8e-31 AT5G44210 99 / 2e-25 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.017G013700 [exp] 108 / 1e-29 AT5G44210 103 / 2e-27 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.002G043300 [exp] 107 / 2e-29 AT5G44210 88 / 8e-22 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.005G219600 [exp] 106 / 2e-29 AT1G50640 85 / 2e-20 ethylene responsive element binding factor 3 (.1) Potri.007G138100 [exp] 105 / 2e-28 AT5G44210 149 / 3e-45 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.001G067600 [exp] 97 / 4e-25 AT5G13330 130 / 1e-37 related to AP2 6l (.1) Potri.003G162500 [exp] 96 / 9e-25 AT5G13330 142 / 5e-42 related to AP2 6l (.1) Potri.003G150800 [exp] 96 / 2e-24 AT5G51190 185 / 7e-58 Integrase-type DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033664 [exp] 112 / 3e-31 AT3G15210 119 / 2e-33 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Lus10039857 [exp] 107 / 4e-29 AT5G44210 138 / 8e-41 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Lus10031526 [exp] 102 / 5e-27 AT1G50640 112 / 2e-30 ethylene responsive element binding factor 3 (.1) Lus10014345 [exp] 98 / 2e-25 AT1G12980 97 / 1e-24 ENHANCER OF SHOOT REGENERATION 1, DORNROSCHEN, Integrase-type DNA-binding superfamily protein (.1) Lus10035129 [exp] 95 / 4e-24 AT5G13910 152 / 7e-46 LEAFY PETIOLE, Integrase-type DNA-binding superfamily protein (.1) Lus10016827 [exp] 95 / 7e-24 AT3G16770 183 / 4e-57 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Lus10026053 [exp] 93 / 1e-23 AT5G18560 97 / 7e-24 Integrase-type DNA-binding superfamily protein (.1) Lus10018623 [exp] 91 / 1e-23 AT3G15210 104 / 9e-29 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Lus10037448 [exp] 96 / 2e-23 AT1G53910 244 / 4e-78 related to AP2 12 (.1.2.3) Lus10017907 [exp] 94 / 2e-23 AT1G24590 134 / 1e-37 FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF00847 [poplar] [flax] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Potri.011G056900.1 pacid=42782401 polypeptide=Potri.011G056900.1.p locus=Potri.011G056900 ID=Potri.011G056900.1.v4.1 annot-version=v4.1 ATGGCTTCTTCGAGGGAAGGACACTACAGGGGGGTTCGAAAGAGACCATGGGGTCGCTATGCTGCAGAGATACGTGACCCATGGAAGAAAACACGAGTTT GGTTAGGCACATTTGACACACCTGAAGAAGCTGCGCTTGCTTATGATGGTGCAGCTCGTTCTCTTCGTGGAGCTAAAGCAAAGACTAACTTCCCATCACC TCCCTCCACTTCTGGTCTCTCTTTTGACCTCAATCTTCCATCGGATCCTCACCACCACCATCTTCATTGGAGTTCATGTCCTCATTTGGGGTCTCACAGG TTTGGTGGTTTTGGTGAGTTCTTGCAGACTGGAGTAGTTTTTAATGAAATGAACCTCCATGCTACCGAGGCTGCAGCAGCTTCTGGGTCAGTAGCGAAGA ATGAGGGTCCTGGTGCTGTTGCTGGAACTCCGGCGCCGGAAAATGTTGCTCCAGTTTCATTTTTGGGGATGGTGCGACGTGGGCTGCCAATAGATTTGAA CGAGCCCCCGCCTTTGTGGCTGTGA
AA sequence Show only first row Show all	>Potri.011G056900.1 pacid=42782401 polypeptide=Potri.011G056900.1.p locus=Potri.011G056900 ID=Potri.011G056900.1.v4.1 annot-version=v4.1 MASSREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNFPSPPSTSGLSFDLNLPSDPHHHHLHWSSCPHLGSHR FGGFGEFLQTGVVFNEMNLHATEAAAASGSVAKNEGPGAVAGTPAPENVAPVSFLGMVRRGLPIDLNEPPPLWL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G28360	AP2_ERF	AtERF12	ERF domain protein 12 (.1)		Potri.011G056900 [exp]	0	1	ERF44
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Potri.019G003200 [exp]	17.77	0.7657
AT1G76690		OPR2, ATOPR2	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Potri.013G103000 [exp]	18.97	0.7297
					Potri.004G036350 [exp]	21.56	0.7734
AT5G64820			unknown protein		Potri.005G085000 [exp]	32.40	0.7655
AT5G07610			F-box family protein (.1)		Potri.005G043500 [exp]	64.00	0.7449
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Potri.003G183200 [exp]	78.66	0.7367
AT4G23030			MATE efflux family protein (.1...		Potri.015G135600 [exp]	104.91	0.6878
AT5G17800	MYB	ATMYB56	myb domain protein 56 (.1)		Potri.013G067000 [exp]	109.70	0.7079
AT4G31970		CYP82C2, JAH1	"cytochrome P450, family 82, s...		Potri.014G037900 [exp]	134.50	0.7144	Pt-CYP82.16
AT3G23230	AP2_ERF	ERF98	Integrase-type DNA-binding sup...		Potri.002G039200 [exp]	143.90	0.6843

Compare expression of checked genes

Potri.011G056900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.