Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44210 94 / 1e-23 AP2_ERF AtERF9, ATERF-9 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) AT1G28360 87 / 6e-21 AP2_ERF AtERF12 ERF domain protein 12 (.1) AT3G15210 87 / 1e-20 AP2_ERF ATERF4, RAP2.5, ATERF-4 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) AT1G53170 82 / 6e-19 AP2_ERF ATERF8, ATERF-8 ETHYLENE RESPONSE ELEMENT BINDING FACTOR 4, ethylene response factor 8 (.1) AT1G28370 80 / 2e-18 AP2_ERF AtERF11 ERF domain protein 11 (.1) AT1G50640 81 / 3e-18 AP2_ERF ATERF3 ethylene responsive element binding factor 3 (.1) AT1G03800 80 / 1e-17 AP2_ERF AtERF10 ARABIDOPSIS THALIANA RF DOMAIN PROTEIN 10, ERF domain protein 10 (.1) AT3G20310 79 / 3e-17 AP2_ERF ATERF7, ATERF-7 ethylene response factor 7 (.1) AT1G12980 79 / 6e-17 AP2_ERF DRN, ESR1 ENHANCER OF SHOOT REGENERATION 1, DORNROSCHEN, Integrase-type DNA-binding superfamily protein (.1) AT1G24590 77 / 1e-16 AP2_ERF ESR2, DRNL, SOB2, DRN-LIKE FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G047600 [exp] 249 / 2e-83 AT5G44210 99 / 2e-25 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.017G013700 [exp] 91 / 4e-22 AT5G44210 103 / 2e-27 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.007G138100 [exp] 90 / 1e-21 AT5G44210 149 / 3e-45 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.011G056900 [exp] 84 / 9e-20 AT1G28360 149 / 6e-46 ERF domain protein 12 (.1) Potri.004G047500 [exp] 84 / 1e-19 AT1G28360 157 / 3e-49 ERF domain protein 12 (.1) Potri.001G397200 [exp] 84 / 2e-19 AT3G15210 95 / 1e-23 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Potri.011G115600 [exp] 82 / 9e-19 AT3G15210 92 / 7e-23 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Potri.005G219600 [exp] 77 / 3e-17 AT1G50640 85 / 2e-20 ethylene responsive element binding factor 3 (.1) Potri.001G356100 [exp] 77 / 4e-17 AT1G50640 108 / 7e-29 ethylene responsive element binding factor 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015415 [exp] 125 / 6e-35 AT5G44210 134 / 8e-39 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Lus10039857 [exp] 91 / 5e-22 AT5G44210 138 / 8e-41 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Lus10033664 [exp] 81 / 2e-18 AT3G15210 119 / 2e-33 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Lus10035329 [exp] 80 / 3e-17 AT3G15210 115 / 8e-31 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Lus10029987 [exp] 75 / 6e-17 AT3G15210 115 / 7e-33 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Lus10031526 [exp] 77 / 1e-16 AT1G50640 112 / 2e-30 ethylene responsive element binding factor 3 (.1) Lus10035076 [exp] 78 / 2e-16 AT1G24590 143 / 2e-40 FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1) Lus10017907 [exp] 77 / 2e-16 AT1G24590 134 / 1e-37 FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1) Lus10018623 [exp] 74 / 3e-16 AT3G15210 104 / 9e-29 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Lus10043182 [exp] 75 / 5e-16 AT3G20310 111 / 6e-30 ethylene response factor 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF00847 [poplar] [flax] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Potri.011G057000.1 pacid=42780557 polypeptide=Potri.011G057000.1.p locus=Potri.011G057000 ID=Potri.011G057000.1.v4.1 annot-version=v4.1 ATGGCACCGAGAGAGAAAACCGCGCCCGGTAAAGTTAACGGCGGCACGTGTGGTGGTGCTGGTGGAGGAGGCAAGGAGGTGCATTTTAGAGGTGTGAGAA AGAGGCCATGGGGAAGATACGCCGCCGAGATAAGAGACCCTGGCAAGAAGAGCCGGGTTTGGCTTGGCACTTTCGACACCGCAGAGGAAGCCGCACGTGC CTACGATGCTGCCGCACGTGAGTTCCGTGGTTCTAAGGCGAAAACCAACTTTGCTTACCCATCATACGAGAATGTCAGGAAAAACACTATCTCTGTGGAC AGCAACCATAAAGCATCTAACAAGAATAACAGTTGCGGCGGCGGCGGCGGCGGCGGCAATAGTAATAACAATCAGAGTCCAAGTCAAAGCAGTACCGTGG AGTTTTCCAGCAGTGATACACCGTTGGATCTTAATCTCGGTCCTGCTGTATCCACCGTGAGATTGCCGTTTCAGCCGATGGTGATGAATCATCAGCAGGT GATTTATTTTGATGCAGTGATGAAGAGTCAGTGCCAAAAGACGGTTTTTGATAATGGGTATCATCATCATCATCATCCTAACCAGCCGATGGGTTTTTCT TGTGGTGGAATCCAAAGTGATTCTGATTCATCATCTATCGTCTTTGATTTGAATCATCAAGATATCAAGACGCCAAGAAGTTCTGTTGATCTTGATCTTA ATCTTAACCTTCCTCCCCCACCGGAGATTGCATGA
AA sequence Show only first row Show all	>Potri.011G057000.1 pacid=42780557 polypeptide=Potri.011G057000.1.p locus=Potri.011G057000 ID=Potri.011G057000.1.v4.1 annot-version=v4.1 MAPREKTAPGKVNGGTCGGAGGGGKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAAREFRGSKAKTNFAYPSYENVRKNTISVD SNHKASNKNNSCGGGGGGGNSNNNQSPSQSSTVEFSSSDTPLDLNLGPAVSTVRLPFQPMVMNHQQVIYFDAVMKSQCQKTVFDNGYHHHHHPNQPMGFS CGGIQSDSDSSSIVFDLNHQDIKTPRSSVDLDLNLNLPPPPEIA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G44210	AP2_ERF	AtERF9, ATERF-9	ERF DOMAIN PROTEIN- 9, erf dom...		Potri.011G057000 [exp]	0	1
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Potri.001G044500 [exp]	2.00	0.9222	Pt-WRKY40.1
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Potri.008G090400 [exp]	2.82	0.8964
AT5G44210	AP2_ERF	AtERF9, ATERF-9	ERF DOMAIN PROTEIN- 9, erf dom...		Potri.004G047600 [exp]	3.00	0.9100
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125651 [exp]	4.00	0.8636
AT2G15760			Protein of unknown function (D...		Potri.009G105400 [exp]	6.92	0.8086
AT3G14470			NB-ARC domain-containing disea...		Potri.001G261500 [exp]	7.07	0.8725
AT5G37490			ARM repeat superfamily protein...		Potri.017G135000 [exp]	7.34	0.8746
AT3G50900			unknown protein		Potri.007G022300 [exp]	8.83	0.8893
AT2G32070			Polynucleotidyl transferase, r...		Potri.006G262500 [exp]	10.95	0.8255
AT5G47710			Calcium-dependent lipid-bindin...		Potri.016G005300 [exp]	13.22	0.8942

Compare expression of checked genes

Potri.011G057000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.