Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30450 1456 / 0 HAP5, ATCCC1, CCC1 HAPLESS 5, cation-chloride co-transporter 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G357600 [exp] 1691 / 0 AT1G30450 1458 / 0.0 HAPLESS 5, cation-chloride co-transporter 1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036156 [exp] 1445 / 0 AT1G30450 1536 / 0.0 HAPLESS 5, cation-chloride co-transporter 1 (.1.2.3) Lus10003407 [exp] 1426 / 0 AT1G30450 1520 / 0.0 HAPLESS 5, cation-chloride co-transporter 1 (.1.2.3) Lus10000067 [exp] 370 / 2e-121 AT1G30450 403 / 6e-135 HAPLESS 5, cation-chloride co-transporter 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03522 [poplar] [flax] SLC12 Solute carrier family 12 CL0062 [poplar] [flax] APC PF13520 [poplar] [flax] AA_permease_2 Amino acid permease
Representative CDS sequence Show only first row Show all	>Potri.011G090900.1 pacid=42781547 polypeptide=Potri.011G090900.1.p locus=Potri.011G090900 ID=Potri.011G090900.1.v4.1 annot-version=v4.1 ATGGACAACGGAGATATTGAAGGTGGTGGGTCAGAAGACGAATTCCACACGAAGCAGAGTGGTCGCAAATACAGGCCTGTGGTGGCTCACGATCCCGCCG TCCTTGAGATGTCCTCCGTTCCTCCCGGATCTTCTTCCCAAGAAAAAACAAACACGAATTCCGATCGTTTGAATGATAATACAAATGGTTCAGAAAGAGA GCACAGATTGGAATTGTTTGGTTTTGATTCCCTCGTCAACATTCTTGGTCTTAAGAGTATGACAGGGGAGCAAGTTGCCGCACCTTCTAGTCCCAGGGGG GATGGTGAGGATGCTCCTGTCACCTTTGATCGAGATCGCCCAGGGCATAATGATCTTAAACTGGGAACGTTGATGGGTGTTTTCGTCCCATGCTTGCAAA ACATACTTGGAATTATCTACTATATTCGGTTTTCTTGGATTGTTGGCATGGCTGGCATAGGCGAATCTCTGGTGCTGGTAGCATTTTGTGGTTTGTGTAC TTTCCTAACCGGGATTTCACTGAGCGCTATTGCAACTAATGGTGCAATGAAGGGTGGGGGCCCATATTATCTCATTGGTCGTGCCCTTGGTCCTGAGATT GGAGTGAGTATTGGATTATGTTTCTTCCTTGGGAATGCAGTTGCTGGAGCTCTCTATGTGTTGGGAGCTGTAGAAACCTTTTTAAATGCCTTTCCTGCTG CTGGGCTATTCGGAGAGGCTATAACAACATTTAATGGAACAGAAGTTGCACATCCCATACAAAGTCCAAGTTCACATGATCTGCAAATTTATGGGATTGT TGTGACAATTCTCATATGCTTTATCGTGTTTGGTGGTGTGAAGATGATCAATCGAGTTGCACCTGCTTTTCTCATTCCTGTTTTGTTCTCGTTGTTCTGC ATATTTATTGGGATATTTTTGGCGAAGAAGGACTACCCTGCCGATGGAATCACGGGCTTGAGTTTGGAAAGTTTTAAAGAAAACTGGAGTTCAGATTATC AATTTACTAATAATGCTGGCATACCTGATCCTGAAGGAAAGGTCTACTGGAATTTCAATGCGTTGGTTGGCCTATTTTTCCCTGCTGTAACGGGAATTAT GGCGGGCTCTAATAGATCAGCCTCACTTAAAGACACACAACGTTCAATTCCCATCGGTACATTGGCTGCAACTCTTGCAACCACTGCACTATATCTAGTG TCTGTGTTATTATTTGGAGCACTTGCAACTAGAGATGCTCTCTTGACAGACAGGCTACTTACAGCTACTGTTGCCTGGCCTTTCCCTGCCATCATCTACG TTGGTATCATTCTTTCAACCTTGGGTGCCGCTCTTCAAAGCATGACAGGTGCCCCACGCCTGCTTGCAGCCATAGCCAATGATGAAATTCTCCCTGTTCT TAACTATTTCAAAGTTGCAGATGGACATGAGCCACACATTGCTACTCTCTTTACTGCATTTATCTGTGTTGGGTGTGTCGTTATTGGGAATTTAGATCTT ATCACACCAACTGTAACTATGTTTTACCTTTTATGTTATGCTGGCGTGAACTTGTCTTGCTTCCTTCTAGATCTTCTAGATGCTCCCAGTTGGCGACCAC GGTGGAAAATTCACCATTGGAGCCTCTCTCTTCTTGGAGCATCACTATGCATAGTTATCATGTTCTTGATTTCTTGGTCGTTCACTGTTGTGTCTCTGGC ACTAGCAAGCCTCATTTATTATTATGTCAGCATTAAAGGAAAGGCTGGGGACTGGGGTGATGGCTTCAAGAGTGCATATTTTCAACTAGCTCTTCGCAGT CTTCGATCGCTGGGAGCTAACCAAGTGCACCCAAAAAATTGGTACCCAATCCCTCTTGTATTCTGCCGGCCATGGGGAAAGCTGCCAGAAAATGTTCCCT GCCATCCCAAGCTTGCCGACTTTGCCAACTGCATGAAGAAGAAAGGCCGTGGGATGTCCATATTTGTCTCTATACTAGATGGAGACTATCATGAACATGC TGAAGATGCTAAGGCAGCCTGTAAGCAACTAAGCACCTACATTGATTACAAGTGCTGTGAGGGCGTTGCAGAAATAGTTGTAGCCCCCAATATGTCTGAA GGTTTTCGTGGAATTGTCCAGACTATGGGCCTTGGTAACCTGAAGCCCAACATTGTGGTGATGCGGTATCCTGAAATCTGGCGGCGTGAAAATTTAAAAG AAATACCTGCCACTTTTGTTGGAATAATCAATGACTGCATCGTTGCAAACAAAGCTGTTGTTATTGTCAAGGGTCTTGATGAGTGGCCCAATGAGTATCA AATGCAGTACGGAACTATTGATTTGTATTGGATTGTAAGAGATGGTGGTCTAATGCTTCTTCTTTCCCAGCTCCTTCGTACTAAGAAGAGTTTTGAGAAT TGTAAGATTCAGGTCTTCTGCATTGCAGAGGAGGATTCAGATGCAGAGGAACTCAAAGCTGATGTGAAGAAGTTTCTCTATGATCTTCGGATGCAGGCTG AAGTGATTGTAATATCTATGAAATCTTGGGATGTGCAAATAGAGGGTGGATCTCAACAAGATGAATGGTCAGAATCATTTACACCTGCTCAGCAGCGCAT TGCTGGCTACTTAGCTGAGATGAAGAGGGCGGCTCAGGGGGATGAGAATAAGCTGATGGCTGATGGGAAACCTGTAGTAGTGAACGAGCAACAGGTAGAG AAGTTTCTTTACACCACCCTGAAGCTAAATTCAACGATATTGAGATACTCTAGAATGGCTGCTGTTGTGCTGGTGAGTCTGCCCCCGCCTCCAGTACACC ACCCTGCTTACTTTTACATGGAGTACATGGATCTATTAGTAGAGAATGTGCCAAGGCTTTTAATCGTAAGAGGATACCGTAGAGATGTTGTAACTCTATT CACATAG
AA sequence Show only first row Show all	>Potri.011G090900.1 pacid=42781547 polypeptide=Potri.011G090900.1.p locus=Potri.011G090900 ID=Potri.011G090900.1.v4.1 annot-version=v4.1 MDNGDIEGGGSEDEFHTKQSGRKYRPVVAHDPAVLEMSSVPPGSSSQEKTNTNSDRLNDNTNGSEREHRLELFGFDSLVNILGLKSMTGEQVAAPSSPRG DGEDAPVTFDRDRPGHNDLKLGTLMGVFVPCLQNILGIIYYIRFSWIVGMAGIGESLVLVAFCGLCTFLTGISLSAIATNGAMKGGGPYYLIGRALGPEI GVSIGLCFFLGNAVAGALYVLGAVETFLNAFPAAGLFGEAITTFNGTEVAHPIQSPSSHDLQIYGIVVTILICFIVFGGVKMINRVAPAFLIPVLFSLFC IFIGIFLAKKDYPADGITGLSLESFKENWSSDYQFTNNAGIPDPEGKVYWNFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLATTALYLV SVLLFGALATRDALLTDRLLTATVAWPFPAIIYVGIILSTLGAALQSMTGAPRLLAAIANDEILPVLNYFKVADGHEPHIATLFTAFICVGCVVIGNLDL ITPTVTMFYLLCYAGVNLSCFLLDLLDAPSWRPRWKIHHWSLSLLGASLCIVIMFLISWSFTVVSLALASLIYYYVSIKGKAGDWGDGFKSAYFQLALRS LRSLGANQVHPKNWYPIPLVFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHEHAEDAKAACKQLSTYIDYKCCEGVAEIVVAPNMSE GFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLKEIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQMQYGTIDLYWIVRDGGLMLLLSQLLRTKKSFEN CKIQVFCIAEEDSDAEELKADVKKFLYDLRMQAEVIVISMKSWDVQIEGGSQQDEWSESFTPAQQRIAGYLAEMKRAAQGDENKLMADGKPVVVNEQQVE KFLYTTLKLNSTILRYSRMAAVVLVSLPPPPVHHPAYFYMEYMDLLVENVPRLLIVRGYRRDVVTLFT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G30450		HAP5, ATCCC1, C...	HAPLESS 5, cation-chloride co-...		Potri.011G090900 [exp]	0	1
AT1G10290		DRP2A, ADL6	DYNAMIN-RELATED PROTEIN 2A, dy...		Potri.003G001400 [exp]	1.00	0.9515	Pt-DH1.2
AT1G61850			phospholipases;galactolipases ...		Potri.004G018700 [exp]	2.00	0.9407
AT1G30450		HAP5, ATCCC1, C...	HAPLESS 5, cation-chloride co-...		Potri.001G357600 [exp]	4.24	0.9312
AT2G44610		RAB6, AtRABH1b,...	Ras-related small GTP-binding ...		Potri.001G147900 [exp]	4.24	0.9468
AT1G14020			O-fucosyltransferase family pr...		Potri.008G090600 [exp]	5.19	0.9453
AT5G45290			RING/U-box superfamily protein...		Potri.003G106600 [exp]	7.74	0.9355
AT5G46910			Transcription factor jumonji (...		Potri.001G137700 [exp]	8.24	0.9154
AT2G25737			Sulfite exporter TauE/SafE fam...		Potri.018G037500 [exp]	10.39	0.9353
AT3G27470			Protein of unknown function (D...		Potri.017G065200 [exp]	13.26	0.9333
AT5G64180			unknown protein		Potri.015G005600 [exp]	13.85	0.9285

Compare expression of checked genes

Potri.011G090900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.