Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PORA.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54190 592 / 0 PORA protochlorophyllide oxidoreductase A (.1.2) AT4G27440 569 / 0 PORB protochlorophyllide oxidoreductase B (.1.2) AT1G03630 561 / 0 PORC ,POR C protochlorophyllide oxidoreductase C (.1.2) AT4G23430 98 / 1e-22 AtTic32-IVa translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G23420 90 / 6e-20 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G27760 86 / 3e-18 FEY3, FEY FOREVER YOUNG, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G37540 83 / 2e-17 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G11410 81 / 9e-17 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G50130 77 / 7e-16 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G53100 78 / 9e-16 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G403300 [exp] 650 / 0 AT5G54190 555 / 0.0 protochlorophyllide oxidoreductase A (.1.2) Potri.013G135500 [exp] 570 / 0 AT1G03630 604 / 0.0 protochlorophyllide oxidoreductase C (.1.2) Potri.012G143600 [exp] 103 / 1e-24 AT4G23430 401 / 2e-140 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.001G103000 [exp] 103 / 1e-24 AT4G11410 446 / 4e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.015G146600 [exp] 101 / 4e-24 AT4G23420 444 / 6e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.003G128800 [exp] 96 / 7e-22 AT4G23420 442 / 5e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.003G128700 [exp] 87 / 9e-19 AT4G11410 497 / 4e-179 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G083900 [exp] 86 / 2e-18 AT5G02540 452 / 3e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.012G143800 [exp] 83 / 1e-17 AT4G23420 427 / 3e-151 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043090 [exp] 588 / 0 AT5G54190 652 / 0.0 protochlorophyllide oxidoreductase A (.1.2) Lus10018579 [exp] 521 / 0 AT5G54190 600 / 0.0 protochlorophyllide oxidoreductase A (.1.2) Lus10039810 [exp] 513 / 0 AT5G54190 603 / 0.0 protochlorophyllide oxidoreductase A (.1.2) Lus10032665 [exp] 484 / 7e-173 AT5G54190 545 / 0.0 protochlorophyllide oxidoreductase A (.1.2) Lus10024647 [exp] 100 / 1e-23 AT4G11410 461 / 1e-164 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10038857 [exp] 97 / 3e-22 AT4G23430 436 / 2e-154 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10035480 [exp] 96 / 6e-22 AT4G11410 444 / 5e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014975 [exp] 95 / 2e-21 AT4G23430 442 / 8e-157 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10035479 [exp] 95 / 2e-21 AT4G11410 444 / 2e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10032280 [exp] 94 / 6e-21 AT4G11410 461 / 5e-163 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00106 [poplar] [flax] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Potri.011G122400.1 pacid=42781644 polypeptide=Potri.011G122400.1.p locus=Potri.011G122400 ID=Potri.011G122400.1.v4.1 annot-version=v4.1 ATGGCTCTTCAGGCTGCTTCTTTGGTTTCCTCTGCTTTTGTTTTCCCCAAAGAGGGAAAATCTAATGCATATTTCAAGGATTCAAGTTTGTTCGGAGTTT CACTTTCAGAACATGTCAAAGCTGACTTTAGCTCTTGTGCATTGAAGTGCAAGAGGGAATTCAACCAAGGAGTTGGGGCTGTAAGAGCCCAAACAATGGT CGCTGCTACTCCAGCACTCGACAGAGCTTCTTCAGAAAGCAAGAAAACCCTTGGGCAGGGAACTTGCATTGTCACTGGTGCTTCCTCTGGATTAGGTCTG GCAACAGCTAAGGCTCTAGCTGAGACTGGAAAATGGCACATAATTATGGCCTGCAGGAACTTCCTGAAGGCAGAAAGGGCTGCAAAATCAGCTGGCATTG CAAAAGAAAACTACACCATTATGCATTTGGACCTTGCTTCACTTGACAGTGTCCGCCAATTTGTGGATACCTTTAGGCGATCAGGGAGGCCACTTGATGT GCTAGTTTGCAATGCAGCTGTTTACTTGCCAACTGCGAAAGAGCCTGCATTCACTGCTGAAGGATTCGAACTTAGTGTTGGAACTAACCATCTGGGTCAT TTCCTCCTTTCAAGATTGTTGCTTGAGGACATGAAGAAATCTGATTACCCATCAAAACGTCTCATAATTGTTGGCTCAATTACAGGGAACACAAATACAT TGGCTGGCAATGTACCTCCTAAGGCCAATCTCGGTGACTTGAGGGGACTTTCAGGGGGCTTGAATGGACTAAACAGATCAGCCATGATTGATGGTGGCGT GTTTGATGGTGCCAAAGCCTACAAGGACAGCAAGGTCTGCAACATGCTCACCATGCAAGAGTTCCACAGGCGTTTGCATGAGGAAACCGGCATTGCATTT GCTTCCCTTTACCCTGGTTGCATTGCCACAACAGGCTTGTTCAGGGAGCACATTCCCTTGTTCAGGCTTCTATTCCCTCCATTCCAAAAGTACATTACTA AGGGCTTCGTCTCCGAGCACGAAGCTGGAAAAAGACTTGCTCAGGTTGTGAGTGATCCAAGTTTGACGAAATCAGGGGCATACTGGAGCTGGAACAAACA CTCAGCTTCATTTCAGAACCAGTTGTCTCAGGAAGCTAGTGATGCAGAGAAGGCTCGTAAAGTATGGGAGATTAGCGAGAAACTTGTTGGCTTGGCCTAA
AA sequence Show only first row Show all	>Potri.011G122400.1 pacid=42781644 polypeptide=Potri.011G122400.1.p locus=Potri.011G122400 ID=Potri.011G122400.1.v4.1 annot-version=v4.1 MALQAASLVSSAFVFPKEGKSNAYFKDSSLFGVSLSEHVKADFSSCALKCKREFNQGVGAVRAQTMVAATPALDRASSESKKTLGQGTCIVTGASSGLGL ATAKALAETGKWHIIMACRNFLKAERAAKSAGIAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPAFTAEGFELSVGTNHLGH FLLSRLLLEDMKKSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGLSGGLNGLNRSAMIDGGVFDGAKAYKDSKVCNMLTMQEFHRRLHEETGIAF ASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGFVSEHEAGKRLAQVVSDPSLTKSGAYWSWNKHSASFQNQLSQEASDAEKARKVWEISEKLVGLA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54190		PORA	protochlorophyllide oxidoreduc...		Potri.011G122400 [exp]	0	1	Pt-PORA.1
AT2G41180		SIB2	sigma factor binding protein 2...		Potri.006G038900 [exp]	1.41	0.8940
AT4G24275			unknown protein		Potri.003G006100 [exp]	2.82	0.8650
AT1G79040		PSBR	photosystem II subunit R (.1)		Potri.001G438800 [exp]	5.29	0.8540	Pt-PP1.2
AT4G38620	MYB	AtMYB4	myb domain protein 4 (.1)		Potri.005G112000 [exp]	8.66	0.8629
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Potri.001G015601 [exp]	10.19	0.8785
AT1G70670		AtCLO4	Arabidopsis thaliana caleosin ...		Potri.008G133800 [exp]	11.31	0.8331	Pt-CABP1.1
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Potri.001G015500 [exp]	12.96	0.8704
AT2G24280			alpha/beta-Hydrolases superfam...		Potri.006G207900 [exp]	15.49	0.8551
AT3G48940			Remorin family protein (.1)		Potri.012G140900 [exp]	25.45	0.8528
AT1G79040		PSBR	photosystem II subunit R (.1)		Potri.011G142300 [exp]	26.83	0.8155	Pt-PP1.1

Compare expression of checked genes

Potri.011G122400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.