Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27220 290 / 3e-83 NB-ARC domain-containing disease resistance protein (.1) AT4G27190 279 / 5e-79 NB-ARC domain-containing disease resistance protein (.1) AT4G10780 247 / 1e-68 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G12210 244 / 2e-67 RFL1 RPS5-like 1 (.1) AT4G26090 243 / 6e-67 RPS2 RESISTANT TO P. SYRINGAE 2, NB-ARC domain-containing disease resistance protein (.1) AT1G12280 243 / 6e-67 LRR and NB-ARC domains-containing disease resistance protein (.1) AT5G47250 241 / 8e-67 LRR and NB-ARC domains-containing disease resistance protein (.1) AT5G43730 241 / 8e-67 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G63020 238 / 1e-65 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G61180 235 / 2e-64 LRR and NB-ARC domains-containing disease resistance protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G404800 [exp] 855 / 0 AT4G27220 323 / 5e-95 NB-ARC domain-containing disease resistance protein (.1) Potri.001G405100 [exp] 834 / 0 AT4G27220 311 / 1e-90 NB-ARC domain-containing disease resistance protein (.1) Potri.011G124100 [exp] 813 / 0 AT4G27220 279 / 6e-80 NB-ARC domain-containing disease resistance protein (.1) Potri.011G124000 [exp] 788 / 0 AT4G27220 312 / 8e-92 NB-ARC domain-containing disease resistance protein (.1) Potri.018G136700 [exp] 732 / 0 AT4G27190 323 / 4e-94 NB-ARC domain-containing disease resistance protein (.1) Potri.T045000 [exp] 717 / 0 AT4G27220 322 / 1e-94 NB-ARC domain-containing disease resistance protein (.1) Potri.018G145566 [exp] 712 / 0 AT4G27220 348 / 7e-105 NB-ARC domain-containing disease resistance protein (.1) Potri.018G135600 [exp] 706 / 0 AT4G27220 338 / 7e-100 NB-ARC domain-containing disease resistance protein (.1) Potri.T045200 [exp] 694 / 0 AT4G27220 348 / 1e-104 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039509 [exp] 135 / 8e-32 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039540 [exp] 128 / 1e-29 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10020016 [exp] 127 / 2e-29 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10005321 [exp] 125 / 1e-28 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10002945 [exp] 123 / 3e-28 AT3G07040 580 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10018937 [exp] 121 / 1e-27 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 121 / 2e-27 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10028639 [exp] 114 / 1e-25 AT3G07040 579 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10026109 [exp] 114 / 2e-25 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10014922 [exp] 112 / 5e-25 AT3G07040 523 / 1e-171 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.011G127200.8 pacid=42780516 polypeptide=Potri.011G127200.8.p locus=Potri.011G127200 ID=Potri.011G127200.8.v4.1 annot-version=v4.1 ATGGTTAGACCGAACGATCCCTTTTGGGATTATGTGGAGAAGATGACCGGTGGTCTTTTGAGGTGCATGTTTTGCGAGTATATATTTGCTGTTGCTACTT CAATATCGAGGATCAAATCACATTTCGCAGGAGTCAAACGGCGCGGAGTTAATATCTGTACAAAAGTGCCTAAAGAGATTCAAGAAGCATCCTATTTAGC TATTCATGGCTCAAGAAAGAAACTTAAAACCATGCCAAGTGAGGTAGCTAATAAGTTTTCTACTTCTTCACTAGAAGAAAAGAATGAAGTTGAAATTCTT GCAAGGGATATAGAAGAGGTGCTGATGGAAGCTGAAAGCTCGGATGAAGTAGAGAGCAAGAGTCCTGCAGAATTGATCCAGTTTGTTGAAACTGGTAGCT CTGTTGAAGGGAATGTTGCTGATGTGCACGAGACTGGAGGAACTGCATTGCCAAGAATGGATCTAGTTGGTCAATCAATTGAAAAAGACTGGCAAGAGAT ATTTGATTTGTCAAAGGAGAACGATGATTTGAATTGTAGCAGAGAGGACATGGCTGGAGATCTGATTCAGGAAGGGTTACATGAGACTAGAGGAGATGCA TTGCTGACAACGGAGCTAGTGGGTCAAGCGTTTCAAAGAAATACGGATGAGATTTGGTCTTTGTTAAAGAAGGAGCAGGTTTTAACTATTGGTGTTTGTG GAAGGGGAGGGATGGGCAAAACAACACTGGTGATGCATATCCATAATCTGCTTCTGAAAATACCAAACTCTTTTCATCATATTTATTGGATTACTGTAAC ACAAGATTTTAGCATTTATAAGTTGCAGAATCTGATTGCCAAAAACATTGATTTAGATCTTTCAAATGAAAAAGATGAGAAGAGTAGAGCTGCAAAACTT TCAAAAGCATTTTTAACAAAACAAAAATCTGTGCTGATATTAGATAATTTGAGGAATCATTTTGATGTGGAGAAGGTGGGAATTCCTATCAGAGGGAATA AATGCAAGTTGATTTTTACAACTCGATCACTAGATGTTTGTAAATGGATGGGCTGCCCAGAGTACATGGTCAATGTGGAGCCTCTTTCTGAGGAAGAGGC TTGGAGCTTGTTTGCTAAGGAACTTGGGAATTTTGATATCAAAGTGGGACATTTGGCAAAATTTCTTGCGAGTGAATGTGCTGGTTTTCCACTCGGGATT AAAACAACGGCGAGAAGCATGAGGGGGGTGGAAGATGTTTACGCGTGGAGGAAAACATTACAGGAATTGGAAGGATTGAAACGTACAAAAGGAAGCATGG AACTCGATGTGTTTCCGATATTGGAATTTAGTTATTTACATTTGAATGATTTATCATTGCAACGATGTCTGTTATATTGTGCGTTGTTTCCAGAGGATTG CAAGATCAACAAAAATGACTTGATAGAGTATTTGATTGCTGAGGGAATAATAGAAGCTAGAGGGAGCAGGCAATCCCAATTTGATAACGGCCACTTCATG CTTGATAAACTTGAAAATGCCTGCTTATTGGAGAGCTTTATAACTGAAGATTATGGATATGTCAGGATGCATGACTTGATTAGGGATATGGCCCTCCAAA TTATGAATTCAAGAGCAATGGTTAAAGCTGGTGTTCAATTAAAAGAATTCCCAGATGAGGAGAAATGGACCGAGGGTCTTATGCATGTTTCATTAATGAG AAATGACATCGAGGAAGTTCCACCAAACCTTTCGCCAAGGTGTACCAATCTGGCAACCTTGTTGTTATGTGGAAATCACAAACTGGAATTGATCACAGAT TCTTTTGTCAAACGATTCTGCCTGCTCCAGTTTCTTGACCTCTCTTTTACTGCTATAAAGGAATTGCCAGGTTCCATCTCTGGTCTTGTGCATCTAGATG GATTATGGCTGAGGGGCTGTAACAAGCTGAGACATGTACCATCATTAGCAAAGCTCAGGAAACTGAAGATGCTGAATTTCAGTAATGCTCCACTTGAAGA GGTGCCTCACGGTATAGATTCGCTTTTCAAATTGAGGTATCTTAATCTCGACGGGACTACACTCAAGGAATTTTCTGCCACTATGTTTTTTAATCTCTCT AATTTACAATTCCTCCACCTGCACCAGTCTTTAGGAGGTCTCAGAGCAGTTGAAGTAGAGGGAGTAGCAGGCTTGAGAAAGTTGGAATCTTTGAAATGCC ATTTCTATGATCTTGTTGGTTTCAACAAGTATCTTAAATCTCAAGAAGAGAGGCAACCGTTATGCACTTACGATATCAAAATAGGACAGCTAGGTGACAA TGTCTTTACAGATTTTATGCTTCCTCCAATCTCAAAGAAAGACACAAATAAAGAAGTTCGGTTATACAACTGCAATATTGGCGATAGAGGAGATTTTCTA GCACTTCCTGAAGGCATACAGAAACTGGTGATTGCTAAATGCCATGATGCCAGAAACTTATGCAACGTACAAGCAACTGGACTGAAGTCTTTTGTAATTT CTGAGTGCCATGGTGTGGAGTTCCTGTTCACGTTGTCCAGCTTTTCCACTGATATAGTTAAAAGCGTCGAAACTCTTCATCTTTACTGGTTGAAGAACTT ACTTGCCCTCTTCGGCAGAGAAGGAACTGCTTTACAACCATTCCCATCTATTGGTACCTTTTCTTGTCTCAGAGTATTTGATGTGTTTAATTGTCCAAGT ATAAAAAAGCTGTTTCCTTCTGGCTTGCTACCGAACCTCAAACACCTCGAAGTAATTGAAGTAGAATTTTGTGACAAAATGGAGGAGATAATAGCGGCAG AAGAAGAAGACGAAGGCGGGATTATGGGTGAAGAAAGAAACAGCAGCAGCCGTTCCATTGATGCCAGTGTGGAATTCAGGCTGCCAAATTTGCGGCTACT AAAATTGAGAAATTTATCGGAGCTAAAAAGCATTTGCAGTGGGGTAATGATTTGTGATTCTCTCCAAGAACTTGATGTTGTTTACTGTTTGAAGCTGAAG AGGTTACCATTCTCTCGTGCCCTGCTAAAATCAATTCGAAAAATCCCGTCGTATCCAGAAGAATGGTGGGAGCAAGTGGAATGGGACAAGTGCAGTGCAA AGAACATCCATCAACCCCCTCCCTGA
AA sequence Show only first row Show all	>Potri.011G127200.8 pacid=42780516 polypeptide=Potri.011G127200.8.p locus=Potri.011G127200 ID=Potri.011G127200.8.v4.1 annot-version=v4.1 MVRPNDPFWDYVEKMTGGLLRCMFCEYIFAVATSISRIKSHFAGVKRRGVNICTKVPKEIQEASYLAIHGSRKKLKTMPSEVANKFSTSSLEEKNEVEIL ARDIEEVLMEAESSDEVESKSPAELIQFVETGSSVEGNVADVHETGGTALPRMDLVGQSIEKDWQEIFDLSKENDDLNCSREDMAGDLIQEGLHETRGDA LLTTELVGQAFQRNTDEIWSLLKKEQVLTIGVCGRGGMGKTTLVMHIHNLLLKIPNSFHHIYWITVTQDFSIYKLQNLIAKNIDLDLSNEKDEKSRAAKL SKAFLTKQKSVLILDNLRNHFDVEKVGIPIRGNKCKLIFTTRSLDVCKWMGCPEYMVNVEPLSEEEAWSLFAKELGNFDIKVGHLAKFLASECAGFPLGI KTTARSMRGVEDVYAWRKTLQELEGLKRTKGSMELDVFPILEFSYLHLNDLSLQRCLLYCALFPEDCKINKNDLIEYLIAEGIIEARGSRQSQFDNGHFM LDKLENACLLESFITEDYGYVRMHDLIRDMALQIMNSRAMVKAGVQLKEFPDEEKWTEGLMHVSLMRNDIEEVPPNLSPRCTNLATLLLCGNHKLELITD SFVKRFCLLQFLDLSFTAIKELPGSISGLVHLDGLWLRGCNKLRHVPSLAKLRKLKMLNFSNAPLEEVPHGIDSLFKLRYLNLDGTTLKEFSATMFFNLS NLQFLHLHQSLGGLRAVEVEGVAGLRKLESLKCHFYDLVGFNKYLKSQEERQPLCTYDIKIGQLGDNVFTDFMLPPISKKDTNKEVRLYNCNIGDRGDFL ALPEGIQKLVIAKCHDARNLCNVQATGLKSFVISECHGVEFLFTLSSFSTDIVKSVETLHLYWLKNLLALFGREGTALQPFPSIGTFSCLRVFDVFNCPS IKKLFPSGLLPNLKHLEVIEVEFCDKMEEIIAAEEEDEGGIMGEERNSSSRSIDASVEFRLPNLRLLKLRNLSELKSICSGVMICDSLQELDVVYCLKLK RLPFSRALLKSIRKIPSYPEEWWEQVEWDKCSAKNIHQPPP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27220			NB-ARC domain-containing disea...		Potri.011G127200 [exp]	0	1
AT1G57790			F-box family protein (.1)		Potri.012G106800 [exp]	2.64	0.9371
AT5G12260			unknown protein		Potri.012G121826 [exp]	5.29	0.9192
					Potri.019G012483 [exp]	7.00	0.8950
AT3G29180			Protein of unknown function (D...		Potri.017G088000 [exp]	7.74	0.9072
AT5G13890			Family of unknown function (DU...		Potri.010G067000 [exp]	11.83	0.8852
AT2G33060		AtRLP27	receptor like protein 27 (.1)		Potri.010G009400 [exp]	12.24	0.8848
AT1G61250		SC3	secretory carrier 3 (.1.2)		Potri.004G036600 [exp]	12.48	0.8875
AT2G22560			Kinase interacting (KIP1-like)...		Potri.005G147300 [exp]	13.03	0.8735
AT3G05320			O-fucosyltransferase family pr...		Potri.012G118800 [exp]	17.49	0.8824
AT4G01500	B3	NGA4	NGATHA4, AP2/B3-like transcrip...		Potri.011G005200 [exp]	17.66	0.8793

Compare expression of checked genes

Potri.011G127200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.