Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50950 493 / 1e-162 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT5G35450 205 / 2e-55 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G50180 196 / 2e-52 NB-ARC domain-containing disease resistance protein (.1) AT5G43470 194 / 1e-51 HRT, RCY1, RPP8 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT5G48620 191 / 1e-50 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G07040 191 / 3e-50 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT1G58410 186 / 1e-48 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58390 183 / 8e-48 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G46530 182 / 8e-48 RPP13 RECOGNITION OF PERONOSPORA PARASITICA 13, NB-ARC domain-containing disease resistance protein (.1) AT3G14460 183 / 2e-47 LRR and NB-ARC domains-containing disease resistance protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G092600 [exp] 667 / 0 AT3G50950 483 / 4e-158 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) Potri.006G014400 [exp] 630 / 0 AT3G50950 435 / 1e-139 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) Potri.005G119800 [exp] 550 / 0 AT3G50950 1005 / 0.0 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) Potri.002G216800 [exp] 251 / 4e-71 AT3G07040 573 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134400 [exp] 233 / 1e-64 AT3G07040 427 / 3e-134 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.018G013500 [exp] 229 / 2e-63 AT3G07040 484 / 7e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.003G099000 [exp] 228 / 5e-63 AT3G07040 479 / 2e-154 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134475 [exp] 221 / 1e-60 AT3G07040 413 / 1e-129 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.003G150200 [exp] 216 / 4e-59 AT5G43470 420 / 2e-132 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014922 [exp] 236 / 8e-66 AT3G07040 523 / 1e-171 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10028639 [exp] 236 / 2e-65 AT3G07040 579 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10020016 [exp] 229 / 2e-63 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10018937 [exp] 228 / 7e-63 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10002945 [exp] 212 / 3e-57 AT3G07040 580 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10041243 [exp] 211 / 4e-57 AT3G07040 526 / 1e-172 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10014712 [exp] 186 / 2e-48 AT3G07040 492 / 3e-159 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10005218 [exp] 180 / 2e-46 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10039540 [exp] 173 / 2e-44 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10039509 [exp] 172 / 6e-44 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.011G129800.2 pacid=42781253 polypeptide=Potri.011G129802.1.p locus=Potri.011G129800 ID=Potri.011G129800.2.v4.1 annot-version=v4.1 ATGGCAGAGGCTATGATTGAGGCTCTTGCAGAGCAGTTGGTTCAAGTTCTCAAGAAGCCAGGAGAATATGTGCTTGAATTTCAAAGTGAGTTCAATGATA TGAAGACGCAGCTTGATCTGATGAAATCCTTTCTTGCTGATGCTTACAAGCTCAAAAGAAAGGAGGAAACTGTCAAGACAACCTTAAGCATGCTGCGAGA ACTGGTTTATGATGCGGAGGAAATATTGACAGATTGCCTGCTCAGAGCTGAATATCGGAAAGAGGGTTTTCAGTGCTGCAGCAACTTCACCCCACGTGAA CTGATCTTCCAGTATCGGACAGGAAAGAAGTTGAAAGATATCAATGAAAGAATTAAGAAGATGCAGAAGATCTTGAAAGCCTATTTCAAGACAATTGGAC AGCAAAGCATTCATGATGACCGCGGCAGCATAGGAAAGAGGTGGACATCACCAGTTTATGATGAATCTGCCATAGTTGGTTTGATAGAAGATACAGAAAA GATAATAGGCTGGATTCTTCCTGAAAACAGGATGTTGCACCAAGTTGGGATTAAGATTTTTTACAGTAAACAAGTAGTTGATCGCTTTGAGAAGAGGATT TGGGTATCTATATCTCAAACTATCAATGAAGAAGAGATCATGAAAACTTTGTTGAAACAATTGGGAGAGGATGTAAATGGGCTGGATATGGCTCAAATGC TGCCAAAGATTAAGCAACTGCTTGAGAATAAAAACTACCTGATTGTAATGGATGATAGGGAGGGATGGAGTAGTTGCATAATAATCAGAACACGAATAGA AAGTGTAGCGATAGAAATGGGCGTTGAGAAAGCACGGATTCATCAGCGGAGAATTCTCAACGAAGAAGAAAGCTACGCGTTGTTCTGCAAAATTGCATTT TCATCAAAAGAGGAAGCAAAACAGCATCCTGAGTTGGAAGAAGTTGGGAAAGTTATTGTGAAGAAATGCCATGGACTTCCTCTGGCTGTTAAGACCATCG GAGGCTTACTGAAATCGAAAGCTCAATCTACTGAAGTTTGGAGAAGGATTTGTCACAATTTCCATGATGCATTAACCGCAAAAGAAAGCGAAAATTCGGT CATGGCTTCTTTGCAGTTGAGCTATGATGAGCTTCCCATTCGTATGAAGCAATGTCTGTTGTGCTTTTCCCTATATCCGGAGGACTCTGAGATAGGCGCT GAGCAACTAGTTCATTGGTGGGTTGGAGAGGGTTTCATCGAGGGCAGAAACACATCAACCACGATGGAACTGGCCTTTGACTATCTATCAGAACTAATTA GCAGATGCCTAGTTGAAGTTGTGCAGCATAGAGGTTATGATGGAAGAGTCTACAGTTGCCGGATGCATGATTTGGTGAGGGATTTAACCATCAAAATTGC TAGAGAGGAGGGTTTTTGCAGCTTAGATGATCAAGGCAGGCAAAGAACCACAGCAAGATCTCGGCGTCTGAGTTTTACAAATGAAGCAGATGTAAGATCA ATGAACAAAAAGTCAAGGATCCGTGCATTGCTGATGATGACAAGTTCCCCAGTCCAATTTAATAGGAACATCGTAATAGAACATTGCATTGAAGACCTAT TGAATTGGATCAGTTCCATCGAACGCCTAGCAAAGCTGCCATTTTCAATCGGAAAGCTCCGCAACCTCCAGCTTCTTGTTCTGTCAGGATGCAACAACCT ACAAAAATTGCCCTTATCCATCACAGCCCTGCAGAAGCTCATTCTGTTGGATATAGGGCATTGTCCTATTCAATACCTTCCACAGGGAATAGGAAGGCTC TCGAATCTTCAAGAGCTATCTGGATTCAAGCTAGTGGGTGCCGATAACAAGGATGGTTGTCGACTAGCCGAGCTCCAAAATCTGTTACAACTTAGGGTAC TAAGAGTAAATATAAGTGAAGAGAGTGAAATTGCAGAGGAGGAACTAACAGTCCTAACACATCTTAAGCAACTTAAGGTTTTATCTATCAATTCCGAAGG ATGTGATAAAGAAGAGATCTTTCAGAATCTGGAGAGACTTTCCCCTCCTCCACATCTGGAAGAGTTGTACCTCAGGCATTACCGAGGAGTACTTACCCCA CAATGGATAAACCCCACATCACTCTGTCATTTGCAATATCTTTGCATGGAAAATGGAGACATCAAGTCCACAAGTCCTGTCTTTGAGGGCACTAATGGCA CCACTTGGAAGGTTGTGGGTTTATGTTTGAAGTTCCTTCCAAGGTTGCACATGGAGTGGGAAATGGTGCAGCGAGTGATGCCACGGATAAGGTATGTGGA GGTTAGCCACTGTTACATGTTGAAATCATTCCCTTGTAACATAGACAAACTAGGGGTGTGGAGAAAATGA
AA sequence Show only first row Show all	>Potri.011G129800.2 pacid=42781253 polypeptide=Potri.011G129802.1.p locus=Potri.011G129800 ID=Potri.011G129800.2.v4.1 annot-version=v4.1 MAEAMIEALAEQLVQVLKKPGEYVLEFQSEFNDMKTQLDLMKSFLADAYKLKRKEETVKTTLSMLRELVYDAEEILTDCLLRAEYRKEGFQCCSNFTPRE LIFQYRTGKKLKDINERIKKMQKILKAYFKTIGQQSIHDDRGSIGKRWTSPVYDESAIVGLIEDTEKIIGWILPENRMLHQVGIKIFYSKQVVDRFEKRI WVSISQTINEEEIMKTLLKQLGEDVNGLDMAQMLPKIKQLLENKNYLIVMDDREGWSSCIIIRTRIESVAIEMGVEKARIHQRRILNEEESYALFCKIAF SSKEEAKQHPELEEVGKVIVKKCHGLPLAVKTIGGLLKSKAQSTEVWRRICHNFHDALTAKESENSVMASLQLSYDELPIRMKQCLLCFSLYPEDSEIGA EQLVHWWVGEGFIEGRNTSTTMELAFDYLSELISRCLVEVVQHRGYDGRVYSCRMHDLVRDLTIKIAREEGFCSLDDQGRQRTTARSRRLSFTNEADVRS MNKKSRIRALLMMTSSPVQFNRNIVIEHCIEDLLNWISSIERLAKLPFSIGKLRNLQLLVLSGCNNLQKLPLSITALQKLILLDIGHCPIQYLPQGIGRL SNLQELSGFKLVGADNKDGCRLAELQNLLQLRVLRVNISEESEIAEEELTVLTHLKQLKVLSINSEGCDKEEIFQNLERLSPPPHLEELYLRHYRGVLTP QWINPTSLCHLQYLCMENGDIKSTSPVFEGTNGTTWKVVGLCLKFLPRLHMEWEMVQRVMPRIRYVEVSHCYMLKSFPCNIDKLGVWRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G50950		ZAR1	HOPZ-ACTIVATED RESISTANCE 1 (....		Potri.011G129800 [exp]	0	1
AT1G31490			HXXXD-type acyl-transferase fa...		Potri.001G128100 [exp]	2.82	0.8971
AT4G23170		CRK9, EP1	CYSTEINE-RICH RLK \(RECEPTOR-L...		Potri.007G120800 [exp]	3.87	0.8673
AT4G39210		APL3	Glucose-1-phosphate adenylyltr...		Potri.009G118800 [exp]	5.47	0.8429	Pt-APL3.2
					Potri.010G147200 [exp]	6.63	0.8667
					Potri.008G103700 [exp]	7.41	0.8585
AT3G05500			Rubber elongation factor prote...		Potri.013G017300 [exp]	10.19	0.8327	SRPP.2
AT3G54450			Major facilitator superfamily ...		Potri.001G027100 [exp]	10.58	0.8519
AT4G33040			Thioredoxin superfamily protei...		Potri.006G226900 [exp]	10.58	0.8320
AT5G66770	GRAS		GRAS family transcription fact...		Potri.005G123800 [exp]	10.72	0.8084
					Potri.007G020732 [exp]	12.32	0.8487

Compare expression of checked genes

Potri.011G129800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.