Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50600 505 / 1e-173 GRAS SCL5 scarecrow-like 5 (.1) AT5G48150 495 / 2e-171 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT2G04890 475 / 1e-164 GRAS SCL21 SCARECROW-like 21 (.1) AT4G17230 422 / 2e-142 GRAS SCL13 SCARECROW-like 13 (.1) AT1G21450 396 / 4e-131 GRAS SCL1 SCARECROW-like 1 (.1) AT1G07530 240 / 6e-70 GRAS SCL14, ATGRAS2 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) AT5G52510 229 / 9e-67 GRAS SCL8 SCARECROW-like 8 (.1) AT2G29060 229 / 1e-66 GRAS GRAS family transcription factor (.1) AT3G03450 224 / 9e-66 GRAS RGL2 RGA-like 2 (.1) AT1G66350 219 / 2e-64 GRAS RGL1 RGA-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G409500 [exp] 984 / 0 AT5G48150 518 / 3e-180 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Potri.014G164400 [exp] 516 / 1e-178 AT5G48150 716 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Potri.001G361700 [exp] 510 / 1e-176 AT1G50600 637 / 0.0 scarecrow-like 5 (.1) Potri.016G009700 [exp] 451 / 3e-153 AT4G17230 675 / 0.0 SCARECROW-like 13 (.1) Potri.006G016200 [exp] 433 / 3e-146 AT4G17230 641 / 0.0 SCARECROW-like 13 (.1) Potri.005G186500 [exp] 412 / 1e-137 AT1G21450 685 / 0.0 SCARECROW-like 1 (.1) Potri.002G073400 [exp] 406 / 2e-135 AT1G21450 707 / 0.0 SCARECROW-like 1 (.1) Potri.001G326000 [exp] 259 / 1e-77 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.017G142400 [exp] 250 / 2e-74 AT5G52510 438 / 7e-146 SCARECROW-like 8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035840 [exp] 745 / 0 AT5G48150 498 / 2e-172 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10036623 [exp] 660 / 0 AT5G48150 486 / 9e-169 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10016596 [exp] 514 / 4e-178 AT5G48150 624 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10012323 [exp] 513 / 8e-178 AT5G48150 659 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10006369 [exp] 497 / 7e-172 AT5G48150 633 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10000539 [exp] 444 / 9e-151 AT4G17230 617 / 0.0 SCARECROW-like 13 (.1) Lus10017554 [exp] 438 / 3e-148 AT4G17230 612 / 0.0 SCARECROW-like 13 (.1) Lus10042776 [exp] 393 / 2e-130 AT1G21450 682 / 0.0 SCARECROW-like 1 (.1) Lus10029747 [exp] 392 / 9e-130 AT1G21450 682 / 0.0 SCARECROW-like 1 (.1) Lus10003772 [exp] 377 / 2e-128 AT5G48150 439 / 2e-154 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03514 [poplar] [flax] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Potri.011G131100.4 pacid=42781424 polypeptide=Potri.011G131100.4.p locus=Potri.011G131100 ID=Potri.011G131100.4.v4.1 annot-version=v4.1 ATGGAATCACACCAGTATTTTGGATACGGTGTCACTGGTGCGGGCCTATCCTACTCATCTTCTTATCCGTCTGTTCCTTCCATGCCTAATAGGTTGTTTG GTTCATTGAAATTAGATATAGGAAATTCAACCAGCTCGCCTTTCTCAACTGAATTTGATTGTGATACATATGCTACTACGTTATGTGACAGCCAGGACCG CTACAGCTCCACAGAGAATCTCTCAGGTGAATCCAGCAGTTATTTTAGTAGGCTGAACCCTTCTGTGGACTGTCAACGAGAAAGTCTACTGCTCTTTCCT GGCGGCACTTCATTGCTGCAAGATGCAAGTTCTAGCCATAACATAAAACACACGTTGCTGAAATTGGAGACTACTCTAATGGGGCCAGACGATGATGAAG ATGTAAACACACCAAATACTTGTTTGGGGGGAAGTAGCAGGCCACCAACATCAGATCAGAAACCTAGGGCCTGGAGCCAGCAGCGCGAGGGTTCTCATGT TATTCAGACTCAGACGTCTTTTGTTTCAAGGCAGAGGCAGTTCGGCGAAGGTGCTCATGTTGAGAAACGCCAAAAGGAAATGGAAGAAGTACATTTTCAT GGCATTCCATCTGGAGATTTGAAGCAGCTGTTGATTGCATGTGCTAAAGCTCTTGCTGAAAACAAGGTGAATGATTTCGATAAGTTGATTGAGAAGGCCA GAAGTGTGGTGTCTATCAGTGGAGAGCCAATCCAGCGTCTTGGTGCGTACTTGGTAGAGGGATTGGTAGCAAGGAAGGAGTCATCAGGTACTAATATTTA TCGTGCCCTTAGGTGCAAGGAACCAGAAGGCAAGGACTTGCTGTCTTACATGCACACCCTGTATGAAATCTGCCCCTACCTGAAGTTTGGTTACATGGCA GCCAATGGAGCCATTGCTGAAGCATGCAGAAATGAGGACCACATCCATATAGTAGACTTCCACATTGCTCAGGGAACGCAGTGGATGACTCTCCTTCAAG CTCTTGCAGCCAGACCAGGTGGGGCTCCACATGTGCGTATCACAGGTATTGATGACCCTGTTTCTAAATATGCCCGAGGTGACGGTTTAGATGCAGTTGC GAGACGGTTGACTGCAATTTCTGAGAAATTTAATATCCCCATAGAGTTCCATGGAGTACCAGTTTATGCTCCAGATGTGACGAAGGAGATGTTTGATGTT AGGCCTGGAGAGGCTCTCGCTGTAAACTTTCCCTTGGAGCTCCACCACACTCCTGATGAGAGTGTTGATGTGAACAATCCAAGAGATGGGCTGCTTCGAA TGATCAAATCACTCAATCCCAAGGTGGTCACGTTGGTGGAGCAAGAATCTAATACAAACACAACCCCTTTCCTCACTCGGTTTGTAGAAACTCTCAACTA TTACTTGGCAATGTTTGAGTCCATTGATGTCAGATTGCCGAGAAACCAGAAGGAGCGAATTAGTGTGGAGCAGCATTGCCTAGCAAGGGATATAGTTAAT GTCATTGCTTGTGAGGGGAAGGAGAGGGAGGAGCGCCACGAGCTCTTCGGCAAATGGAAGTCTAGATTCATGATGGCCGGTTTCCGGCAATGCCCTTTGA GCTCCTATGTAAACTCTGTGATAAGGAGCCTGCTAAGGTGTTACTCAGAGCATTATACATTGGTGGAAATTGATGGAGCTATGCTCTTGGGATGGAAAGA TAGGAATTTGATCTCTGCTTCTGCCTGGTATTGA
AA sequence Show only first row Show all	>Potri.011G131100.4 pacid=42781424 polypeptide=Potri.011G131100.4.p locus=Potri.011G131100 ID=Potri.011G131100.4.v4.1 annot-version=v4.1 MESHQYFGYGVTGAGLSYSSSYPSVPSMPNRLFGSLKLDIGNSTSSPFSTEFDCDTYATTLCDSQDRYSSTENLSGESSSYFSRLNPSVDCQRESLLLFP GGTSLLQDASSSHNIKHTLLKLETTLMGPDDDEDVNTPNTCLGGSSRPPTSDQKPRAWSQQREGSHVIQTQTSFVSRQRQFGEGAHVEKRQKEMEEVHFH GIPSGDLKQLLIACAKALAENKVNDFDKLIEKARSVVSISGEPIQRLGAYLVEGLVARKESSGTNIYRALRCKEPEGKDLLSYMHTLYEICPYLKFGYMA ANGAIAEACRNEDHIHIVDFHIAQGTQWMTLLQALAARPGGAPHVRITGIDDPVSKYARGDGLDAVARRLTAISEKFNIPIEFHGVPVYAPDVTKEMFDV RPGEALAVNFPLELHHTPDESVDVNNPRDGLLRMIKSLNPKVVTLVEQESNTNTTPFLTRFVETLNYYLAMFESIDVRLPRNQKERISVEQHCLARDIVN VIACEGKEREERHELFGKWKSRFMMAGFRQCPLSSYVNSVIRSLLRCYSEHYTLVEIDGAMLLGWKDRNLISASAWY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G50600	GRAS	SCL5	scarecrow-like 5 (.1)		Potri.011G131100 [exp]	0	1
AT4G37640		ACA2	calcium ATPase 2 (.1)		Potri.007G055500 [exp]	2.44	0.9604	Pt-ACA2.1
AT4G39830			Cupredoxin superfamily protein...		Potri.007G088290 [exp]	2.44	0.9635
AT3G52430		PAD4, ATPAD4	ARABIDOPSIS PHYTOALEXIN DEFICI...		Potri.005G068700 [exp]	5.74	0.9480
AT2G22500		UCP5, ATPUMP5, ...	DICARBOXYLATE CARRIER 1, PLANT...		Potri.017G045332 [exp]	6.32	0.9435
AT1G01260	bHLH	bHLH013, INU4	basic helix-loop-helix (bHLH) ...		Potri.002G172101 [exp]	6.92	0.9328
AT3G45640		ATMAPK3, ATMPK3	mitogen-activated protein kina...		Potri.009G066100 [exp]	7.48	0.9332	Pt-MPK3.2
AT4G17070			peptidyl-prolyl cis-trans isom...		Potri.003G083900 [exp]	8.24	0.8821
AT4G33050		EDA39	embryo sac development arrest ...		Potri.006G226500 [exp]	9.16	0.9419
AT2G22500		UCP5, ATPUMP5, ...	DICARBOXYLATE CARRIER 1, PLANT...		Potri.017G045100 [exp]	9.94	0.9379
					Potri.018G078801 [exp]	10.77	0.9175

Compare expression of checked genes

Potri.011G131100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.