Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	GPT.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54800 584 / 0 ATGPT1, GPT1 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) AT1G61800 569 / 0 ATGPT2, GPT2 ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, glucose-6-phosphate/phosphate translocator 2 (.1) AT5G17630 317 / 2e-105 Nucleotide/sugar transporter family protein (.1) AT4G03950 290 / 5e-97 Nucleotide/sugar transporter family protein (.1) AT5G46110 239 / 4e-75 TPT, APE2 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) AT5G33320 211 / 2e-64 ARAPPT, CUE1 PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR, CAB UNDEREXPRESSED 1, ARABIDOPSIS THALIANA PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR, Glucose-6-phosphate/phosphate translocator-related (.1) AT3G01550 209 / 4e-64 ATPPT2 phosphoenolpyruvate (pep)/phosphate translocator 2 (.1) AT1G77610 97 / 3e-22 EamA-like transporter family protein (.1) AT1G21870 94 / 3e-21 GONST5 golgi nucleotide sugar transporter 5 (.1) AT5G05820 77 / 2e-15 Nucleotide-sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G420200 [exp] 731 / 0 AT5G54800 563 / 0.0 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) Potri.004G019900 [exp] 575 / 0 AT1G61800 592 / 0.0 ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, glucose-6-phosphate/phosphate translocator 2 (.1) Potri.013G071900 [exp] 311 / 5e-103 AT5G17630 526 / 0.0 Nucleotide/sugar transporter family protein (.1) Potri.008G095200 [exp] 239 / 5e-75 AT5G46110 454 / 5e-159 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Potri.004G048900 [exp] 228 / 2e-72 AT5G46110 539 / 0.0 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Potri.011G057800 [exp] 230 / 1e-71 AT5G46110 627 / 0.0 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Potri.001G347300 [exp] 228 / 5e-71 AT3G01550 411 / 1e-142 phosphoenolpyruvate (pep)/phosphate translocator 2 (.1) Potri.015G077900 [exp] 215 / 9e-66 AT5G33320 517 / 0.0 PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR, CAB UNDEREXPRESSED 1, ARABIDOPSIS THALIANA PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR, Glucose-6-phosphate/phosphate translocator-related (.1) Potri.012G082100 [exp] 211 / 3e-64 AT5G33320 458 / 1e-160 PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR, CAB UNDEREXPRESSED 1, ARABIDOPSIS THALIANA PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR, Glucose-6-phosphate/phosphate translocator-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011155 [exp] 617 / 0 AT5G54800 581 / 0.0 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) Lus10043060 [exp] 597 / 0 AT5G54800 580 / 0.0 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) Lus10018356 [exp] 548 / 0 AT1G61800 557 / 0.0 ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, glucose-6-phosphate/phosphate translocator 2 (.1) Lus10007653 [exp] 541 / 0 AT1G61800 559 / 0.0 ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, glucose-6-phosphate/phosphate translocator 2 (.1) Lus10019209 [exp] 297 / 5e-98 AT5G17630 480 / 2e-169 Nucleotide/sugar transporter family protein (.1) Lus10004312 [exp] 295 / 5e-97 AT5G17630 484 / 4e-171 Nucleotide/sugar transporter family protein (.1) Lus10015399 [exp] 239 / 3e-75 AT5G46110 642 / 0.0 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Lus10013978 [exp] 238 / 7e-75 AT5G46110 641 / 0.0 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Lus10037085 [exp] 236 / 8e-74 AT5G46110 530 / 0.0 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Lus10013083 [exp] 216 / 3e-66 AT3G01550 429 / 1e-149 phosphoenolpyruvate (pep)/phosphate translocator 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF03151 [poplar] [flax] TPT Triose-phosphate Transporter family
Representative CDS sequence Show only first row Show all	>Potri.011G135900.1 pacid=42780523 polypeptide=Potri.011G135900.1.p locus=Potri.011G135900 ID=Potri.011G135900.1.v4.1 annot-version=v4.1 ATGATTTGCAGTATCAAGCAATCTACTATAACCCCAACAATCAACGGATCTGACACTATTTTTCGCAGAAAAAACATGTCGGCAATACAAAGATCTTTGA TTCTGCCTTCACTCAATGCCAACAAGTCAAAACCAGTTCTTTCAATGTCAAAGCCTTTGCATGTGTCGAAGGTTGAGTCTTTTGCGTTGTCAAGGCCTCA AAAGAGGACCATGATCACATGCAAGGCTTATGAGGCCGATCGATCAGAGCCAATTGAAGCATCTGAGGTGAAGTCAGAGGCAGCAAAAAGGGTTAAAATT GGGATTTATTTTGCTACTTGGTGGGCTTTGAATGTTGTTTTCAACATATACAACAAGAAGGTCTTGAATGCTTTTCCATATCCATGGTTGACCTCCACTC TTTCTCTTGCTTGCGGATCTCTTATGATGATGATCTCGTGGGCTACAAGGATTGCTGAGGCACCAAACACTGATTTTGAGTTTTGGAAGACTTTATTCCC TGTTGCGGTGGCACATACAATTGGACATGTAGCAGCAACGGTGAGCATGTCGAAGGTTGCAGTTTCCTTTACCCATATTATTAAGAGTGGTGAGCCTGCT TTCAGCGTACTGGTTTCAAGGTTCCTATTGGGTGAGACTTTCCCTCCATCAGTTTACATGTCCCTTGTTCCAATCATTGGTGGTTGTGCACTGGCTGCTG TTACTGAGCTCAACTTCAACATGATTGGTTTTATGGGGGCCATGATCTCCAACTTGGCTTTTGTTTTCCGCAACATATTTTCAAAGAGAGGCATGAAGGG GAAGTCTGTTAGTGGGATGAACTACTATGCTTGTCTCTCTATCTTATCTCTCTTCATCCTCACACCTTTTGCTATCGCTGTAGAGGGACCACAGATGTGG GCTGCAGGTTGGCAAACAGCCCTATCCCAGATTGGACCAAATTTCATATGGTGGCTAGCAGCACAAAGTGTATTCTATCATCTTTACAATCAAGTGTCTT ACATGTCCCTGAATGAGATTTCTCCCTTGACCTTTAGCATTGGAAATACCATGAAGCGTATATCTGTCATAGTTTCATCCATTATCATTTTCCACACACC CATCCAACCTATCAATGCTCTTGGCGCTGCCATTGCTGTCCTTGGAACCTTCTTGTATTCCCAGGCAAAGCAGTAA
AA sequence Show only first row Show all	>Potri.011G135900.1 pacid=42780523 polypeptide=Potri.011G135900.1.p locus=Potri.011G135900 ID=Potri.011G135900.1.v4.1 annot-version=v4.1 MICSIKQSTITPTINGSDTIFRRKNMSAIQRSLILPSLNANKSKPVLSMSKPLHVSKVESFALSRPQKRTMITCKAYEADRSEPIEASEVKSEAAKRVKI GIYFATWWALNVVFNIYNKKVLNAFPYPWLTSTLSLACGSLMMMISWATRIAEAPNTDFEFWKTLFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPA FSVLVSRFLLGETFPPSVYMSLVPIIGGCALAAVTELNFNMIGFMGAMISNLAFVFRNIFSKRGMKGKSVSGMNYYACLSILSLFILTPFAIAVEGPQMW AAGWQTALSQIGPNFIWWLAAQSVFYHLYNQVSYMSLNEISPLTFSIGNTMKRISVIVSSIIIFHTPIQPINALGAAIAVLGTFLYSQAKQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54800		ATGPT1, GPT1	ARABIDOPSIS GLUCOSE 6-PHOSPHAT...		Potri.011G135900 [exp]	0	1	GPT.1
AT2G04235			unknown protein		Potri.001G315950 [exp]	1.00	0.7494
AT5G28490		OBO2, LSH1	ORGAN BOUNDARY 2, LIGHT-DEPEND...		Potri.013G046500 [exp]	7.21	0.7298
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.019G016116 [exp]	10.90	0.7235
AT3G48660			Protein of unknown function (D...		Potri.015G098300 [exp]	12.00	0.7471
AT4G18020	GARP	APRR2	PSEUDO-RESPONSE REGULATOR 2, C...		Potri.003G087700 [exp]	13.03	0.7484	PtpRR10
AT2G45960		PIP1;2, ATHH2, ...	TRANSMEMBRANE PROTEIN A, NAMED...		Potri.009G127900 [exp]	17.74	0.7279
AT5G28490		OBO2, LSH1	ORGAN BOUNDARY 2, LIGHT-DEPEND...		Potri.019G018600 [exp]	18.24	0.7207
AT1G76490		HMGR1, HMG1, At...	3-HYDROXY-3-METHYLGLUTARYL COA...		Potri.005G257000 [exp]	18.76	0.7096	Pt-HMG1.2
AT4G22670		ATHIP1, TPR11	tetratricopeptide repeat 11, H...		Potri.001G118900 [exp]	19.97	0.6086
AT1G55230			Family of unknown function (DU...		Potri.003G216500 [exp]	22.09	0.7217

Compare expression of checked genes

Potri.011G135900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.