Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16930 897 / 0 AAA-type ATPase family protein (.1) AT3G03060 892 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G18330 699 / 0 AAA-type ATPase family protein (.1) AT4G36580 687 / 0 AAA-type ATPase family protein (.1) AT3G19740 85 / 7e-17 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G50140 84 / 2e-16 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G02890 78 / 1e-14 AAA-type ATPase family protein (.1.2) AT2G27600 77 / 1e-14 ATSKD1, VPS4, SKD1 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) AT4G04180 77 / 2e-14 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G53540 76 / 2e-14 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G458200 [exp] 1051 / 0 AT3G03060 910 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G023900 [exp] 712 / 0 AT4G36580 868 / 0.0 AAA-type ATPase family protein (.1) Potri.005G122300 [exp] 189 / 6e-53 AT4G36580 285 / 2e-89 AAA-type ATPase family protein (.1) Potri.007G069800 [exp] 83 / 4e-16 AT1G50140 1215 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.010G237100 [exp] 79 / 3e-15 AT2G27600 702 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.013G016800 [exp] 77 / 7e-15 AT3G05530 800 / 0.0 regulatory particle triple-A ATPase 5A (.1) Potri.004G004000 [exp] 78 / 8e-15 AT4G04180 682 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G022216 [exp] 77 / 8e-15 AT2G27600 701 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.005G093300 [exp] 78 / 9e-15 AT3G19740 1209 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031787 [exp] 937 / 0 AT3G03060 985 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10031211 [exp] 865 / 0 AT3G03060 905 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10028305 [exp] 733 / 0 AT2G18330 920 / 0.0 AAA-type ATPase family protein (.1) Lus10041751 [exp] 719 / 0 AT2G18330 915 / 0.0 AAA-type ATPase family protein (.1) Lus10017405 [exp] 89 / 6e-18 AT3G19740 1223 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10010204 [exp] 84 / 2e-16 AT3G19740 1242 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10013429 [exp] 81 / 2e-15 AT1G50140 1151 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10036347 [exp] 78 / 1e-14 AT4G02480 1395 / 0.0 AAA-type ATPase family protein (.1) Lus10016124 [exp] 77 / 3e-14 AT5G03340 1511 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10031492 [exp] 76 / 4e-14 AT3G05530 820 / 0.0 regulatory particle triple-A ATPase 5A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA) CL0023 [poplar] [flax] PF12037 [poplar] [flax] DUF3523 Domain of unknown function (DUF3523)
Representative CDS sequence Show only first row Show all	>Potri.011G143300.1 pacid=42781766 polypeptide=Potri.011G143300.1.p locus=Potri.011G143300 ID=Potri.011G143300.1.v4.1 annot-version=v4.1 ATGGGAAAAACAAGTGAAATTGGAGGGCTAATCTCAGCAATAGCAGCTTCCTTTTCCTTTTCTCAATCAAATTTTGTTTCTTTTGCTGATGGCCCTTTTA GTTTCTCTCCTTTCTCTTCTTCAAACCCTTCTCCTTCCCCTCAATCTTCTTCGCCTTCTTCTTCTGTACAATCTCAGCCGTCCACTTTGCCTCAATCAAC GGCGGCCGATAATAGTGAGCCTGCTCCTAGAGCTCCTAGGAATGATCACCCACGAACGACATCTGCTGGGTTTGATCCTGTGGCTTTAGAGAGAGGTGCT AAGGTTTTGAGAGAGATTACCTCTTCCTCTCATGCTAAAAAGCTCTTTGAGACTATAAAGACGCAAGAAGCAACGAGGCAGGCAGAATTGGCTGAAAAAG CTGCAGAATTTAAGGCATTGCAAGCTCAGGCTGAAACTGAGAGACAAAGAGTGGTATATGATGAGCAGAGGAAGCTGGCACAGCACCAGGCACAAACTAA ATCCCAGATGGCTCGCTATGAGGATGAACTGGCTAGGAAGAGGATGCAGGCTGAAAATGAATATCAAAGAGCAAGGAATCAAGAGCTTGTGAAACTGCAA GAAGAATCATCAATAAGACAGGAGCAGGCTCGAAGAGCAACAGAAGAACAGATTCAAGCACAGCAGCGACAAACAGAGAGGGAAAAGGCTGAGATAGAAC GTGAAACAATTAGAGTGAGAGCTATAGCAGAAGCAGAAGGGAGAGCCCATGAAGCAAAGTTAGCTGAGGATGTTAATCGGCGAATTCTGAAGGATCGTGC AAATGCTGAAATGGAGAAATGGGTTGCTACAATAAACACTACCTTTGAACACATTGGAGGTGGTTTGCGAGCAGTTTTAACTGATCAAAACAAGCTGGTC GTTGTTGTGGGAGGAGTCACGGCACTTGCAGCAGGGATTTACACAACAAGAGAAGGTGCTAGAGTGATTTGGAGCTATGTAGATAGATTACTGGGACAAC CATCACTAATCAGGGAGTCCTCCAGGGGCAAATACCCTTGGTCAGGAGTTTTTACCCGTTCCTTGAGCACTTTATCAAGTGGTGCAAATAAGGGATCGAC TTCTAAAAATGGAAATGGATTCGGTGATGTGATTTTACATCCTTCTCTTCAAAAACGAATTGAACAGCTGGCTAATGCAACAGCCAATACAAAATCCCAT CAGGCTCCATTTCGGAACATGCTTTTCTATGGACCTCCAGGAACCGGGAAAACAATGGCTGCTAGAGAGTTAGCTAAAAAATCTGGCTTAGATTATGCTT TGATGACTGGTGGAGATGTTGCTCCGCTGGGATCACAGGCAGTCACAAAGATTCACCAGTTATTCGACTGGTCCAAGAAGTCTCGGAGGGGTTTGTTGCT ATTCATTGATGAAGCAGATGCATTTTTGTGCGAGCGGAACAAGACCTACATGAGTGAAGCTCAACGAAGTGCACTGAATGCCCTTCTTTTCCGCACTGGT GACCAGTCCAAGGATATAGTCCTTGCACTTGCCACAAACCGCCCTGGTGATCTTGATTCAGCTGTTTCAGACCGTATAGATGAAGTTCTGGAATTCCCTT TGCCTCAGACAGGAGAACGTTTCAAGCTGCTCAAGCTTTATCTGGATAAGTATATAGCTCAGGCTGGATCAAGAAAATCCGGTGGTTGGCTCCAAAATTT GTTCAAAAGACAACCACGGAAGATAGAAATAAAGGGACTGACCGATGATATCTTAAAGGAAGCAGCAGAAAAAACAGAGGGATTTTCTGGGAGAGAAATA GCCAAATTGATGGCAGGTGTCCAAGCAGCAGTTTATGGAAGTCCGAACTGTGTGCTTGACGCAACCCTGTTCAGAGAAGTGGTAGATTATAAAGTTGCAG AACATCAACAGAGGAGTAAACTGGCATCAAAATCAGAACAGAAGAGTCATTAG
AA sequence Show only first row Show all	>Potri.011G143300.1 pacid=42781766 polypeptide=Potri.011G143300.1.p locus=Potri.011G143300 ID=Potri.011G143300.1.v4.1 annot-version=v4.1 MGKTSEIGGLISAIAASFSFSQSNFVSFADGPFSFSPFSSSNPSPSPQSSSPSSSVQSQPSTLPQSTAADNSEPAPRAPRNDHPRTTSAGFDPVALERGA KVLREITSSSHAKKLFETIKTQEATRQAELAEKAAEFKALQAQAETERQRVVYDEQRKLAQHQAQTKSQMARYEDELARKRMQAENEYQRARNQELVKLQ EESSIRQEQARRATEEQIQAQQRQTEREKAEIERETIRVRAIAEAEGRAHEAKLAEDVNRRILKDRANAEMEKWVATINTTFEHIGGGLRAVLTDQNKLV VVVGGVTALAAGIYTTREGARVIWSYVDRLLGQPSLIRESSRGKYPWSGVFTRSLSTLSSGANKGSTSKNGNGFGDVILHPSLQKRIEQLANATANTKSH QAPFRNMLFYGPPGTGKTMAARELAKKSGLDYALMTGGDVAPLGSQAVTKIHQLFDWSKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG DQSKDIVLALATNRPGDLDSAVSDRIDEVLEFPLPQTGERFKLLKLYLDKYIAQAGSRKSGGWLQNLFKRQPRKIEIKGLTDDILKEAAEKTEGFSGREI AKLMAGVQAAVYGSPNCVLDATLFREVVDYKVAEHQQRSKLASKSEQKSH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16930			AAA-type ATPase family protein...		Potri.011G143300 [exp]	0	1
AT5G67630			P-loop containing nucleoside t...		Potri.016G096800 [exp]	1.73	0.8943
AT5G61770		PPAN	PETER PAN-like protein (.1.2.3...		Potri.002G204900 [exp]	3.87	0.8829
AT1G31660			unknown protein		Potri.011G112500 [exp]	4.47	0.8843
AT5G22100			RNA cyclase family protein (.1...		Potri.009G016000 [exp]	4.58	0.8711
AT5G64680			unknown protein		Potri.001G068500 [exp]	4.69	0.8496
AT2G47990		SWA1, EDA13, ED...	SLOW WALKER1, EMBRYO SAC DEVEL...		Potri.014G135600 [exp]	6.00	0.8800
AT1G80750			Ribosomal protein L30/L7 famil...		Potri.001G047400 [exp]	6.32	0.8667
AT1G20370			Pseudouridine synthase family ...		Potri.005G247000 [exp]	6.70	0.8434
AT5G16750		TOZ	TORMOZEMBRYO DEFECTIVE, Transd...		Potri.013G079600 [exp]	8.06	0.8727
AT2G37990			ribosome biogenesis regulatory...		Potri.005G231000 [exp]	10.58	0.8269

Compare expression of checked genes

Potri.011G143300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.