Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20760 436 / 9e-156 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26760 60 / 4e-10 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47130 56 / 4e-09 AtSDR3 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G03330 54 / 3e-08 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G51030 54 / 3e-08 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47120 52 / 9e-08 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29250 52 / 1e-07 AtSDR4 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G26770 52 / 2e-07 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G01800 51 / 3e-07 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT4G23430 51 / 3e-07 AtTic32-IVa translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G024300 [exp] 61 / 1e-10 AT1G52340 408 / 6e-145 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G199900 [exp] 58 / 1e-09 AT2G47140 256 / 1e-85 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.007G007300 [exp] 58 / 1e-09 AT5G10050 210 / 6e-67 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G105900 [exp] 58 / 2e-09 AT3G51680 412 / 4e-146 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G129100 [exp] 57 / 3e-09 AT3G51680 383 / 3e-134 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G236700 [exp] 56 / 6e-09 AT3G26760 342 / 2e-118 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.019G125600 [exp] 56 / 7e-09 AT3G51680 394 / 8e-139 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G106100 [exp] 54 / 2e-08 AT2G47140 234 / 9e-77 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206500 [exp] 54 / 3e-08 AT1G52340 246 / 4e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036204 [exp] 432 / 3e-154 AT4G20760 396 / 8e-140 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10038343 [exp] 400 / 1e-140 AT4G20760 378 / 8e-132 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016354 [exp] 66 / 3e-12 AT1G52340 389 / 4e-137 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10019777 [exp] 66 / 3e-12 AT1G52340 391 / 3e-138 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026419 [exp] 61 / 3e-10 AT3G51680 367 / 9e-128 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10032525 [exp] 54 / 5e-08 AT5G61830 450 / 1e-160 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10012575 [exp] 52 / 1e-07 AT3G26770 353 / 1e-122 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004984 [exp] 52 / 2e-07 AT5G06060 343 / 6e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10011729 [exp] 51 / 3e-07 AT5G65205 240 / 1e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10029438 [exp] 51 / 3e-07 AT3G51680 396 / 3e-139 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00106 [poplar] [flax] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Potri.011G157300.2 pacid=42781167 polypeptide=Potri.011G157300.2.p locus=Potri.011G157300 ID=Potri.011G157300.2.v4.1 annot-version=v4.1 ATGAAGCTTTGGCTTCCAAAGTCCCATGCATTCATGGCCACACCATTGGCTTTCAGATCAATAAGAAGGGCTTGTTTTGCATCTTCTGGTCTCAAATGGG AAGGTGGGGTCTCTATGGTTCAAGGAGCCTCTAGAGGAATTGGCCTTGAATTTGTTAAACAGCTTCTGGAAAAAAATGACAAAGGGCATGTTATTGCTAC TTGCCGAAATCCTAATGGGGCAACAGGACTTGTTGATTTGAAAAATAAGTTTGCTGAGCGCCTTAACATTATGCCAATAGACCTGACCATTGAAAGTACT ATAGAGGCATCTGCAAAGTTCATAAGGGAGAAATATGGCTCTCTGAACCTTCTGATTAATGCATCAGGAATCCTCTCAATACCAAATGTGTTGCTACCAG AAACAACATTGAGCAAAGTAGAGAGGTCATCCTTAATGCTGGCTTATGAGGTCAATGCTGTGGGTCCTATTCTAGCGATCAAGCACATGTGGCCTCTTCT GAAGGCTGGAGGAGGCTTTGGAACTGAAAGGGATGTTGCAGTGGTGGCCAATTTAAGTGCCAGAGTTGGATCAATTGGAGATAATCATCTAGGTGGTTGG CATTCATATCGATCTTCAAAGGCTGCTCTAAATCAGTTGACAAAAACTGTGTCGGTGGAGTTTGCGCGAAAAAGGGATCCAATTATATGCATCCTTTTGC ACCCAGGCACGGTAGACACAGATCTTTCTAAGCCATTTCAGAGAAATGTCCCCGATGGCAAGCTTTTCACCAAAGAGTTTTCAGTGCAGCAGCTCTTAAG CATCATTAATAATGCAAAGAGCCATGATAATGGGAAGTTTTTTGCCTGGGATGGCCAGGAAATTCCTTGGTAA
AA sequence Show only first row Show all	>Potri.011G157300.2 pacid=42781167 polypeptide=Potri.011G157300.2.p locus=Potri.011G157300 ID=Potri.011G157300.2.v4.1 annot-version=v4.1 MKLWLPKSHAFMATPLAFRSIRRACFASSGLKWEGGVSMVQGASRGIGLEFVKQLLEKNDKGHVIATCRNPNGATGLVDLKNKFAERLNIMPIDLTIEST IEASAKFIREKYGSLNLLINASGILSIPNVLLPETTLSKVERSSLMLAYEVNAVGPILAIKHMWPLLKAGGGFGTERDVAVVANLSARVGSIGDNHLGGW HSYRSSKAALNQLTKTVSVEFARKRDPIICILLHPGTVDTDLSKPFQRNVPDGKLFTKEFSVQQLLSIINNAKSHDNGKFFAWDGQEIPW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G20760			NAD(P)-binding Rossmann-fold s...		Potri.011G157300 [exp]	0	1
AT1G64980			Nucleotide-diphospho-sugar tra...		Potri.011G117500 [exp]	1.00	0.9104
AT2G34590			Transketolase family protein (...		Potri.004G129800 [exp]	5.47	0.8899	Pt-PDH.2
AT4G02580			NADH-ubiquinone oxidoreductase...		Potri.005G218000 [exp]	7.61	0.9102
AT3G48860			unknown protein		Potri.001G065800 [exp]	9.48	0.9002
AT4G08685		SAH7	Pollen Ole e 1 allergen and ex...		Potri.005G167900 [exp]	17.66	0.8929	Pt-SAH7.2
AT2G39780		RNS2	ribonuclease 2 (.1.2)		Potri.014G174400 [exp]	20.49	0.8815
AT3G61130		GAUT1, LGT1	galacturonosyltransferase 1 (....		Potri.014G073800 [exp]	23.66	0.8967
AT2G44610		RAB6, AtRABH1b,...	Ras-related small GTP-binding ...		Potri.001G147900 [exp]	24.16	0.8986
AT5G61240			Leucine-rich repeat (LRR) fami...		Potri.010G160700 [exp]	26.11	0.8898
AT5G43460			HR-like lesion-inducing protei...		Potri.010G073500 [exp]	32.72	0.8928

Compare expression of checked genes

Potri.011G157300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.