Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PtrAAP10
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23810 574 / 0 AAP7 amino acid permease 7 (.1.2) AT1G77380 513 / 2e-180 AAP3, ATAAP3 amino acid permease 3 (.1) AT5G09220 504 / 1e-176 AAP2 amino acid permease 2 (.1) AT5G63850 502 / 3e-176 AAP4 amino acid permease 4 (.1) AT1G58360 489 / 9e-171 NAT2, AAP1 NEUTRAL AMINO ACID TRANSPORTER 2, amino acid permease 1 (.1) AT1G10010 488 / 1e-170 AAP8, ATAAP8 amino acid permease 8 (.1) AT1G44100 488 / 1e-170 AAP5 amino acid permease 5 (.1) AT5G49630 460 / 1e-159 AAP6 amino acid permease 6 (.1) AT5G40780 162 / 6e-45 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT1G24400 158 / 2e-43 ATLHT2, AATL2, LHT2 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G470000 [exp] 874 / 0 AT5G23810 570 / 0.0 amino acid permease 7 (.1.2) Potri.011G167200 [exp] 674 / 0 AT5G23810 518 / 0.0 amino acid permease 7 (.1.2) Potri.001G470200 [exp] 650 / 0 AT5G09220 543 / 0.0 amino acid permease 2 (.1) Potri.005G068900 [exp] 521 / 0 AT5G09220 799 / 0.0 amino acid permease 2 (.1) Potri.011G167532 [exp] 518 / 0 AT5G23810 396 / 1e-132 amino acid permease 7 (.1.2) Potri.002G079500 [exp] 515 / 0 AT1G77380 766 / 0.0 amino acid permease 3 (.1) Potri.007G100100 [exp] 514 / 0 AT5G09220 768 / 0.0 amino acid permease 2 (.1) Potri.009G133600 [exp] 511 / 4e-179 AT5G09220 711 / 0.0 amino acid permease 2 (.1) Potri.002G079700 [exp] 507 / 6e-178 AT1G77380 756 / 0.0 amino acid permease 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010580 [exp] 674 / 0 AT5G23810 547 / 0.0 amino acid permease 7 (.1.2) Lus10027130 [exp] 597 / 0 AT5G23810 509 / 1e-178 amino acid permease 7 (.1.2) Lus10029707 [exp] 510 / 5e-179 AT1G77380 759 / 0.0 amino acid permease 3 (.1) Lus10036777 [exp] 503 / 1e-176 AT1G77380 684 / 0.0 amino acid permease 3 (.1) Lus10037150 [exp] 501 / 9e-176 AT1G77380 680 / 0.0 amino acid permease 3 (.1) Lus10029702 [exp] 500 / 5e-175 AT1G77380 706 / 0.0 amino acid permease 3 (.1) Lus10042740 [exp] 498 / 4e-174 AT1G77380 698 / 0.0 amino acid permease 3 (.1) Lus10018852 [exp] 491 / 2e-171 AT1G77380 702 / 0.0 amino acid permease 3 (.1) Lus10029703 [exp] 486 / 8e-170 AT1G44100 688 / 0.0 amino acid permease 5 (.1) Lus10007235 [exp] 463 / 1e-160 AT5G49630 720 / 0.0 amino acid permease 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF01490 [poplar] [flax] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Potri.011G167000.10 pacid=42780923 polypeptide=Potri.011G167000.10.p locus=Potri.011G167000 ID=Potri.011G167000.10.v4.1 annot-version=v4.1 ATGGGCGATAGAACAGAAGAATTGCCATTGCCATTGCTTGGAAGCTTTCATTCAGCTAATGAATCAGAAGAGCCTCTCAAAAGAACTGGGACCATATGGA CTGCAACAGCACATGTTATTACAGGAGTGATAGGGGCAGGAGTATTGTCACTTGCATGGAGCATAGCTCAACTAGGATGGATTGCAGGTCCTTTATGCAT GATATTTTTTGCAGCAATCACCATTGTTTCCACGTACCTTCTTTGTGACTGCTATAGATTTCCTGATCCTGAACATGGCCCCATCAGAAACAGGTCCTAC ATGGAAGCTGTCAAGTTTTATTTGGGAGAGAAAAGCCAAGTAGTGTGTGGAATATTTGCCGAGGAGAGCTTATATGGGTGTGGAATTGCCTATACCATTA CTTCTGCTGGTAGCATAAGAGCAATTCAAAGATCAAACTGTTACCATAGAGAAGGGCATAAAGCTTCATGTGAATATGGGGACGCTATTTATATGCTGCT ATTTGGAGCTGTTCAGATACTAGTGTCACAGATTCCTGATTTTCATAACATGGAATGGCTCTCGGTAATTGCAGCAATCATGTCCTTTACCTACTCTTTT ATCGGATTTGGACTTGGTGTTGCACAAGTTATAGAAAATGGGACGATTAAGGGGAGCATTGCTGGAGTCTCAGCTGCCACTACTGCCAATAAGTTATGGT TAGCATTTGAAGCACTGGGGGACATTGCTTTTGCCTATCCATACTCGATCATTCTGCTTGAGATACAGGATACTTTGAAGTCACCTCCACCAGAGAATAA GACCATGAAGAAGGCCTCTATGATTTCAATCTTCATCACAACTTTCTTTTACCTATGTTGTGGATGCTTTGGATACGCAGCCTTTGGCAACAATACACCT GGAAATCTCTTGACTGGGTTTGGGTTCTTTGAGCCTTACTGGCTCGTCGATTTAGCAAATGCTTGCGTTGTTCTTCATTTGGTGGGAGGATATCAGATAT ATAGTCAGCCTGTGTTTGCATTTGTGGAAGGATGGTTCAGTAGGAAATTTCCAAGCAGTGGTTTTGTGAATAACTTCCATTCCTTCAAACTTCCATTGAT TCGTCCTCTTCATATCAATCTTTTCCGGCTATGTTTCCGAACTGTATATGTTGCATCAACTACTGCTGTTGCAATGGCCTTCCCTTACTTCAACCAAGTT TTGGGAGTGCTTGGAGCCTTGAACTTTTGGCCTTTGGCAATATACTTTCCTGTGGAAATGTACTTTGTGCAGAAGAAAATAGGTGCTTGGACAAGAAAAT GGATTGTGCTGAGAACATTTAGCTTTGCTTGCTTGCTAATAACAATAGCAGGCTTACTTGGGTCAATTGAGGGACTTATAAGTGCTAAACTTGGCTGA
AA sequence Show only first row Show all	>Potri.011G167000.10 pacid=42780923 polypeptide=Potri.011G167000.10.p locus=Potri.011G167000 ID=Potri.011G167000.10.v4.1 annot-version=v4.1 MGDRTEELPLPLLGSFHSANESEEPLKRTGTIWTATAHVITGVIGAGVLSLAWSIAQLGWIAGPLCMIFFAAITIVSTYLLCDCYRFPDPEHGPIRNRSY MEAVKFYLGEKSQVVCGIFAEESLYGCGIAYTITSAGSIRAIQRSNCYHREGHKASCEYGDAIYMLLFGAVQILVSQIPDFHNMEWLSVIAAIMSFTYSF IGFGLGVAQVIENGTIKGSIAGVSAATTANKLWLAFEALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKKASMISIFITTFFYLCCGCFGYAAFGNNTP GNLLTGFGFFEPYWLVDLANACVVLHLVGGYQIYSQPVFAFVEGWFSRKFPSSGFVNNFHSFKLPLIRPLHINLFRLCFRTVYVASTTAVAMAFPYFNQV LGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWIVLRTFSFACLLITIAGLLGSIEGLISAKLG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23810		AAP7	amino acid permease 7 (.1.2)		Potri.011G167000 [exp]	0	1	PtrAAP10
AT1G04410		c-NAD-MDH1	cytosolic-NAD-dependent malate...		Potri.002G141700 [exp]	1.73	0.8782
AT1G60710		ATB2	NAD(P)-linked oxidoreductase s...		Potri.014G147700 [exp]	2.44	0.8163	Pt-ATB2.1
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Potri.007G080300 [exp]	6.63	0.7818
AT3G21550		AtDMP2	Arabidopsis thaliana DUF679 do...		Potri.008G115100 [exp]	8.36	0.8244
					Potri.019G038310 [exp]	9.16	0.8394
AT4G33625			unknown protein		Potri.017G043200 [exp]	10.39	0.7070
AT3G51780		ATBAG4	BCL-2-associated athanogene 4 ...		Potri.001G279500 [exp]	11.53	0.8163
AT2G26800			Aldolase superfamily protein (...		Potri.009G068600 [exp]	12.48	0.7016
AT1G36980			unknown protein		Potri.002G089300 [exp]	15.09	0.7539
AT1G66120			AMP-dependent synthetase and l...		Potri.006G036300 [exp]	17.97	0.7589

Compare expression of checked genes

Potri.011G167000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.