Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23810 396 / 1e-132 AAP7 amino acid permease 7 (.1.2) AT5G09220 390 / 3e-130 AAP2 amino acid permease 2 (.1) AT1G77380 380 / 3e-126 AAP3, ATAAP3 amino acid permease 3 (.1) AT5G63850 374 / 3e-124 AAP4 amino acid permease 4 (.1) AT1G44100 361 / 6e-119 AAP5 amino acid permease 5 (.1) AT1G10010 358 / 7e-118 AAP8, ATAAP8 amino acid permease 8 (.1) AT1G58360 352 / 2e-115 NAT2, AAP1 NEUTRAL AMINO ACID TRANSPORTER 2, amino acid permease 1 (.1) AT5G49630 342 / 2e-111 AAP6 amino acid permease 6 (.1) AT5G40780 121 / 3e-29 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT1G24400 114 / 6e-27 ATLHT2, AATL2, LHT2 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G470000 [exp] 496 / 1e-171 AT5G23810 570 / 0.0 amino acid permease 7 (.1.2) Potri.011G167000 [exp] 489 / 4e-169 AT5G23810 573 / 0.0 amino acid permease 7 (.1.2) Potri.011G167200 [exp] 466 / 4e-160 AT5G23810 518 / 0.0 amino acid permease 7 (.1.2) Potri.001G470200 [exp] 441 / 2e-150 AT5G09220 543 / 0.0 amino acid permease 2 (.1) Potri.005G068900 [exp] 384 / 1e-127 AT5G09220 799 / 0.0 amino acid permease 2 (.1) Potri.007G100100 [exp] 381 / 2e-126 AT5G09220 768 / 0.0 amino acid permease 2 (.1) Potri.002G079500 [exp] 380 / 2e-126 AT1G77380 766 / 0.0 amino acid permease 3 (.1) Potri.002G079700 [exp] 370 / 2e-122 AT1G77380 756 / 0.0 amino acid permease 3 (.1) Potri.005G181600 [exp] 370 / 2e-122 AT1G77380 746 / 0.0 amino acid permease 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008352 [exp] 658 / 0 AT5G23810 379 / 6e-125 amino acid permease 7 (.1.2) Lus10010580 [exp] 460 / 5e-157 AT5G23810 547 / 0.0 amino acid permease 7 (.1.2) Lus10027130 [exp] 402 / 2e-134 AT5G23810 509 / 1e-178 amino acid permease 7 (.1.2) Lus10042744 [exp] 374 / 7e-125 AT1G77380 667 / 0.0 amino acid permease 3 (.1) Lus10029707 [exp] 375 / 4e-124 AT1G77380 759 / 0.0 amino acid permease 3 (.1) Lus10028546 [exp] 370 / 2e-123 AT1G77380 552 / 0.0 amino acid permease 3 (.1) Lus10018852 [exp] 367 / 4e-121 AT1G77380 702 / 0.0 amino acid permease 3 (.1) Lus10037150 [exp] 360 / 2e-118 AT1G77380 680 / 0.0 amino acid permease 3 (.1) Lus10042740 [exp] 360 / 3e-118 AT1G77380 698 / 0.0 amino acid permease 3 (.1) Lus10036777 [exp] 359 / 4e-118 AT1G77380 684 / 0.0 amino acid permease 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF01490 [poplar] [flax] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Potri.011G167532.4 pacid=42780843 polypeptide=Potri.011G167532.4.p locus=Potri.011G167532 ID=Potri.011G167532.4.v4.1 annot-version=v4.1 ATGGCCATGGGAGAAGAAGCAGAAGAGCATCAACAGACACCGTTATTGTTGACTTCTGATCAGATCCCATCCAAGTCAACAATACTGTGCAATCCATTTT CAATCAAGAGAACTGGGACCGCATGGACTGCGGTGGCACACATAATAACTGGAGTGGTAGGGTCAGGGGTGCTATCACTAGCATGGAGCATGGCTCAGTT AGGATGGATTGCAGGTCCCTTGGCCATGTTGTTTTTTGCTGCAGTCACTCTTCTTTCCACTTTTCTTCTCTGCGATAGCTATCGATCCCCGGATCCTGAA TTTGGCCCCTCAAGAAACCGGTCTTACCGTGAAGCTGTTCATATAATATTAGGAGAAAAGAATGCTTTGATTTGTGGCTTTCTTCAACAAGTAGGCTTAT GTGGGATAGGAATTGCATATACTGTTACTGCTGCTATCAGCATGAGGGAGATTCAGAAATCAAACTGTTACCACAAACAAGGACATGGAGCTGCTTGTGA ATATGGAGACACTTTATATATGCTGCTATTTGGAGCTGCTCAGGTTCTGTTGTCCCAAATACCAGATTTCAACAGCATAAAATTTCTATCAGTTGTTGCT GCAGTCATGTCATTCACCTATTCTTTTATTGTATTTGCACTTGGTTTTGCCGAAGTAATAGTCTCCAAAATTACAGGAAATGGATATGTCAAGGGTAGCA TCACTGGATCCTCAACTCACAGTGTAGCTGGAAAAAGGAACGCATTGATATGTGGCGTCTTAGCACAAATAGGCTTATATGGAACAGGAATTGTCTACAC TATTACTACTGCTATCAGCATGAGGGCAATTCAGAAATCAAACTGTTATCACAAAGAAGGGCACGAGGCTACTTGTGAATATGGAGGCTCTTTATATATG CTGCTATTTGGAGTGGTTCAAGTTGTACTGTCCCAAATACCAGATTTCCATAACCTACAATGGCTATCAATTGTTGCTGCAATCATGTCAGTCAGCTATG CCTCTATAGGATTTGCACTTGGGTTTGCACAAGTGATAGCAAATGGATTTGTTAAGGGTGGGATCGCAGGAGTCTCAGCTTATAGGGCAGCTGATAAAGT ATGGAATGTATCTCAAGCACTTGGAGATATTGCATTTGCATATCCATATTCCCTAATTCTACTAGAAATACAGGATACTTTAAAATCACCTCCATCAGAA AGCAAGAGCATGAAGAAGGCATCGACAATAGCAGTTGTCGTCACCACATTTTTCTACCTCTGCTGCGGAGGCTTTGGTTATGCAGCTTTTGGAGAAAAAA CACCAGGGAACCTCTTGACAGGATTTGGATTTTATGAACCGTACTGGCTTATTGACCTGGCCAATGCTTGTATTGTGCTTCATCTAGTTGGTGGCTATCA GGTTTACAGTCAGCCATTATTTGCAGTCATTGAAAACTGGATTGCAGAGAAATATCCAGACAACAGGTTTTTGAATAAGAATCTCACCTACAAATTCCCA CGGTTGCCAGGTTTCCAATTGAATCTCCTCAGATTGTGTTTCCGAACTATCTACGTCATATCAACAACCACGATAGCAGTGATGTTTCCTTACTTCAACC AGGTTATTGGATTGGTAGGAGGATTCGGCTTTTGGCCCTTGACGGTATATTTTCCTGTGGAAATGTATTTTAAGCAGAAAAATATTGAGGCGTGGACAAT TAAGTGGATCATGCTTCGAGCCTTTAGCGTCCTCTGCTTTTTGGTGACAGCGTTTGCTTTGATTGGATCAGTTGAAGGGCTGATGAGTGCAAGATTGAGC TAA
AA sequence Show only first row Show all	>Potri.011G167532.4 pacid=42780843 polypeptide=Potri.011G167532.4.p locus=Potri.011G167532 ID=Potri.011G167532.4.v4.1 annot-version=v4.1 MAMGEEAEEHQQTPLLLTSDQIPSKSTILCNPFSIKRTGTAWTAVAHIITGVVGSGVLSLAWSMAQLGWIAGPLAMLFFAAVTLLSTFLLCDSYRSPDPE FGPSRNRSYREAVHIILGEKNALICGFLQQVGLCGIGIAYTVTAAISMREIQKSNCYHKQGHGAACEYGDTLYMLLFGAAQVLLSQIPDFNSIKFLSVVA AVMSFTYSFIVFALGFAEVIVSKITGNGYVKGSITGSSTHSVAGKRNALICGVLAQIGLYGTGIVYTITTAISMRAIQKSNCYHKEGHEATCEYGGSLYM LLFGVVQVVLSQIPDFHNLQWLSIVAAIMSVSYASIGFALGFAQVIANGFVKGGIAGVSAYRAADKVWNVSQALGDIAFAYPYSLILLEIQDTLKSPPSE SKSMKKASTIAVVVTTFFYLCCGGFGYAAFGEKTPGNLLTGFGFYEPYWLIDLANACIVLHLVGGYQVYSQPLFAVIENWIAEKYPDNRFLNKNLTYKFP RLPGFQLNLLRLCFRTIYVISTTTIAVMFPYFNQVIGLVGGFGFWPLTVYFPVEMYFKQKNIEAWTIKWIMLRAFSVLCFLVTAFALIGSVEGLMSARLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23810		AAP7	amino acid permease 7 (.1.2)		Potri.011G167532 [exp]	0	1
AT3G07570			Cytochrome b561/ferric reducta...		Potri.014G197500 [exp]	3.74	0.7572
AT1G47056		VFB1	VIER F-box proteine 1 (.1)		Potri.014G023500 [exp]	5.65	0.6792
AT5G02090			unknown protein		Potri.006G090100 [exp]	8.36	0.7322
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.010G054100 [exp]	9.48	0.7056
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Potri.014G096000 [exp]	15.16	0.6705	Pt-ADGT.3
AT3G04090		SIP1A, SIP1;1	small and basic intrinsic prot...		Potri.013G053400 [exp]	16.30	0.7162	SIP1.3
AT5G23750			Remorin family protein (.1.2)		Potri.003G124400 [exp]	17.14	0.7394
AT4G31860			Protein phosphatase 2C family ...		Potri.018G017701 [exp]	21.35	0.6994
AT1G72160			Sec14p-like phosphatidylinosit...		Potri.019G079500 [exp]	21.35	0.6347
					Potri.002G068100 [exp]	22.44	0.6596

Compare expression of checked genes

Potri.011G167532 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.