Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53350 709 / 0 CLPX CLP protease regulatory subunit X (.1) AT1G33360 590 / 0 ATP-dependent Clp protease (.1) AT5G49840 521 / 1e-179 ATP-dependent Clp protease (.1) AT5G19990 49 / 7e-06 ATSUG1, RPT6A regulatory particle triple-A ATPase 6A (.1) AT5G20000 49 / 8e-06 RPT6A AAA-type ATPase family protein (.1) AT3G02450 49 / 9e-06 cell division protein ftsH, putative (.1) AT5G52882 47 / 3e-05 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G64110 47 / 4e-05 DAA1 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT1G79560 47 / 4e-05 EMB36, EMB156, EMB1047, FTSH12 EMBRYO DEFECTIVE 36, EMBRYO DEFECTIVE 156, EMBRYO DEFECTIVE 1047, FTSH protease 12 (.1) AT5G64580 47 / 5e-05 EMB3144 EMBRYO DEFECTIVE 3144, AAA-type ATPase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G012900 [exp] 959 / 0 AT5G53350 675 / 0.0 CLP protease regulatory subunit X (.1) Potri.013G089500 [exp] 625 / 0 AT1G33360 742 / 0.0 ATP-dependent Clp protease (.1) Potri.004G229400 [exp] 553 / 0 AT5G49840 701 / 0.0 ATP-dependent Clp protease (.1) Potri.010G098300 [exp] 49 / 7e-06 AT5G19990 768 / 0.0 regulatory particle triple-A ATPase 6A (.1) Potri.008G144100 [exp] 49 / 8e-06 AT5G19990 741 / 0.0 regulatory particle triple-A ATPase 6A (.1) Potri.013G151600 [exp] 49 / 1e-05 AT3G01610 747 / 0.0 embryo defective 1354, cell division cycle 48C (.1) Potri.001G097600 [exp] 48 / 2e-05 AT1G64110 1159 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.012G035400 [exp] 48 / 2e-05 AT5G52882 1137 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G133700 [exp] 48 / 2e-05 AT1G64110 1145 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036701 [exp] 730 / 0 AT5G53350 706 / 0.0 CLP protease regulatory subunit X (.1) Lus10037222 [exp] 667 / 0 AT5G53350 651 / 0.0 CLP protease regulatory subunit X (.1) Lus10040561 [exp] 556 / 0 AT1G33360 721 / 0.0 ATP-dependent Clp protease (.1) Lus10000933 [exp] 547 / 0 AT1G33360 711 / 0.0 ATP-dependent Clp protease (.1) Lus10010691 [exp] 476 / 1e-162 AT5G49840 635 / 0.0 ATP-dependent Clp protease (.1) Lus10038001 [exp] 52 / 7e-07 AT2G45500 679 / 0.0 AAA-type ATPase family protein (.1.2) Lus10009233 [exp] 52 / 9e-07 AT2G45500 670 / 0.0 AAA-type ATPase family protein (.1.2) Lus10031169 [exp] 49 / 9e-06 AT1G79560 1356 / 0.0 EMBRYO DEFECTIVE 36, EMBRYO DEFECTIVE 156, EMBRYO DEFECTIVE 1047, FTSH protease 12 (.1) Lus10031745 [exp] 49 / 9e-06 AT1G79560 1357 / 0.0 EMBRYO DEFECTIVE 36, EMBRYO DEFECTIVE 156, EMBRYO DEFECTIVE 1047, FTSH protease 12 (.1) Lus10017762 [exp] 49 / 1e-05 AT5G19990 797 / 0.0 regulatory particle triple-A ATPase 6A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA) CL0671 [poplar] [flax] AAA_lid PF10431 [poplar] [flax] ClpB_D2-small C-terminal, D2-small domain, of ClpB protein
Representative CDS sequence Show only first row Show all	>Potri.012G015600.3 pacid=42783028 polypeptide=Potri.012G015600.3.p locus=Potri.012G015600 ID=Potri.012G015600.3.v4.1 annot-version=v4.1 ATGGCCGTTGCTGCAGTTAGAGGCAAACCCACCAAAGAAACTGCTTCTCAATTCAGATACTTTATGTTCAATTACATGCATGTGGGAAGTCGCTTGTCTA GTGCTCACTGTGCTAGCAAAACTACAAAATGGGATGACCATTTTGCAAATACTCCTCATCACTTCACTTCTTTCAAGCCTGTTTCGCTTTGCGGGGAGTT TGTTGAAAAGGGTACTCAATTGTTGGAAAATATGAGAAGTAGCGGTAATTCAAGTAAAGACTTTGATAGGAATTGGAGTCAGAAAGTGAGATATAATAGT GGTGATGGGTCTGGTTATGGCGACCCGCCAGAGGTGTGGGAACCACCTGGTGATGGTGTTGCAAAATTAAAGGTGACTGATGGAGGAGTGAATTTTAAGG TAGGGAGTAGAGATGGGTCTGGTTCAAAGGATGGGTCTTGGGGTGGATCAAAGTTGGGGAGTAGCTTTCCAACGCCGAAGGACATTTGTAAGGCACTTGA TAAGTTTGTCATTGGGCAACAGAGAGCTAAGAAGGTGCTCTCTGTTGCTGTTTACAATCACTACAAGAGGATCCATCTAGAGTCTGTTAAAAAATGTACA ACTTGGGAAGCTAGGTGCAATGCAGATTCAGGCAATGAAAAAGCAGAAACCATGGACGAGGAGGAAGTTGAACTTGAGAAAAGTAACATTCTTCTAATGG GTCCAACAGGTTCAGGGAAGACATTACTTGCCAAAACCTTGGCGCGGTTCGTGAATGTTCCTTTTGTTATTGCAGATGCAACTACTTTGACTCAGGCAGG ATATGTCGGGGAAGATGTGGATTCGATGTTATACAAACTACTGACAGCTGCTGACTATAACGTGGCAGCTGCTCAGCAAGGCATCATTTACATTGATGAA GTTGACAAGATCACAAAAAAGGCTGAGAGTGTTAACATTAGTAGAGATGTGTCGGGGGAGGGTGTACAGCAAGCATTATTGAAAATGCTTGAAGGAACAG TAGTCAATGTTCCAGATAAGGAAGCTCGAAAGCATCCTAGGGGAGACAATATTCAGATCAACACAAAGGATATTCTTTTCATATGTGGGGGTGCCTTTAT TGATTTGGAGAAGACCATTTCTGAAAGGCGCCAAGATTCATCGATTGGGTTTGGTGCACCAGTACGTGCAAACATGAGGACAGGTGGTGTTACGAGTGCT GCCATGACATCATCTTTATTGGAGACTGCTGAAAGCAGTGATCTTGTTTCATATGGTTTGATACCTGAATTTGTTGGAAGATTTCCTATCCTCGTCAGTT TATCAGCTCTCACTGAGGATCAACTTGTCCAGGTTCTGACAGAACCAAAGAATGCCCTTGGGAAGCAATACAGGAAGTTGTTCCAAATGAATGGTGTCAA GCTACATGTTACAGAACATGCTTTGAGATCAATTGCTATAAAAGCAATAACCAAAAATACTGGGGCTCGGGCCTTGCGGTCCATATTAGAGAACATCTTG ATGGATTCCATGTATGAGATTCCTGATGTAAGAAGGGGGGCTGATATAATAGATGCTGTTGTAGTTGATGAAGAGGCTATTGGACCTAAGCAACGTGGAG CCGGAGCCAAAATCCTGTACGGCAGGGGTGCGTTGGATCACTATCTTTCAAAAAACAAATTAAAGTCATCTGAGGCAACTGTGGAGGGTTCTGATGGAGA ACCAGAGGTGGAATCAGAGCTTCGTAAGATAGTTGCCAGCATGTAA
AA sequence Show only first row Show all	>Potri.012G015600.3 pacid=42783028 polypeptide=Potri.012G015600.3.p locus=Potri.012G015600 ID=Potri.012G015600.3.v4.1 annot-version=v4.1 MAVAAVRGKPTKETASQFRYFMFNYMHVGSRLSSAHCASKTTKWDDHFANTPHHFTSFKPVSLCGEFVEKGTQLLENMRSSGNSSKDFDRNWSQKVRYNS GDGSGYGDPPEVWEPPGDGVAKLKVTDGGVNFKVGSRDGSGSKDGSWGGSKLGSSFPTPKDICKALDKFVIGQQRAKKVLSVAVYNHYKRIHLESVKKCT TWEARCNADSGNEKAETMDEEEVELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVDSMLYKLLTAADYNVAAAQQGIIYIDE VDKITKKAESVNISRDVSGEGVQQALLKMLEGTVVNVPDKEARKHPRGDNIQINTKDILFICGGAFIDLEKTISERRQDSSIGFGAPVRANMRTGGVTSA AMTSSLLETAESSDLVSYGLIPEFVGRFPILVSLSALTEDQLVQVLTEPKNALGKQYRKLFQMNGVKLHVTEHALRSIAIKAITKNTGARALRSILENIL MDSMYEIPDVRRGADIIDAVVVDEEAIGPKQRGAGAKILYGRGALDHYLSKNKLKSSEATVEGSDGEPEVESELRKIVASM

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G53350		CLPX	CLP protease regulatory subuni...		Potri.012G015600 [exp]	0	1
AT2G38330			MATE efflux family protein (.1...		Potri.016G126000 [exp]	2.82	0.9358
AT2G40840		DPE2	disproportionating enzyme 2 (....		Potri.006G031700 [exp]	9.16	0.9167
AT3G46970		ATPHS2, PHS2	Arabidopsis thaliana alpha-glu...		Potri.009G041800 [exp]	9.48	0.9115
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Potri.002G113600 [exp]	15.49	0.9104
AT1G01320			Tetratricopeptide repeat (TPR)...		Potri.014G098600 [exp]	18.57	0.9063
AT5G42390		SPP	stromal processing peptidase, ...		Potri.002G235700 [exp]	21.21	0.9050
AT4G09660			unknown protein		Potri.014G176225 [exp]	21.21	0.8957
AT1G24040			Acyl-CoA N-acyltransferases (N...		Potri.008G146000 [exp]	24.65	0.8162
AT5G40380		CRK42	cysteine-rich RLK (RECEPTOR-li...		Potri.001G348000 [exp]	25.09	0.8896
AT5G13730		SIGD, SIG4	sigma factor 4 (.1)		Potri.009G057200 [exp]	27.98	0.8965

Compare expression of checked genes

Potri.012G015600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.