Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46620 536 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28580 265 / 5e-83 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G40010 254 / 1e-78 ASD, AATP1 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) AT4G25835 248 / 2e-76 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G50930 248 / 1e-75 BCS1 cytochrome BC1 synthesis (.1) AT3G28510 246 / 5e-75 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G57480 243 / 5e-74 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G40000 241 / 7e-74 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28570 240 / 1e-73 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28600 240 / 2e-73 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G007800 [exp] 871 / 0 AT2G46620 503 / 1e-175 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G102300 [exp] 596 / 0 AT2G46620 598 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G175600 [exp] 577 / 0 AT2G46620 627 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G024400 [exp] 322 / 3e-104 AT4G25835 362 / 4e-120 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G231200 [exp] 319 / 3e-103 AT4G25835 359 / 1e-118 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G032700 [exp] 259 / 4e-81 AT3G50930 437 / 1e-149 cytochrome BC1 synthesis (.1) Potri.007G020900 [exp] 257 / 7e-80 AT3G50930 561 / 0.0 cytochrome BC1 synthesis (.1) Potri.007G012400 [exp] 253 / 5e-79 AT3G50940 367 / 2e-123 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G020500 [exp] 249 / 4e-77 AT2G18193 511 / 1e-179 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008834 [exp] 556 / 0 AT2G46620 473 / 2e-163 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10030220 [exp] 540 / 0 AT2G46620 603 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10005991 [exp] 534 / 0 AT2G46620 598 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10022362 [exp] 423 / 2e-146 AT2G46620 362 / 8e-123 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10025989 [exp] 254 / 5e-80 AT3G50930 445 / 1e-153 cytochrome BC1 synthesis (.1) Lus10014284 [exp] 257 / 1e-79 AT3G50930 535 / 0.0 cytochrome BC1 synthesis (.1) Lus10024275 [exp] 256 / 3e-79 AT3G50940 434 / 2e-149 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015354 [exp] 254 / 2e-78 AT5G40010 598 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10041918 [exp] 253 / 3e-77 AT3G50930 383 / 2e-126 cytochrome BC1 synthesis (.1) Lus10035073 [exp] 242 / 1e-76 AT2G46620 280 / 7e-92 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA) CL0023 [poplar] [flax] PF14363 [poplar] [flax] AAA_assoc Domain associated at C-terminal with AAA
Representative CDS sequence Show only first row Show all	>Potri.012G020800.1 pacid=42782995 polypeptide=Potri.012G020800.1.p locus=Potri.012G020800 ID=Potri.012G020800.1.v4.1 annot-version=v4.1 ATGTTTATCATGAATCTTAGCAGCCCAATTCTTGTTCATTTCATTACAATCGTTGTCTTTTTAGTCATAATTAGATTTTTGGCAAAAACATCATTTCTAC ATATTCTTGCTAGATGTTGGAGATCATTTGAAGACAAGTTTTATGTTTACCAAATCTTCAAGGTTCCACAATTCAATGATCTTTCCCTAGAAAATCAACT CTACCACAAGGTCTCCACTTATCTAACCTCGCTGCCTGCCATCGAAGATTCTGATTTCACCAATCTGTTTTCGGGTTCGAAAGCGAATGACATCATCCTA CATCTCGACAAGAATCAAGTGATTCATGATAGTTTTCTTGGGGCTAGAGTGCATTGGAGCAATGAGAAATATTGTGAAGGAAATGGTAAGAGAACATTGG TGTTGAAGTTGAGAAAGAAAGACAAGAGAATGATTCTACGTCCTTACTTGCAGCACATTCTTTCGGTTGCGGATCAGGTTGAGCAGAAGAGCAAAGAAAT CAAATTGTTTATGAATCTAGAGAAGAACCCTTATGAAAATGGAAGGTGGAGATCAGTTCCTTTCACACATCCAGCCACCATGGATACAATGATCATGGAT GGAGACTTGAAGAACAAGGTAAAAGCTGATCTTGAATTGTTTTTGAAGTCTAAGCAGTATTATCACAGATTAGGTCATGTATGGAAAAGAAGTTATCTTC TTTATGGCGCGTCCGGGACAGGCAAATCCAGCTTCATTGCAGCCATGGCTAGATTCCTCAATTTTGATGTCTATGACATTAACATCTCCAAGGTTTCCGG TGATTCTGATCTCAAAATGCTCCTGCTGCAAACCACAAGTCGGTCCATGATTGTAATTGAGGATTTTGATAGGTTCTTGACTGAGAAATCAAGGGATGTG AGCTTGTCTGGGGTCTTGAATTTCATGGATGGAATTGTTTCGTGTTGCGGCGAGGAGCGTGTGATGGTGTTCACCATGAACTGTAAGGATCAAATTGATC AAGCAGTGTTAAGGCCTGGCAGGGTTGATGTTCATATTCAGTTCCCATTATGTAATTTCTCAGCATTTAAGAGTTTAGCCAATAATTACTTGGGAGTGAA GGAACACAAGCTTTTCTCACAAGTTGAAGAAATTTTACAATATGGTGGATCGAGTTTAAGTCCAGCTGAGATTGGTGAAATAATGATCTCTAACAGGAAT TCGCCGACCCGGGCTTTGAAATCAGTCATTTCAGCTTTGCAATCACAAACCAATAGCGGTGATTTAAGAGGGCCAAGCAAGGTTGGCCAAAGAATGACTG GCAGTAGGTCAGCTCGGTCCAGCAGGGATGAGACAGGTGAAACTGGAGGTGTGTTTAGCCAAGAAAGTAGTGTTCATGCTGTGAGGGAATTCAAGACATT GTATGGATTGTGGAGGATGGGAAGTAGAAGAAAGGAATCAATGGATTTAAGCTCTTCAGCAGAGAAGGAAGAATCACAGCAAGCAGCTTAA
AA sequence Show only first row Show all	>Potri.012G020800.1 pacid=42782995 polypeptide=Potri.012G020800.1.p locus=Potri.012G020800 ID=Potri.012G020800.1.v4.1 annot-version=v4.1 MFIMNLSSPILVHFITIVVFLVIIRFLAKTSFLHILARCWRSFEDKFYVYQIFKVPQFNDLSLENQLYHKVSTYLTSLPAIEDSDFTNLFSGSKANDIIL HLDKNQVIHDSFLGARVHWSNEKYCEGNGKRTLVLKLRKKDKRMILRPYLQHILSVADQVEQKSKEIKLFMNLEKNPYENGRWRSVPFTHPATMDTMIMD GDLKNKVKADLELFLKSKQYYHRLGHVWKRSYLLYGASGTGKSSFIAAMARFLNFDVYDINISKVSGDSDLKMLLLQTTSRSMIVIEDFDRFLTEKSRDV SLSGVLNFMDGIVSCCGEERVMVFTMNCKDQIDQAVLRPGRVDVHIQFPLCNFSAFKSLANNYLGVKEHKLFSQVEEILQYGGSSLSPAEIGEIMISNRN SPTRALKSVISALQSQTNSGDLRGPSKVGQRMTGSRSARSSRDETGETGGVFSQESSVHAVREFKTLYGLWRMGSRRKESMDLSSSAEKEESQQAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G46620			P-loop containing nucleoside t...		Potri.012G020800 [exp]	0	1
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.001G451100 [exp]	23.70	0.9260	Pt-RCOMT1.5
AT3G09020			alpha 1,4-glycosyltransferase ...		Potri.016G114200 [exp]	28.67	0.9253
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.017G133951 [exp]	38.27	0.9197
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.017G134001 [exp]	60.99	0.9119
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.017G134051 [exp]	64.22	0.9095
AT2G32210			unknown protein		Potri.001G439800 [exp]	67.83	0.9052
					Potri.019G016114 [exp]	92.95	0.9035
					Potri.008G212400 [exp]	100.53	0.8957
AT2G31335			unknown protein		Potri.019G012700 [exp]	103.87	0.8873
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Potri.018G105500 [exp]	112.00	0.9010

Compare expression of checked genes

Potri.012G020800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.