Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27680 322 / 4e-109 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G53540 308 / 1e-103 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G50140 133 / 1e-34 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G64110 130 / 1e-33 DAA1 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT3G19740 128 / 6e-33 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G02890 128 / 9e-33 AAA-type ATPase family protein (.1.2) AT4G02480 127 / 1e-32 AAA-type ATPase family protein (.1) AT4G28000 123 / 3e-31 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G52882 122 / 4e-31 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G24860 121 / 2e-30 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G007700 [exp] 359 / 9e-124 AT4G27680 615 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.012G027901 [exp] 137 / 1e-40 AT5G53540 182 / 2e-57 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.012G027101 [exp] 130 / 4e-38 AT4G27680 166 / 3e-51 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.012G017760 [exp] 127 / 1e-36 AT4G27680 164 / 1e-50 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G069800 [exp] 132 / 2e-34 AT1G50140 1215 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.001G097600 [exp] 129 / 4e-33 AT1G64110 1159 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.012G096300 [exp] 128 / 5e-33 AT4G02480 1153 / 0.0 AAA-type ATPase family protein (.1) Potri.003G133700 [exp] 128 / 7e-33 AT1G64110 1145 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.015G094100 [exp] 127 / 2e-32 AT4G02480 1128 / 0.0 AAA-type ATPase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008835 [exp] 329 / 1e-111 AT4G27680 649 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10022361 [exp] 316 / 3e-106 AT4G27680 632 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10024692 [exp] 134 / 6e-35 AT1G64110 1176 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10010204 [exp] 134 / 1e-34 AT3G19740 1242 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10028752 [exp] 132 / 3e-34 AT1G64110 1165 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10017535 [exp] 131 / 8e-34 AT1G64110 1157 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10040976 [exp] 130 / 1e-33 AT3G19740 472 / 2e-154 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10027551 [exp] 126 / 3e-32 AT5G52882 1136 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10039309 [exp] 126 / 3e-32 AT5G52882 1140 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10017405 [exp] 125 / 1e-31 AT3G19740 1223 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Potri.012G025351.1 pacid=42783442 polypeptide=Potri.012G025351.1.p locus=Potri.012G025351 ID=Potri.012G025351.1.v4.1 annot-version=v4.1 ATGAATCAAATGATGCGGTGGAATCACGGTTACAATTGCCCGAGCCAGCCGCACGTGTCGCCAAAAGGTGGTGGAGCGACTAACTTAGACCAAGTTTTTG CAAGAACCAGTGCAGCTTTAACTTGTTTGGTATTATTTGCTAGGCTCCGGAAACCTGACCCGAATCATGAAGCATCAAAGAAAGCCCTTGAACATAAGAA GGAAATCGATAAGCGTTTGGGTCATTCCCTTATCCAAACAAACCCTTATGAGGGATGTATGTGTGTCAAATCAATTGGAGGATTGGAATCTATCAAGCAA GCTTTGTATGAATTGGTGATTCTTCCTCTACGAAAACCTGAGCTCTTCTCACATGGGAAACTTCTTGGCACCGGGAAGACCATGCTTGCAAAAGCTATTG TCAGAGAGTCTGGAGTTATTTTTATAAATACGAGGATCTCCAATCTGATAAGCAAGTGGTTCGATGATGCACAAAAGCTCGGTGATGCTGTTGTTTTTAG CCTGGCTTATAAACTCCAGCCTGCTTTTATATTAATTGACGAGGTTGACAGTTTTCTGGGGCAGCGTCGTACTACAGACCATGAGGCATTAACCAATATG AAGACTAAGTTCATGGCATTATGGAATGGGTTTACTATAGATCAGAATGCACAAGAGATGAAAATCGAAAGCAAAATTGACTTTGACTACATAGCAAGTT TGTGTGAGAGCTATACTAGTTCAGATTTTCTTGAACCTTGCAAGAAAGCACCAAGGCCATTGTCCCAGTCAGACTTGCAGAGAGTTCTTGGCACATCAAC TAAGACCAGGGTTGCTGCAAATGAGTACAGTAGTTCAAGCTCACATTCACCTAGGTGGCCAGTATCTCAAATTTTGAATCTTCAGTCGGATAATCAGGAC CCTTGA
AA sequence Show only first row Show all	>Potri.012G025351.1 pacid=42783442 polypeptide=Potri.012G025351.1.p locus=Potri.012G025351 ID=Potri.012G025351.1.v4.1 annot-version=v4.1 MNQMMRWNHGYNCPSQPHVSPKGGGATNLDQVFARTSAALTCLVLFARLRKPDPNHEASKKALEHKKEIDKRLGHSLIQTNPYEGCMCVKSIGGLESIKQ ALYELVILPLRKPELFSHGKLLGTGKTMLAKAIVRESGVIFINTRISNLISKWFDDAQKLGDAVVFSLAYKLQPAFILIDEVDSFLGQRRTTDHEALTNM KTKFMALWNGFTIDQNAQEMKIESKIDFDYIASLCESYTSSDFLEPCKKAPRPLSQSDLQRVLGTSTKTRVAANEYSSSSSHSPRWPVSQILNLQSDNQD P

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27680			P-loop containing nucleoside t...		Potri.012G025351 [exp]	0	1
					Potri.008G007100 [exp]	2.44	0.8803
AT5G18900			2-oxoglutarate (2OG) and Fe(II...		Potri.010G027201 [exp]	2.82	0.8738
AT3G42170			BED zinc finger ;hAT family di...		Potri.011G125951 [exp]	3.00	0.9021
AT3G22560			Acyl-CoA N-acyltransferases (N...		Potri.007G102900 [exp]	4.47	0.8712
AT1G30220		ATINT2	ARABIDOPSIS THALIANA INOSITOL ...		Potri.004G133340 [exp]	4.69	0.8658
AT5G46190			RNA-binding KH domain-containi...		Potri.011G082500 [exp]	5.29	0.8867
AT1G23550		SRO2	similar to RCD one 2 (.1)		Potri.006G231600 [exp]	6.08	0.8260
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Potri.010G057900 [exp]	8.30	0.8515
AT1G74260		PUR4	purine biosynthesis 4 (.1)		Potri.008G058600 [exp]	8.66	0.8809
AT3G26020			Protein phosphatase 2A regulat...		Potri.008G180000 [exp]	10.19	0.8639

Compare expression of checked genes

Potri.012G025351 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.