Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53200 102 / 6e-29 MYB TRY TRIPTYCHON, Homeodomain-like superfamily protein (.1) AT2G30420 87 / 8e-23 MYB ETC2 ENHANCER OF TRY AND CPC 2, Homeodomain-like superfamily protein (.1) AT2G30424 84 / 1e-21 MYB TCL2 TRICHOMELESS 2, Homeodomain-like superfamily protein (.1) AT2G46410 84 / 1e-21 MYB CPC CAPRICE, Homeodomain-like superfamily protein (.1) AT1G01380 83 / 2e-21 MYB ETC1 ENHANCER OF TRY AND CPC 1, Homeodomain-like superfamily protein (.1) AT2G30432 82 / 6e-21 MYB TCL1 TRICHOMELESS1, Homeodomain-like superfamily protein (.1) AT4G01060 78 / 2e-19 MYB CPL3, ETC3 ENHANCER OF TRY AND CPC 3, CAPRICE-like MYB3 (.1.2.3) AT5G52600 58 / 1e-10 MYB AtMYB82 myb domain protein 82 (.1) AT3G13540 57 / 3e-10 MYB ATMYB5, ATM2 myb domain protein 5 (.1) AT5G14750 55 / 2e-09 MYB WER1, WER, AtMYB66 WEREWOLF 1, WEREWOLF, myb domain protein 66 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G022000 [exp] 121 / 2e-36 AT5G53200 104 / 2e-30 TRIPTYCHON, Homeodomain-like superfamily protein (.1) Potri.014G096300 [exp] 101 / 2e-28 AT2G46410 114 / 1e-34 CAPRICE, Homeodomain-like superfamily protein (.1) Potri.002G168900 [exp] 100 / 5e-28 AT5G53200 122 / 2e-37 TRIPTYCHON, Homeodomain-like superfamily protein (.1) Potri.004G015100 [exp] 71 / 6e-17 AT2G46410 71 / 1e-17 CAPRICE, Homeodomain-like superfamily protein (.1) Potri.007G122800 [exp] 69 / 6e-16 AT2G46410 69 / 3e-17 CAPRICE, Homeodomain-like superfamily protein (.1) Potri.017G037000 [exp] 68 / 1e-15 AT2G46410 69 / 4e-17 CAPRICE, Homeodomain-like superfamily protein (.1) Potri.004G021300 [exp] 66 / 5e-15 AT1G01380 67 / 1e-16 ENHANCER OF TRY AND CPC 1, Homeodomain-like superfamily protein (.1) Potri.011G026300 [exp] 66 / 5e-15 AT1G01380 68 / 9e-17 ENHANCER OF TRY AND CPC 1, Homeodomain-like superfamily protein (.1) Potri.003G064600 [exp] 59 / 2e-11 AT5G14750 166 / 5e-52 WEREWOLF 1, WEREWOLF, myb domain protein 66 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038822 [exp] 87 / 7e-23 AT5G53200 96 / 1e-27 TRIPTYCHON, Homeodomain-like superfamily protein (.1) Lus10014933 [exp] 86 / 1e-22 AT2G46410 96 / 1e-27 CAPRICE, Homeodomain-like superfamily protein (.1) Lus10005949 [exp] 81 / 2e-20 AT4G01060 91 / 2e-25 ENHANCER OF TRY AND CPC 3, CAPRICE-like MYB3 (.1.2.3) Lus10018366 [exp] 62 / 6e-13 AT2G46410 67 / 2e-15 CAPRICE, Homeodomain-like superfamily protein (.1) Lus10007643 [exp] 61 / 8e-13 AT2G46410 65 / 3e-15 CAPRICE, Homeodomain-like superfamily protein (.1) Lus10018414 [exp] 65 / 1e-12 AT4G05120 548 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10006647 [exp] 64 / 1e-12 AT5G52600 186 / 6e-59 myb domain protein 82 (.1) Lus10038092 [exp] 64 / 1e-12 AT5G52600 185 / 1e-58 myb domain protein 82 (.1) Lus10039173 [exp] 58 / 2e-10 AT3G13540 244 / 3e-81 myb domain protein 5 (.1) Lus10033438 [exp] 57 / 3e-10 AT1G22640 194 / 2e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.012G031200.2 pacid=42783893 polypeptide=Potri.012G031200.2.p locus=Potri.012G031200 ID=Potri.012G031200.2.v4.1 annot-version=v4.1 ATGCCTAAAAGTCAACAAACATACATTTTCTTTTTTGGGTGGGTAGCATACGTGCTATTACTTCAGCATAAATTTGGTCTTTTGGACTTGAGGTTGCTTC AAAACTCAATTTGCATCAATAGTTTCCCATCAACTTTGGGAAACTATTATCTTTCTCTATTTTCTTGCCCTGCTTTCTCTGCTTCTTTTTTGATGGAAAG TATGGACCGCCGCCGACGCCGACGCCGCAAACAAGCTAAAATTAACAATTCTGAGTCTGAAGAGGTCAGTAGTATTGAATGGGAGTTTATAGACATGAGT GAACAAGAGGAAGACCTCATTTACAGAATGTATAGGCTTGTTGGAGAAAGGTGGGATTTGATAGCTGGAAGGATTCCAGGCCGGAAAGCAGAAGAAATAG AGAGGTTTTGGATAATGAAACACCGTGAAGGGTTTGCTGAGAAACGAAGGTTGCATAGCAAAGCGAAGTCTAAGACTTATCGTTAG
AA sequence Show only first row Show all	>Potri.012G031200.2 pacid=42783893 polypeptide=Potri.012G031200.2.p locus=Potri.012G031200 ID=Potri.012G031200.2.v4.1 annot-version=v4.1 MPKSQQTYIFFFGWVAYVLLLQHKFGLLDLRLLQNSICINSFPSTLGNYYLSLFSCPAFSASFLMESMDRRRRRRRKQAKINNSESEEVSSIEWEFIDMS EQEEDLIYRMYRLVGERWDLIAGRIPGRKAEEIERFWIMKHREGFAEKRRLHSKAKSKTYR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G53200	MYB	TRY	TRIPTYCHON, Homeodomain-like s...		Potri.012G031200 [exp]	0	1
AT4G27450			Aluminium induced protein with...		Potri.001G403000 [exp]	4.00	0.8377
AT4G24250		ATMLO13, MLO13	MILDEW RESISTANCE LOCUS O 13, ...		Potri.001G078800 [exp]	11.53	0.8661
AT5G22580			Stress responsive A/B Barrel D...		Potri.009G148100 [exp]	14.28	0.8574
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.001G340400 [exp]	18.86	0.8583
AT3G18670			Ankyrin repeat family protein ...		Potri.005G057900 [exp]	27.56	0.8511
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.017G071000 [exp]	29.12	0.8520
AT5G37790			Protein kinase superfamily pro...		Potri.017G126500 [exp]	29.44	0.8354
AT5G51160			Ankyrin repeat family protein ...		Potri.014G050700 [exp]	34.11	0.8492
AT3G50660		PSC1, CYP90B1, ...	SUPPRESSOR OF NPH4 2, SHADE AV...		Potri.014G171700 [exp]	36.94	0.8216
					Potri.018G040000 [exp]	38.43	0.8483

Compare expression of checked genes

Potri.012G031200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.