Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27950 214 / 6e-67 AP2_ERF CRF4 cytokinin response factor 4 (.1) AT5G53290 177 / 2e-52 AP2_ERF CRF3 cytokinin response factor 3 (.1) AT4G23750 143 / 2e-39 AP2_ERF TMO3, CRF2 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) AT4G11140 137 / 1e-37 AP2_ERF CRF1 cytokinin response factor 1 (.1) AT3G61630 127 / 1e-33 AP2_ERF CRF6 cytokinin response factor 6 (.1) AT2G46310 120 / 2e-31 AP2_ERF CRF5 cytokinin response factor 5 (.1) AT1G71130 114 / 2e-30 AP2_ERF CRF8 cytokinin response factor 8, Integrase-type DNA-binding superfamily protein (.1) AT1G22985 99 / 1e-24 AP2_ERF CRF7 cytokinin response factor 7, Integrase-type DNA-binding superfamily protein (.1) AT2G33710 96 / 5e-23 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2) AT2G47520 94 / 6e-23 AP2_ERF AtERF71, ERF71, HRE2 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 2, Arabidopsis thaliana ethylene response factor 71, Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G023200 [exp] 574 / 0 AT4G27950 211 / 9e-66 cytokinin response factor 4 (.1) Potri.002G167400 [exp] 177 / 9e-53 AT4G27950 162 / 3e-47 cytokinin response factor 4 (.1) Potri.001G094800 [exp] 175 / 1e-51 AT4G23750 177 / 2e-52 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) Potri.003G136300 [exp] 171 / 8e-50 AT4G11140 160 / 1e-46 cytokinin response factor 1 (.1) Potri.014G094500 [exp] 167 / 1e-48 AT2G46310 163 / 3e-48 cytokinin response factor 5 (.1) Potri.019G131300 [exp] 144 / 3e-40 AT4G27950 139 / 2e-38 cytokinin response factor 4 (.1) Potri.013G158500 [exp] 137 / 2e-37 AT4G27950 124 / 1e-32 cytokinin response factor 4 (.1) Potri.009G101900 [exp] 97 / 7e-23 AT4G34410 119 / 2e-32 redox responsive transcription factor 1 (.1) Potri.001G067600 [exp] 96 / 7e-23 AT5G13330 130 / 1e-37 related to AP2 6l (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027573 [exp] 222 / 3e-69 AT4G27950 209 / 1e-64 cytokinin response factor 4 (.1) Lus10039324 [exp] 208 / 1e-63 AT4G27950 210 / 8e-65 cytokinin response factor 4 (.1) Lus10033938 [exp] 166 / 3e-48 AT4G23750 201 / 6e-62 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) Lus10032353 [exp] 159 / 2e-45 AT4G23750 207 / 2e-64 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) Lus10017550 [exp] 153 / 9e-44 AT4G23750 172 / 2e-51 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) Lus10018756 [exp] 122 / 3e-30 AT1G64280 506 / 2e-170 SALICYLIC ACID INSENSITIVE 1, NON-INDUCIBLE IMMUNITY 1, ARABIDOPSIS NONEXPRESSER OF PR GENES 1, regulatory protein (NPR1) (.1) Lus10003037 [exp] 100 / 1e-24 AT2G46310 122 / 8e-34 cytokinin response factor 5 (.1) Lus10014054 [exp] 99 / 1e-23 AT4G34410 139 / 4e-40 redox responsive transcription factor 1 (.1) Lus10011830 [exp] 92 / 2e-22 AT3G23230 134 / 4e-41 Integrase-type DNA-binding superfamily protein (.1) Lus10005149 [exp] 92 / 6e-22 AT4G27950 106 / 6e-28 cytokinin response factor 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF00847 [poplar] [flax] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Potri.012G032900.1 pacid=42782754 polypeptide=Potri.012G032900.1.p locus=Potri.012G032900 ID=Potri.012G032900.1.v4.1 annot-version=v4.1 ATGATAGACCAAAGTATCCTATGTCCCATAAAGTACACTGAGCACAAAAAAGTTACAAAAAAATTCACTAAACAACCCTTAAAGCCTAATATGGTACACT CCGATGACCGATGCCGCTCACCGGAACCCTCAAACCCGGCACCAAGGCTTGTTAGAGTGACAGTCACCGACCATGACGCCACTGACTCCTCCAGTGACGA AGAGGGAGAGTTGTTTGGCCGGCAAAGAGTGAAAAGATATGTGAGCGAGATCAACATCCAACCGGCAGCTTTCTGCAAAGAAACCAATGTCATTGCTACT ACTATTGCCAAAAACCGGAAAAGAAGTGTTGGTGATATCCCTCAAAAGCCAGCGAAAAGACTTACTGCCCAATCAACCACCAATGGCAGAAAGTTCCGTG GCGTTCGGCAAAGGCCCTGGGGTAAATGGGCTGCAGAGATCAGAGATCCTGCTAGACGTGTGCGGTTATGGCTAGGGACTTACGACACCGCTGAGGAGGC TGCAAGAGTGTATGATAATGCTGCCATCAAGCTTCGAGGGCCAGATGCTTTAACAAATTTCACCACACCACCTAGTAGGGAGGAGGATCAAGAAGAAGAG AAAAGTAGTCCAGTGGAGGAATCAGAAGAAAAGAAGCCAGAGATTAACGTGGAAACAGTATCTGGCTCCGGCTATGAATCTGCTGACGAGTCTCACAGTC TGTCATCTCCAAAATCTGTGCTCACTTTCAGACTACCTTCGGCTGAATCACACAAACCACCGTCTCAACCTTTCCAAGAAGCTAAAATGGAGCCAAAGCA TCAAGACAATGAAGAAGCCTTCGGCGAGAGCAATTTGTCTGATTATTTACCACTGGACTCGCCATTTCTTGATGATTTTTTCAATTTTGGAACATCAGGG CCAACCCTCTTTGACGATCAAGTTATAGCGACGACGACGACAGCAACATCAATTTTCCAAGAGAGTATTATGTGTGATCAAGATTTTGGCGACATATTTC TTGACCCACTTCAAGATTTTACTTCATTACCATCGGTTTGCCAAGAGGATGATGATTTTTTCCATTTCTTAAACTCAGAACCTCTTACAGCACTTTGA
AA sequence Show only first row Show all	>Potri.012G032900.1 pacid=42782754 polypeptide=Potri.012G032900.1.p locus=Potri.012G032900 ID=Potri.012G032900.1.v4.1 annot-version=v4.1 MIDQSILCPIKYTEHKKVTKKFTKQPLKPNMVHSDDRCRSPEPSNPAPRLVRVTVTDHDATDSSSDEEGELFGRQRVKRYVSEINIQPAAFCKETNVIAT TIAKNRKRSVGDIPQKPAKRLTAQSTTNGRKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAARVYDNAAIKLRGPDALTNFTTPPSREEDQEEE KSSPVEESEEKKPEINVETVSGSGYESADESHSLSSPKSVLTFRLPSAESHKPPSQPFQEAKMEPKHQDNEEAFGESNLSDYLPLDSPFLDDFFNFGTSG PTLFDDQVIATTTTATSIFQESIMCDQDFGDIFLDPLQDFTSLPSVCQEDDDFFHFLNSEPLTAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27950	AP2_ERF	CRF4	cytokinin response factor 4 (....		Potri.012G032900 [exp]	0	1
AT4G27950	AP2_ERF	CRF4	cytokinin response factor 4 (....		Potri.015G023200 [exp]	1.73	0.7367
AT3G07870			F-box and associated interacti...		Potri.011G037312 [exp]	4.00	0.6443
AT5G09800			ARM repeat superfamily protein...		Potri.007G110600 [exp]	12.80	0.7305	PHOR1-2
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Potri.001G241900 [exp]	13.74	0.6935
AT1G71695			Peroxidase superfamily protein...		Potri.005G195600 [exp]	14.69	0.6266
					Potri.007G133200 [exp]	18.97	0.7522
AT4G36750			Quinone reductase family prote...		Potri.007G029600 [exp]	22.44	0.6788
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.018G134700 [exp]	22.97	0.6112
AT3G46280			protein kinase-related (.1)		Potri.005G043700 [exp]	23.23	0.6394
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Potri.001G045800 [exp]	28.77	0.6270

Compare expression of checked genes

Potri.012G032900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.