Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40540 726 / 0 ATKUP2, ATKT2, TRK2, SHY3, KT2 potassium transporter 2 (.1.2) AT1G70300 712 / 0 KUP6 K+ uptake permease 6, K+ uptake permease 6 (.1) AT5G14880 704 / 0 Potassium transporter family protein (.1) AT3G02050 641 / 0 ATKT4, ATKUP3, KUP3 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) AT2G30070 571 / 0 ATKUP1, ATKT1P, ATKT1 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) AT4G23640 570 / 0 ATKT3, KUP4, TRH1 TINY ROOT HAIR 1, Potassium transporter family protein (.1) AT1G31120 541 / 0 KUP10 K+ uptake permease 10, K+ uptake permease 10 (.1) AT2G35060 540 / 0 KUP11 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) AT4G13420 531 / 2e-178 HAK5, ATHAK5 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) AT1G60160 506 / 5e-168 Potassium transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G034200 [exp] 1404 / 0 AT2G40540 741 / 0.0 potassium transporter 2 (.1.2) Potri.010G094300 [exp] 742 / 0 AT1G70300 1228 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Potri.008G147400 [exp] 741 / 0 AT1G70300 1221 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Potri.019G056500 [exp] 729 / 0 AT2G40540 1272 / 0.0 potassium transporter 2 (.1.2) Potri.013G083400 [exp] 720 / 0 AT2G40540 1225 / 0.0 potassium transporter 2 (.1.2) Potri.014G144900 [exp] 706 / 0 AT3G02050 1175 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Potri.002G237500 [exp] 703 / 0 AT3G02050 1179 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Potri.009G073500 [exp] 622 / 0 AT2G30070 1092 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Potri.003G148200 [exp] 618 / 0 AT2G30070 831 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030857 [exp] 760 / 0 AT1G70300 1249 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10030632 [exp] 748 / 0 AT1G70300 1238 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10030539 [exp] 720 / 0 AT2G40540 1245 / 0.0 potassium transporter 2 (.1.2) Lus10012992 [exp] 717 / 0 AT1G70300 1188 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10034215 [exp] 698 / 0 AT2G40540 1239 / 0.0 potassium transporter 2 (.1.2) Lus10014531 [exp] 601 / 0 AT5G14880 1098 / 0.0 Potassium transporter family protein (.1) Lus10018324 [exp] 559 / 0 AT2G35060 1212 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Lus10038361 [exp] 514 / 8e-172 AT2G35060 1164 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Lus10036221 [exp] 503 / 1e-167 AT2G35060 1173 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Lus10027004 [exp] 492 / 3e-163 AT4G13420 828 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF02705 [poplar] [flax] K_trans K+ potassium transporter
Representative CDS sequence Show only first row Show all	>Potri.012G043501.1 pacid=42782915 polypeptide=Potri.012G043501.1.p locus=Potri.012G043501 ID=Potri.012G043501.1.v4.1 annot-version=v4.1 ATGGATCATCCACCGAGTCCCACTACATCCTCTGATAGACTTAAGGAGACCTGGAGGCACGCACTCGTTCTGTCATTTCAAACTCTTGGAGTTGTGTATG GTCGCTTGAGCACTGCTCCATTATATGTTTTTGGGACGATTCAAACGAAAGATTTCAAATCCAATGAGATTGCATATGAATACTTCTCTTTTATTTTCTG GACTCTCACTGTTGTTTCTTTACTCAAGTATGCCTTCATTGTACTGAGGGCTGATGATAATGGAGAGGGTGGTGTTTTTGCTCTGTACTCATTATTATGC AGGCATGCTAAAGTGGGTCTGATTCCAAACGACACAAGCACCAGTGAAGTTATGCAACATGAAGAAGAAAACACTTTTAGGGGAAAAGTTGAATCAAGGG CAAGAAGAGCCATAAAAAACCATAGAAGTAGTCATTATTTGATGCTGTTCACGGCATTATTTGGTGCTTGCATGATAATTGGAGATGGGGTGATAACCCC ATCTATTTCAGTGTTATCAGCTTCATCAGGTCTTCAACGTTCATTATCAGAAATTAAATACTCCTCCTCGCCAGATGCACAAGGAGCCATATCAGATGCT TTAAAAAAATATGTACCAGTGCCGTCTGCTTGTGTCATAACAGTATGCCTCTTTATACTGCAGCACTATGGGAGTCATAAAATCGGGTTTATGTTTGCCC CAATTGTCACTATATGGCTTCTGTTTATTGGTGGAGTGGGTATATATAATATATTCCACTGGAACCCTGAAATCTTCTCTGCATTGTCGCCTGTATACAT GTACAGATTTGTAAGAAATATCAACAAAGACCGTTGGAAGTCACTGGGTAGCATTCTTCTCTGCATAGCAGGATCAGAAACAATGTTCACAGATTTAGGT CATTTCTCTAAGAGATCAATCAAGAGAACATTTGTCTGCTTGATTTATCCAGTTTTAATTCTGTGCTATGCTGGTCAAGCTGCTTTTATCTCCAAACACT GGAATGGTCCTGAAAATTTTAATCATCTAAGTGAATCCATACCTGAACATCTTCGTCATGTCTTCATACTGCTATCTCTTCTTGCTTCGGCTGTGGGAAG CCAAGCAACAATAACAGCCAGCTTCTCCATTATAAACCAGTGCCGTGCACTTAGTTGTTTCCCCAGAGTAAAAGTTATACATACATCAGATAAGAGACAT GGACAGGTTTATATTCCAGATGTCAACTGGTTATTGATGGCCCTTAGTCTCTCCATCACTCTTGGTTTCCATGATATAACTAGAATTGCAAATGCAGCAG GTATGGCAATTGTTTTTGGGATGATAGTAACAACTTGTATGATGTCCCTTGTGATGGCTCTGTACTGGGAGAAGAGTTTGTTCATATCAGGATTCTTTTT GATGTTCTTTGGTTTTGTTGAGGCTGTATATGTATCGGCATGTATGTTGAGCTTTCATAAAGGAGCTTGGTATCTATTTGTCCTTTTAGCTGTTTCCTTC ACTGTAATGCTTGCATGGCATTATGGAACTATGAAGAAATACGAGTTTGATTTGCAAAACAAGGTTTCTACAGAATGGCTCACAGATTATAGCCCAAGCC TAGGAGTTTCCAGAGTACCTGGAATTGGCTTAATCTACACTGATATCGTAATGGGAATCCCAGCTTTCTTCTCACATTTCATCACAAATCTTCCTGCATT TCATCAGGTGCTGATCTTCGTGTCCTTCAAGCCCCAACCAGTTCCTTGTGTGCCTCCCAGTCAGCGATATTGTGTAGGCAGGGTTGGTGGCAAAGACTAC AGGATTTACAGATGCATTGTGAGATATGGGTACTGTGATCAGGTTAGAGACACAGATGATTTTGAGGAACAGATTATTGGCTCAATCGGAGAATACATTT CCTTGGATGAAAGCGATTGTGAATCGCTGACTTCTCCTGAAGGAAGAATGGTGATTGTTGGGACGCCATTGTTGGAAGGACATGCGTTGATTCCAGTAGA TGATACCAACTTGTTTTCCGGTTCCACAAATGCAGGTAACAATGAAACTCTGGCAATTCCAGAGGGAGAATTGATTGGACGAAATGCTCCTGTTAGGAGA AAAAAGGTTCGCTTTCTAATTCCAGAAAGTAGTCCTAGATTGCGGGTATCTGTCAGGGATGAGCTACAAGAACTGATTAATGCCAGGGAAAGTGGCACTG CATATTTCCTAGGTCAGTCGCATTTAACAGTTCGTGATGGTTCTAACTTTTTTAAGAAATTCCTGATTATGGCCTACGTCTTTCTTGATAAAAATTGCCG TGAACCTCCGGTGGCATTGAATATCCCTCATGCTGCTCTCGTAGAGGTTGGCATGGTGTATATTATATAA
AA sequence Show only first row Show all	>Potri.012G043501.1 pacid=42782915 polypeptide=Potri.012G043501.1.p locus=Potri.012G043501 ID=Potri.012G043501.1.v4.1 annot-version=v4.1 MDHPPSPTTSSDRLKETWRHALVLSFQTLGVVYGRLSTAPLYVFGTIQTKDFKSNEIAYEYFSFIFWTLTVVSLLKYAFIVLRADDNGEGGVFALYSLLC RHAKVGLIPNDTSTSEVMQHEEENTFRGKVESRARRAIKNHRSSHYLMLFTALFGACMIIGDGVITPSISVLSASSGLQRSLSEIKYSSSPDAQGAISDA LKKYVPVPSACVITVCLFILQHYGSHKIGFMFAPIVTIWLLFIGGVGIYNIFHWNPEIFSALSPVYMYRFVRNINKDRWKSLGSILLCIAGSETMFTDLG HFSKRSIKRTFVCLIYPVLILCYAGQAAFISKHWNGPENFNHLSESIPEHLRHVFILLSLLASAVGSQATITASFSIINQCRALSCFPRVKVIHTSDKRH GQVYIPDVNWLLMALSLSITLGFHDITRIANAAGMAIVFGMIVTTCMMSLVMALYWEKSLFISGFFLMFFGFVEAVYVSACMLSFHKGAWYLFVLLAVSF TVMLAWHYGTMKKYEFDLQNKVSTEWLTDYSPSLGVSRVPGIGLIYTDIVMGIPAFFSHFITNLPAFHQVLIFVSFKPQPVPCVPPSQRYCVGRVGGKDY RIYRCIVRYGYCDQVRDTDDFEEQIIGSIGEYISLDESDCESLTSPEGRMVIVGTPLLEGHALIPVDDTNLFSGSTNAGNNETLAIPEGELIGRNAPVRR KKVRFLIPESSPRLRVSVRDELQELINARESGTAYFLGQSHLTVRDGSNFFKKFLIMAYVFLDKNCREPPVALNIPHAALVEVGMVYII

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40540		ATKUP2, ATKT2, ...	potassium transporter 2 (.1.2)		Potri.012G043501 [exp]	0	1
AT5G16490		RIC4	ROP-interactive CRIB motif-con...		Potri.013G086600 [exp]	8.06	0.7815
AT1G76140			Prolyl oligopeptidase family p...		Potri.005G247300 [exp]	8.71	0.7525
AT5G03540		ATEXO70A1	exocyst subunit exo70 family p...		Potri.010G241800 [exp]	13.85	0.7323
AT1G28960		ATNUDX15, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.004G053200 [exp]	16.52	0.7892
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Potri.004G002400 [exp]	19.89	0.7678
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Potri.006G141500 [exp]	21.21	0.7132
AT1G58520		RXW8	lipases;hydrolases, acting on ...		Potri.002G113800 [exp]	29.29	0.7672	RXW8.1
AT1G15780			unknown protein		Potri.003G025500 [exp]	29.56	0.7329
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Potri.001G054600 [exp]	33.98	0.7704
AT3G04810		ATNEK2	NIMA-related kinase 2 (.1.2)		Potri.005G051600 [exp]	34.48	0.7440

Compare expression of checked genes

Potri.012G043501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.