Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27170 1187 / 0 transmembrane receptors;ATP binding (.1.2) AT1G27180 1164 / 0 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G36930 498 / 2e-154 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G17680 498 / 1e-153 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G69550 428 / 4e-127 disease resistance protein (TIR-NBS-LRR class) (.1) AT5G44510 402 / 3e-119 TAO1 target of AVRB operation1 (.1) AT4G16890 402 / 1e-118 BAL, SNC1 SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1, BALL, disease resistance protein (TIR-NBS-LRR class), putative (.1) AT2G14080 398 / 8e-118 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT3G25510 398 / 1e-114 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G08450 380 / 2e-111 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G043600 [exp] 2051 / 0 AT1G27170 1195 / 0.0 transmembrane receptors;ATP binding (.1.2) Potri.015G043501 [exp] 866 / 0 AT1G27170 534 / 5e-176 transmembrane receptors;ATP binding (.1.2) Potri.019G001602 [exp] 545 / 3e-173 AT5G36930 778 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.007G099700 [exp] 526 / 5e-166 AT5G36930 562 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G001600 [exp] 524 / 3e-165 AT5G36930 721 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002400 [exp] 517 / 2e-164 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.012G135700 [exp] 520 / 1e-163 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G070700 [exp] 523 / 4e-163 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G004599 [exp] 520 / 4e-163 AT5G36930 627 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005171 [exp] 511 / 2e-159 AT1G27170 576 / 0.0 transmembrane receptors;ATP binding (.1.2) Lus10001375 [exp] 511 / 4e-157 AT5G36930 464 / 3e-141 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10018616 [exp] 507 / 2e-156 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10039850 [exp] 505 / 2e-156 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10014207 [exp] 458 / 1e-139 AT5G36930 446 / 5e-135 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10030839 [exp] 457 / 4e-139 AT4G12010 552 / 7e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10029628 [exp] 462 / 5e-139 AT1G27180 462 / 1e-138 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10029722 [exp] 451 / 4e-138 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10004257 [exp] 450 / 1e-135 AT5G36930 446 / 7e-136 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10005373 [exp] 443 / 3e-135 AT5G36930 404 / 8e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.012G053200.1 pacid=42782884 polypeptide=Potri.012G053200.1.p locus=Potri.012G053200 ID=Potri.012G053200.1.v4.1 annot-version=v4.1 ATGTCCAACGGCCTGATAGTTTCATCGTCTCCGGCAGCGCTGAGGCTCCACTGGGATGTGTTCTTAAGTTTTCGCGGAGAAGACACCCGGGACAGCTTCA CCAAACATCTCTACGATTCTTTAAATAAGCAAGAGATCAGGGTCTTCTTAGATGCCTCTGGAATGATTCAGGGAGATGAGATTGCTCCAACTTTAATGGA GGCAATTCAAGATTCAGCCTCATCGATCATTATTCTTTCACCAAGGTATGCCAATTCTCATTGGTGTCTCGAGGAGCTGGCAAGAATATGCGAGCTGAGG AGGCTGATCCTGCCTGTTTTCTACCAAGTTGACCCATCTAATGTCAGAAGACAGAAGGGTCCTTTCGAGCAAGATTTTGAGAGTCATTCCAAGAGGTTTG GAGATGATAAGGTGGTGAAGTGGAGAGCAGCAATGAATAAAGTTGGTGGCATTTCTGGTTTCGTTTTTGACACCAGCGGAGAAGATCATTTGATTCGGCG ATTGGTCAATAGGGTTTTGCAAGAATTGAGAAAAACCCCGGTAGGTATAGCTACTTATACGGTTGGACTGGATTCCCGCTTAGAAAAGTTGAAGATGAGG TTCACAGATGATAAATCAAATCGCGTACAAGTTCTTGGACTTTATGGAATGGGCGGGATTGGTAAAACAACTCTTGCCACAGCTCTCTTCAATAAACTTG TTGGTCATTTTGAAAGTCGCTGTTTCATCTCAAACATTAAAGATATTTCTCAAGAAGATGGTGGTTTAGTAACGCTGCAGAACAAGCTTCTTGGTGATCT TTTCCCAGACAGGCCTCCTGTAAATGATATTAATGATGGTATTGCTGTAATCAAGGAGCTGTGTCATGAGAAGCGAGTGCTGGTTGTTTTAGATGATGTG GATGATGTAAACCAGCTGAATGTATTAGCAGGAAAGAGAGATTGGTTTGGTGAAGGAAGTAGAGTTATTGTTACCACAAGAAACAGAGATGTTCTTGTTG AACATCTTGTGAACGAGTTTTACGAGGTTAGAGAGTTAGGTTCCTCGGAAGCCTTAAAACTTTTTAGTTATCACGCACTAAGAAGAGATAACCCCACAGA AGAATATCTAAATATATCCAAGGAGATTGTATCTCTCACAGGAGGACTTCCTCTGGCATTGGAAGTGTTTGGTTCTACTTTGTTTAATGAGAGAGGGATA AAGAAATGGGAAGATGTCCTGAAAAAATTGCGAGAAATTCGACCTGGTAATCTTCAGGATGTCTTAAGAATAAGTTTTGATGGATTGGATGATGAAGAGA AGTGTGTATTCCTTGACATTGCTTGCTTGTTTATTAAAATGAGGATGAAGAGAGAGGAGGCTATTGATATTTTGAATGGTTGTGGCTTTAGGGCTGAGAC AGCAATCACAGTTCTGACAGTAAAATGTCTCATTAAAATTGGTGGAGATTATGAATTATGGATGCATGATCAACTTAGAGACATGGGAAGACAAATTGTT CGAGATGAAAACCTTTTAGATCCTGGTATGCGTAGTAGGCTTTGGGATCGCGGCGATATCATGACAATGCTGAAGCACAAGAAGGGAACAAGACATGTAC AAGGTTTAATCCTTGACTTTGAAAAGAAGAATTATGTCAGAACTCAAAAAATTTCTTGGGTTAAAGCACTTAATCCGAGTTCTTCACTAGACTACTTGAT TGAAAAATGTAAGCTGTTTCTTCAACTAAGAGCAGAGGAGGGAGAGCTGATACTTGACACTGAAGCCTTGAAATCATTGGTTAATTTGAGACTCCTACAA ATCAATCATGCAAAAGTGAAAGGGAAGTTCAAAAGTTTTCCTGCTAGCCTGAAGTGGTTACAATGGAAAAATTGTCCTTTGAAAAAACTTCCTTCTGATT ATGCTCCTCATGAACTAGCAGTGCTAGATCTATCGGAGAGTGGAATTCAACGAGTTTGGGGTTGGACTAGGAACAAGGTGGCTGAGAACTTGATGGTTAT GAATCTTCGACGTTGCTATAATCTCGAGGCCAGTCCTGATTTATCTGGATGTAAAAAGTTGGAAAAGCTTGATTTTAAAGGCTGCATACAACTGACCAAG ATTCATGAATCACTGGGGAATGTAAGGACGTTACTTCAATTGAACTTGGATAAATGCATAAACCTTGTTGAATTTCCACGTGATGTCTCTGGGCTCAGAC TTCTTCAGAATCTCATTCTCTCCAGCTGCTTAAAATTAGAAGAATTGCCACAGGACATAGGCAGCATGAATTCCTTGAAAGAACTTGTTGTTGATGAAAC TGCTATATCTATGCTTCCCCAATCTCTTTACCGCCTTACAAAACTTGAGAAGCTTAGTTTGAATGATTGCAAATTCATAAAAAGGCTGCCAGAACGCTTG GGAAACCTGATTTCTCTGAAGGAACTCTCTCTCAATCATTCTGCAGTTGAAGAACTGCCAGATTCTATCGGATCTTTGTCAAACCTTGAGAAACTAAGCT TAATGCGGTGCCAGTCACTCACTACGATTCCTGAATCCATTAGAAATCTCCAGTCATTGATGGAAGTTTCAATTACTAGCAGTGCAATCAAGGAATTACC TGCTGCAATAGGTTCATTACCTTATTTAAAGACATTATTCGCTGGAGGGTGTCATTTTCTGAGCAAATTGCCTGATTCAATTGGAGGACTTGCTTCTATT AGCGAACTTGAGCTAGATGGGACATCAATATCAGAACTTCCAGAGCAAATTCGTGGTTTGAAAATGATTGAGAAGCTTTACTTGAGGAAGTGCACATCTC TTAGAGAATTGCCTGAAGCAATTGGGAACATACTGAATCTTACTACTATAAACTTGTTTGGTTGTAATATTACTGAGTTGCCTGAATCCTTTGGGAGGCT GGAAAACCTTGTGATGTTGAATTTGGATGAGTGTAAAAGGCTCCACAAGCTTCCAGTTTCAATAGGAAATTTGAAGTCTTTATGCCACTTGCTAATGGAG AAGACTGCTGTTACAGTATTACCTGAAAATTTTGGAAATCTCTCTAGCTTAATGATATTGAAAATGCAAAAAGATCCGCTTGAATATCTCAGAACACAAG AACAGTTGGTTGTCCTTCCAAATTCTTTCTCAAAACTCTCCTTGCTAGAAGAACTAAATGCTCGTGCTTGGAGAATATCTGGAAAACTTCCTGATGATTT TGAGAAACTGTCATCGTTAGACATCTTGGATCTGGGCCACAACAATTTCAGCAGCCTTCCATCCAGTTTATGTGGCCTTTCTCTTCTACGGAAGCTTCTC CTGCCTCATTGTGAAGAGCTGAAGTCTCTCCCTCCGCTTCCCCCAAGTTTAGAGGAATTGGATGTTTCCAACTGCTTTGGATTGGAAACAATATCAGATG TTTCAGGCTTGGAAAGGTTGACGTTGCTGAACATCACAAATTGCGAGAAAGTGGTGGACATTCCTGGCATCGGATGCTTGAAATTCCTAAAACGGTTATA CATGAGCAGTTGCAAGGCATGCTCCTTGACAGTGAAGAGAAGACTATCCAAGGTTTGCTTGAGGAATATTCGCAACTTAAGTATGCCTGGGAGTAAATTC CCAGATTGGTTTTCTCAAGAAAATGTAGTTCACTTTTCCGAGCAAAAAAATCGTGCAATCAAAGCTGTGATTGTAAGTGTTGTCGTCTCTCTGGACCGCG AGATACCAGAGGACTTGAGATATTCCCCACTTGTACCAGACATTCAGGCCATTGTACTTGATCAGAATATACCTATCTACAGCACCACATTATACTTACG GGGAATACCAAAGATTAATGAGGATCAAATTCACATATGTCGATATTCAAATATCCAACCTTTGGTTTCAATGTTGAAAGATGGCTGTAAGATACAGGTA AGAAAGCGAAATCCACCGGTGATTGAAGGGATTGAGCTGAAGAAGAGTGGAATTCTCCTGGTTTATGAGGACGACGATGATTATGATGGAAATGAAGAAT CGTTGGATGAAAGTCAACAATCTGTATCACAAAAGCTGGCCAATTTTTTCAATTCATATGAAGAAGATAACCAAGTTTGTTGA
AA sequence Show only first row Show all	>Potri.012G053200.1 pacid=42782884 polypeptide=Potri.012G053200.1.p locus=Potri.012G053200 ID=Potri.012G053200.1.v4.1 annot-version=v4.1 MSNGLIVSSSPAALRLHWDVFLSFRGEDTRDSFTKHLYDSLNKQEIRVFLDASGMIQGDEIAPTLMEAIQDSASSIIILSPRYANSHWCLEELARICELR RLILPVFYQVDPSNVRRQKGPFEQDFESHSKRFGDDKVVKWRAAMNKVGGISGFVFDTSGEDHLIRRLVNRVLQELRKTPVGIATYTVGLDSRLEKLKMR FTDDKSNRVQVLGLYGMGGIGKTTLATALFNKLVGHFESRCFISNIKDISQEDGGLVTLQNKLLGDLFPDRPPVNDINDGIAVIKELCHEKRVLVVLDDV DDVNQLNVLAGKRDWFGEGSRVIVTTRNRDVLVEHLVNEFYEVRELGSSEALKLFSYHALRRDNPTEEYLNISKEIVSLTGGLPLALEVFGSTLFNERGI KKWEDVLKKLREIRPGNLQDVLRISFDGLDDEEKCVFLDIACLFIKMRMKREEAIDILNGCGFRAETAITVLTVKCLIKIGGDYELWMHDQLRDMGRQIV RDENLLDPGMRSRLWDRGDIMTMLKHKKGTRHVQGLILDFEKKNYVRTQKISWVKALNPSSSLDYLIEKCKLFLQLRAEEGELILDTEALKSLVNLRLLQ INHAKVKGKFKSFPASLKWLQWKNCPLKKLPSDYAPHELAVLDLSESGIQRVWGWTRNKVAENLMVMNLRRCYNLEASPDLSGCKKLEKLDFKGCIQLTK IHESLGNVRTLLQLNLDKCINLVEFPRDVSGLRLLQNLILSSCLKLEELPQDIGSMNSLKELVVDETAISMLPQSLYRLTKLEKLSLNDCKFIKRLPERL GNLISLKELSLNHSAVEELPDSIGSLSNLEKLSLMRCQSLTTIPESIRNLQSLMEVSITSSAIKELPAAIGSLPYLKTLFAGGCHFLSKLPDSIGGLASI SELELDGTSISELPEQIRGLKMIEKLYLRKCTSLRELPEAIGNILNLTTINLFGCNITELPESFGRLENLVMLNLDECKRLHKLPVSIGNLKSLCHLLME KTAVTVLPENFGNLSSLMILKMQKDPLEYLRTQEQLVVLPNSFSKLSLLEELNARAWRISGKLPDDFEKLSSLDILDLGHNNFSSLPSSLCGLSLLRKLL LPHCEELKSLPPLPPSLEELDVSNCFGLETISDVSGLERLTLLNITNCEKVVDIPGIGCLKFLKRLYMSSCKACSLTVKRRLSKVCLRNIRNLSMPGSKF PDWFSQENVVHFSEQKNRAIKAVIVSVVVSLDREIPEDLRYSPLVPDIQAIVLDQNIPIYSTTLYLRGIPKINEDQIHICRYSNIQPLVSMLKDGCKIQV RKRNPPVIEGIELKKSGILLVYEDDDDYDGNEESLDESQQSVSQKLANFFNSYEEDNQVC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G27170			transmembrane receptors;ATP bi...		Potri.012G053200 [exp]	0	1
AT1G10650			SBP (S-ribonuclease binding pr...		Potri.010G042200 [exp]	2.82	0.9188
AT1G47128		RD21A, RD21	RESPONSIVE TO DEHYDRATION 21A,...		Potri.001G302100 [exp]	5.65	0.8997
AT2G32980			unknown protein		Potri.014G158000 [exp]	6.00	0.9250
AT1G63430			Leucine-rich repeat protein ki...		Potri.003G124800 [exp]	6.32	0.9241
AT1G29400		AML5	MEI2-like protein 5 (.1.2)		Potri.012G107900 [exp]	8.71	0.8972
AT2G03350			Protein of unknown function, D...		Potri.008G092500 [exp]	10.09	0.9196
AT3G29180			Protein of unknown function (D...		Potri.017G088000 [exp]	10.58	0.9058
AT3G56230			BTB/POZ domain-containing prot...		Potri.013G083800 [exp]	13.22	0.9154
AT1G28490		OSM1, ATSYP61, ...	syntaxin of plants 61 (.1.2)		Potri.011G059700 [exp]	18.33	0.8920	SYP61.2
AT1G19940		ATGH9B5	glycosyl hydrolase 9B5 (.1)		Potri.005G237700 [exp]	21.63	0.9030

Compare expression of checked genes

Potri.012G053200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.