Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68320 244 / 1e-79 MYB BW62C, BW62B, AtMYB62 myb domain protein 62 (.1) AT1G25340 243 / 3e-79 MYB ATMYB116 myb domain protein 116 (.1.2) AT2G47190 222 / 3e-71 MYB AtMYB2 myb domain protein 2 (.1) AT1G48000 216 / 3e-69 MYB ATMYB112 myb domain protein 112 (.1) AT5G49620 205 / 3e-64 MYB ATMYB78 myb domain protein 78 (.1.2) AT3G06490 202 / 7e-63 MYB BOS1, AtMYB108 BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1) AT3G27810 196 / 2e-61 MYB AtMYB3, ATMYB21 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) AT5G40350 194 / 3e-61 MYB ATMYB24 myb domain protein 24 (.1) AT3G01530 182 / 1e-56 MYB ATMYB57 myb domain protein 57 (.1) AT4G13480 167 / 5e-50 MYB ATMYB79 myb domain protein 79 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G046200 [exp] 525 / 0 AT1G25340 241 / 2e-78 myb domain protein 116 (.1.2) Potri.008G122100 [exp] 293 / 3e-98 AT1G68320 274 / 1e-91 myb domain protein 62 (.1) Potri.010G123000 [exp] 277 / 4e-92 AT1G68320 268 / 4e-89 myb domain protein 62 (.1) Potri.008G101400 [exp] 224 / 2e-71 AT3G06490 278 / 2e-92 BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1) Potri.010G149900 [exp] 222 / 9e-71 AT3G06490 281 / 9e-94 BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1) Potri.002G191800 [exp] 203 / 2e-63 AT5G49620 231 / 1e-74 myb domain protein 78 (.1.2) Potri.014G117000 [exp] 202 / 2e-63 AT5G49620 233 / 1e-75 myb domain protein 78 (.1.2) Potri.017G071500 [exp] 191 / 2e-60 AT3G27810 233 / 2e-78 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) Potri.001G346600 [exp] 189 / 3e-59 AT3G27810 242 / 1e-81 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041435 [exp] 250 / 4e-81 AT1G68320 262 / 2e-86 myb domain protein 62 (.1) Lus10034338 [exp] 246 / 9e-80 AT1G68320 262 / 2e-86 myb domain protein 62 (.1) Lus10009037 [exp] 228 / 9e-74 AT1G68320 231 / 1e-75 myb domain protein 62 (.1) Lus10037818 [exp] 224 / 3e-71 AT3G06490 273 / 4e-90 BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1) Lus10017096 [exp] 221 / 8e-71 AT3G06490 259 / 4e-86 BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1) Lus10022259 [exp] 201 / 4e-63 AT3G27810 243 / 3e-81 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) Lus10038062 [exp] 201 / 5e-63 AT2G47190 226 / 1e-73 myb domain protein 2 (.1) Lus10009996 [exp] 197 / 2e-61 AT2G47190 221 / 3e-71 myb domain protein 2 (.1) Lus10032129 [exp] 188 / 1e-58 AT5G40350 221 / 2e-73 myb domain protein 24 (.1) Lus10014557 [exp] 186 / 8e-58 AT5G40350 224 / 1e-74 myb domain protein 24 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.012G055600.1 pacid=42782907 polypeptide=Potri.012G055600.1.p locus=Potri.012G055600 ID=Potri.012G055600.1.v4.1 annot-version=v4.1 ATGAGAGTGGATATCATGTCGTCTTCAAAAAAGACCACGAGTTCTAAAGAAGATGATGCTGAGCTGAGGAGGGGGCCATGGACTCTTGAAGAAGACACTC TCCTTGTTCATTACATTGCTCGTCATGGAGAAGGCCGATGGAATTTGCTTGCTAAACGTGCAGGGTTGAGGAGAACCGGAAAGAGTTGCAGGTTGAGATG GCTAAACTATCTAAAACCAGATGTAAAGCGAGGAAACCTTACTCCACAAGAACAACTCTTGATTCTTGACCTCCATTCCAAGTGGGGCAATAGATGGTCC AAAATCGCACAACATTTGCCGGGAAGAACTGATAATGAAATCAAGAACTATTGGAGAACTAGAGTGCAGAAACAAGCAAGGCACCTTAGGATAGATGCCA ACAGCACAGCCTTCCAGGATATAATTAGGCGTTCTTGGATGCCAAGATTGCTTCAAAAGATAGGAGGATCATCAACTTCTTCATCAGCCATGACATGTCA AAGCCCAGCAGTTTCTCAGCTCATCCCCAATTATGCTCCTCAGCTTTCAGCATTCCCAACAGCACTACCTCCACCACAACAACAAGAAGCTCCTCTTGAT ATGAGTGTGATGATGCACTGTATGGAGCATCGTGAGCAAACCTCAGACTCGGAGCATGGGACAAGCTCATGCATTTCTTCTGCAGAATCAATGAATGTCT CACAAATGTCTCATTTATCAGAGTACCCTAAAAGTCCCTTTCAGGCCATGGGCAACAACGGCGACTACAGCACCTTGGTGAAGGATTGCTATTATGTGGA CAGCAATTTCTATGACATGGAAGCCATCAACCTTGCAACCATGTCGGTGCCTGGAGAACTTGGAATCTCAGCTGTCGATCGCCACATGGGAGATGGTGAT TGGGCTGGATACGATTTTGGAGACACCGTGTGGAACATGGATGAGTTATGGCAATTTAGGAACTTGCAAGGAAAGGAAATTTAA
AA sequence Show only first row Show all	>Potri.012G055600.1 pacid=42782907 polypeptide=Potri.012G055600.1.p locus=Potri.012G055600 ID=Potri.012G055600.1.v4.1 annot-version=v4.1 MRVDIMSSSKKTTSSKEDDAELRRGPWTLEEDTLLVHYIARHGEGRWNLLAKRAGLRRTGKSCRLRWLNYLKPDVKRGNLTPQEQLLILDLHSKWGNRWS KIAQHLPGRTDNEIKNYWRTRVQKQARHLRIDANSTAFQDIIRRSWMPRLLQKIGGSSTSSSAMTCQSPAVSQLIPNYAPQLSAFPTALPPPQQQEAPLD MSVMMHCMEHREQTSDSEHGTSSCISSAESMNVSQMSHLSEYPKSPFQAMGNNGDYSTLVKDCYYVDSNFYDMEAINLATMSVPGELGISAVDRHMGDGD WAGYDFGDTVWNMDELWQFRNLQGKEI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68320	MYB	BW62C, BW62B, A...	myb domain protein 62 (.1)		Potri.012G055600 [exp]	0	1
AT3G09830			Protein kinase superfamily pro...		Potri.008G036800 [exp]	1.41	0.9018
AT5G47070			Protein kinase superfamily pro...		Potri.003G085300 [exp]	3.46	0.8562
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.011G027700 [exp]	14.96	0.7873
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.011G027501 [exp]	18.22	0.8635
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.016G137900 [exp]	24.37	0.8179
AT2G23450			Protein kinase superfamily pro...		Potri.007G034500 [exp]	26.70	0.8158
AT1G75800			Pathogenesis-related thaumatin...		Potri.004G014574 [exp]	32.87	0.8070
AT3G17700		ATCNGC20, CNBT1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Potri.015G034000 [exp]	37.74	0.8187	ATCNGC19.5
AT2G42390			protein kinase C substrate, he...		Potri.019G092100 [exp]	42.42	0.7702
AT3G11080		AtRLP35	receptor like protein 35 (.1)		Potri.012G028101 [exp]	43.17	0.8358

Compare expression of checked genes

Potri.012G055600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.