Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19000 153 / 2e-44 MYB Homeodomain-like superfamily protein (.1.2) AT1G74840 151 / 2e-44 MYB Homeodomain-like superfamily protein (.1.2) AT3G16350 131 / 3e-35 MYB Homeodomain-like superfamily protein (.1) AT1G70000 127 / 7e-35 MYB myb-like transcription factor family protein (.1.2) AT5G47390 120 / 4e-31 MYB myb-like transcription factor family protein (.1) AT5G61620 103 / 3e-25 MYB myb-like transcription factor family protein (.1) AT2G38090 102 / 6e-25 MYB MYB-R Duplicated homeodomain-like superfamily protein (.1) AT5G58900 100 / 3e-24 MYB Homeodomain-like transcriptional regulator (.1) AT5G04760 96 / 2e-23 MYB Duplicated homeodomain-like superfamily protein (.1) AT5G56840 95 / 5e-23 MYB myb-like transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G069000 [exp] 305 / 4e-103 AT1G70000 132 / 8e-37 myb-like transcription factor family protein (.1.2) Potri.008G191800 [exp] 150 / 5e-43 AT1G70000 241 / 5e-79 myb-like transcription factor family protein (.1.2) Potri.010G039233 [exp] 143 / 3e-40 AT1G70000 230 / 7e-75 myb-like transcription factor family protein (.1.2) Potri.003G079500 [exp] 127 / 3e-34 AT5G47390 355 / 4e-122 myb-like transcription factor family protein (.1) Potri.001G189800 [exp] 122 / 7e-32 AT3G16350 307 / 2e-102 Homeodomain-like superfamily protein (.1) Potri.003G049100 [exp] 120 / 5e-31 AT3G16350 311 / 8e-104 Homeodomain-like superfamily protein (.1) Potri.001G155300 [exp] 119 / 7e-31 AT5G47390 340 / 7e-116 myb-like transcription factor family protein (.1) Potri.012G060300 [exp] 104 / 6e-26 AT1G49010 217 / 3e-69 Duplicated homeodomain-like superfamily protein (.1) Potri.006G230500 [exp] 101 / 4e-25 AT5G56840 167 / 1e-51 myb-like transcription factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036652 [exp] 150 / 2e-43 AT1G74840 176 / 4e-54 Homeodomain-like superfamily protein (.1.2) Lus10013289 [exp] 136 / 9e-38 AT1G70000 235 / 5e-77 myb-like transcription factor family protein (.1.2) Lus10010733 [exp] 132 / 2e-36 AT1G70000 182 / 1e-56 myb-like transcription factor family protein (.1.2) Lus10036678 [exp] 128 / 2e-35 AT1G70000 171 / 1e-52 myb-like transcription factor family protein (.1.2) Lus10030813 [exp] 129 / 3e-35 AT1G70000 229 / 7e-75 myb-like transcription factor family protein (.1.2) Lus10006826 [exp] 126 / 1e-33 AT3G16350 235 / 1e-74 Homeodomain-like superfamily protein (.1) Lus10037560 [exp] 126 / 2e-33 AT3G16350 303 / 8e-101 Homeodomain-like superfamily protein (.1) Lus10004384 [exp] 112 / 3e-28 AT5G47390 394 / 3e-137 myb-like transcription factor family protein (.1) Lus10040181 [exp] 112 / 3e-28 AT5G47390 398 / 1e-138 myb-like transcription factor family protein (.1) Lus10038279 [exp] 110 / 1e-27 AT3G16350 279 / 5e-91 Homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.012G073900.1 pacid=42783497 polypeptide=Potri.012G073900.1.p locus=Potri.012G073900 ID=Potri.012G073900.1.v4.1 annot-version=v4.1 ATGGTGGCCGGTAGTAGCTCCACAGGTAGCGGTGTTGAAGGAGCGGCAGAGACGAGGCCGAAGGAGATTTTGTTGTTTGGAGTCAGAGTGGTGGTTGATA ACATGAGGAAAATTGTGAGTTTGAATAATATGAATGATTATGAGCACTTGAATGATAACGAGGAAGATGAAGAAGCCGCTGCCGGTGCTTCTGCTTCTGC TGCTGTTTCTGGTTATATGTCTGCAGACGACACCGTTCAACACTCTTCTTCAGCCTCTGAAAGGCGTAGCCAGCGAAAGAGAGGATTGCCATGGACAGAG GAGGAGCACAAGAGATTCCTTGTAGGATTGCAGAAAATGGGCAAAGGAGACTGGAGAGGAATTTCTCGCAATTTTGTCAGGACCCGAACATCAACTCAGG TTGCTAGTCATGCTCAGAAGCATTTTCTCCGCAACAGTAACGTGAATCGCCGTCGCCGCCGATCTAGCCTCTTTGATATCACCACCGATATGGTGACGGA AACTCCAATGGAAGAGCAGCAAGCTCTTTGCCAAGACAGCAAGAGCAACAACCAGGCACCCAAGTCAAATCCACCGCTGCAAGCCAACAGTACCACCAGT TTCCCTGGGGTGCTGCCTTTCCCTATAAGAAGGAGAACTGTCAGTCCTGCCGTGTCGCCTCTCCAAATTGAGAGTCCAATAATGGAAAACCGGTCACTTG GACAAGGCAATCAATCCCTTAACTACTCAACAAATCTAGTCCTCACAGTCCCCGTCGTCCCAGCTCCTTGTACTTCAGTAATGCCTGATCTTAACTTAAA CTTGAAGCCGGTTGCTGATTCATCTCCGTTGTCACTCGATCTGTCTTCATCGTCTGATCAGAGGGCATCGTCATCTAGGCATTCAGCTTTCCAGACGATG TCAAGTTTGAAAAACGGTGATAACATCATCGTTGTTGCTTGA
AA sequence Show only first row Show all	>Potri.012G073900.1 pacid=42783497 polypeptide=Potri.012G073900.1.p locus=Potri.012G073900 ID=Potri.012G073900.1.v4.1 annot-version=v4.1 MVAGSSSTGSGVEGAAETRPKEILLFGVRVVVDNMRKIVSLNNMNDYEHLNDNEEDEEAAAGASASAAVSGYMSADDTVQHSSSASERRSQRKRGLPWTE EEHKRFLVGLQKMGKGDWRGISRNFVRTRTSTQVASHAQKHFLRNSNVNRRRRRSSLFDITTDMVTETPMEEQQALCQDSKSNNQAPKSNPPLQANSTTS FPGVLPFPIRRRTVSPAVSPLQIESPIMENRSLGQGNQSLNYSTNLVLTVPVVPAPCTSVMPDLNLNLKPVADSSPLSLDLSSSSDQRASSSRHSAFQTM SSLKNGDNIIVVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G74840	MYB		Homeodomain-like superfamily p...		Potri.012G073900 [exp]	0	1
AT5G39990			Core-2/I-branching beta-1,6-N-...		Potri.009G003300 [exp]	2.00	0.8646
AT3G52040			unknown protein		Potri.009G056800 [exp]	2.23	0.8704
AT1G08680		ZIGA4, AGD14	ARF-GAP domain 14, ARF GAP-lik...		Potri.013G068300 [exp]	11.22	0.8080	ZIGA4.1
AT5G10290			leucine-rich repeat transmembr...		Potri.005G074200 [exp]	11.66	0.8520
AT3G18370		NTMCTYPE3, ATSY...	C2 domain-containing protein (...		Potri.012G056000 [exp]	12.00	0.8509
AT3G56860		UBA2A	UBP1-associated protein 2A (.1...		Potri.001G220600 [exp]	13.30	0.8661
AT1G51940			protein kinase family protein ...		Potri.008G187500 [exp]	16.97	0.8401
AT1G55080		MED9	unknown protein		Potri.003G037200 [exp]	18.33	0.8540
AT1G73730	EIL	AtEIL3, ATSLIM,...	ARABIDOPSIS THALIANA SULFUR LI...		Potri.001G015900 [exp]	19.74	0.8543	Pt-EIL3.2
AT5G15080			Protein kinase superfamily pro...		Potri.010G033800 [exp]	19.74	0.8464

Compare expression of checked genes

Potri.012G073900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.