Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62890 914 / 0 Xanthine/uracil permease family protein (.1.2.3.4) AT5G49990 843 / 0 Xanthine/uracil permease family protein (.1) AT1G60030 823 / 0 ATNAT7 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) AT1G10540 756 / 0 ATNAT8 nucleobase-ascorbate transporter 8 (.1) AT1G49960 617 / 0 Xanthine/uracil permease family protein (.1) AT2G34190 606 / 0 Xanthine/uracil permease family protein (.1) AT1G65550 587 / 0 Xanthine/uracil permease family protein (.1) AT2G05760 566 / 0 Xanthine/uracil permease family protein (.1) AT2G26510 489 / 7e-169 PDE135 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2) AT5G25420 407 / 8e-139 Xanthine/uracil/vitamin C permease (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G072600 [exp] 963 / 0 AT5G62890 908 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Potri.008G146400 [exp] 853 / 0 AT1G60030 881 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) Potri.010G095500 [exp] 843 / 0 AT1G60030 869 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) Potri.009G086800 [exp] 674 / 0 AT1G49960 727 / 0.0 Xanthine/uracil permease family protein (.1) Potri.004G058800 [exp] 602 / 0 AT2G34190 927 / 0.0 Xanthine/uracil permease family protein (.1) Potri.011G068200 [exp] 600 / 0 AT2G34190 928 / 0.0 Xanthine/uracil permease family protein (.1) Potri.014G157800 [exp] 586 / 0 AT2G05760 930 / 0.0 Xanthine/uracil permease family protein (.1) Potri.014G015100 [exp] 571 / 0 AT1G65550 559 / 0.0 Xanthine/uracil permease family protein (.1) Potri.002G129400 [exp] 515 / 5e-179 AT2G26510 751 / 0.0 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004228 [exp] 948 / 0 AT5G62890 972 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10034125 [exp] 934 / 0 AT1G49960 944 / 0.0 Xanthine/uracil permease family protein (.1) Lus10042138 [exp] 916 / 0 AT5G62890 932 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10043460 [exp] 887 / 0 AT5G62890 892 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10010707 [exp] 858 / 0 AT5G62890 916 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10029191 [exp] 854 / 0 AT5G62890 914 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10033773 [exp] 602 / 0 AT1G49960 695 / 0.0 Xanthine/uracil permease family protein (.1) Lus10036355 [exp] 599 / 0 AT1G65550 748 / 0.0 Xanthine/uracil permease family protein (.1) Lus10029238 [exp] 595 / 0 AT2G34190 926 / 0.0 Xanthine/uracil permease family protein (.1) Lus10014777 [exp] 593 / 0 AT1G65550 751 / 0.0 Xanthine/uracil permease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF00860 [poplar] [flax] Xan_ur_permease Permease family
Representative CDS sequence Show only first row Show all	>Potri.012G077400.11 pacid=42782984 polypeptide=Potri.012G077400.11.p locus=Potri.012G077400 ID=Potri.012G077400.11.v4.1 annot-version=v4.1 ATGGCTGGAGGAGGAGGAAAGGCTGAGGAGCCACAACCACATCCACCAAAGGAGCAGCTTCCCAACATTTATTATTGCATTACGAGTCCACCTCCATGGC CGGAAGCTATCCTACTTGGTTTCCAACATTACCTTGTGATGCTTGGAACTACTGTTCTCATCCCTTCTGCTCTCGTTCCCCAGATGGGAGGAGGAAATAA AGAGAAGGCGGAGGTGATCCAGACACTTCTCTTTGTTGCTGGTCTGAACACGTTGCTCCAGAGTTTGTTTGGCACTCGTTTGCCTGCTGTTATTGGAGGC TCTTACACCTTTGTCCCAACCACAATTTCAATTATCCTTGCTGGTCGATTTAGTGATGAACCAGATCCTGTTGAGAAATTTAAGAGGATTATGCGTGCAA CACAAGGTGCTCTCATTGTTGCTTCAACTCTCCAGATTGTTCTAGGCTTCAGTGGCCTTTGGCGTAATGTCACCAGGTTTTTAAGTCCACTGTCAGCTGT TCCTTTGGTAGCCCTTGTTGGTTTTGGGCTGTATGAGCTTGGGTTTCCTGGGGTCGCCAAATGCGTGGAGATTGGCCTTCCAGAGCTTATCATTTTAGTA TTTATTTCACAGTACATGCCCCATTTGATAAAGTCAGGAAGACATGTCTTTGATCGTTTTGCTGTCATATTCGCGGTGGTGATTGTATGGATTTATGCTC ATCTGCTCACAGTGGGTGGTGCTTATAATGATGCACCACCAAGGACACAAGTAACTTGCCGTACTGACCGTGCTGGACTTATAGATGGTTCTCCATGGAT AAGAGTTCCATATCCCTTTCAATGGGGAGCACCTTCATTTGATGCTGGTGAAGCTTTTGCCATGATGATGGCTTCCTTTGTTGCTCTTGTAGAGTCCACT GGCGCATTTATTGCTGTATCAAGGTATGCAAGTGCAACTCCTATGCCACCTTCTGTTCTTAGCCGTGGTGTTGGCTGGCAGGGAGTCGCCATTTTGCTTT CTGGGCTGTTTGGAACTGGAAATGGATCTTCTGTATCCGTAGAGAATGCTGGTCTCTTGGCCTTAACACGAGTTGGCAGCCGAAGGGTTGTCCAGATATC TGCAGGATTCATGATTTTCTTCTCTGTTCTTGGAAAATTTGGGGCAGTCTTTGCTTCAATTCCATCACCCATTATTGCCGGTTTATATTGCCTTTTCTTT GCCTACGTGGGTGCTGGTGGTCTTAGCTTTCTTCAGTTCTGTAATCTCAACAGCTTCCGAACAAAGTTCATACTAGGCTTCTCTATTTTCATGGGGTTAT CAGTGCCACAGTACTTTAATGAGTACACTGCAATTAAGGGCTTTGGTCCAGTCAACACAAGTGGAAGATGGTTCAACGATATTATAAACGTTCCTTTCTC ATCAGAAGCATTTGTGGCGGGCTGCGTGGCCTATTTCCTGGACAACACGATACATAAAAAAGATAGTTCAATAAGGAAAGACAGGGGTAAGCACTGGTGG GCCAAATTCAAATCATTCAAGGGTGATACAAGGAGCGAGGAATTCTATTCCCTGCCCTTTAATCTAAACAAATATTTTCCGTCCGTGTAA
AA sequence Show only first row Show all	>Potri.012G077400.11 pacid=42782984 polypeptide=Potri.012G077400.11.p locus=Potri.012G077400 ID=Potri.012G077400.11.v4.1 annot-version=v4.1 MAGGGGKAEEPQPHPPKEQLPNIYYCITSPPPWPEAILLGFQHYLVMLGTTVLIPSALVPQMGGGNKEKAEVIQTLLFVAGLNTLLQSLFGTRLPAVIGG SYTFVPTTISIILAGRFSDEPDPVEKFKRIMRATQGALIVASTLQIVLGFSGLWRNVTRFLSPLSAVPLVALVGFGLYELGFPGVAKCVEIGLPELIILV FISQYMPHLIKSGRHVFDRFAVIFAVVIVWIYAHLLTVGGAYNDAPPRTQVTCRTDRAGLIDGSPWIRVPYPFQWGAPSFDAGEAFAMMMASFVALVEST GAFIAVSRYASATPMPPSVLSRGVGWQGVAILLSGLFGTGNGSSVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPSPIIAGLYCLFF AYVGAGGLSFLQFCNLNSFRTKFILGFSIFMGLSVPQYFNEYTAIKGFGPVNTSGRWFNDIINVPFSSEAFVAGCVAYFLDNTIHKKDSSIRKDRGKHWW AKFKSFKGDTRSEEFYSLPFNLNKYFPSV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G62890			Xanthine/uracil permease famil...		Potri.012G077400 [exp]	0	1
AT1G02000		GAE2	UDP-D-glucuronate 4-epimerase ...		Potri.012G128200 [exp]	2.00	0.8639
AT1G20330		FRL1, CVP1, SMT...	FRILL1, COTYLEDON VASCULAR PAT...		Potri.005G245800 [exp]	2.23	0.8748	SMT1.2
AT3G07990		SCPL27	serine carboxypeptidase-like 2...		Potri.010G220100 [exp]	3.87	0.8291
AT1G13250		GATL3	galacturonosyltransferase-like...		Potri.010G129400 [exp]	5.19	0.8637
AT1G31850			S-adenosyl-L-methionine-depend...		Potri.003G102400 [exp]	6.70	0.8429
AT5G58300			Leucine-rich repeat protein ki...		Potri.019G131500 [exp]	13.11	0.8089
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Potri.009G093900 [exp]	14.07	0.8486
AT1G11680		EMB1738, CYP51A...	embryo defective 1738, CYTOCHR...		Potri.003G161700 [exp]	15.09	0.8608	CYP51G5,CYP51.1
AT1G05170			Galactosyltransferase family p...		Potri.011G004200 [exp]	22.69	0.7756
AT1G53730		SRF6	STRUBBELIG-receptor family 6 (...		Potri.001G161600 [exp]	23.55	0.8111

Compare expression of checked genes

Potri.012G077400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.