Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G33320 458 / 9e-161 ARAPPT, CUE1 PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR, CAB UNDEREXPRESSED 1, ARABIDOPSIS THALIANA PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR, Glucose-6-phosphate/phosphate translocator-related (.1) AT3G01550 331 / 6e-111 ATPPT2 phosphoenolpyruvate (pep)/phosphate translocator 2 (.1) AT5G17630 194 / 2e-57 Nucleotide/sugar transporter family protein (.1) AT1G61800 179 / 3e-52 ATGPT2, GPT2 ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, glucose-6-phosphate/phosphate translocator 2 (.1) AT5G46110 171 / 5e-50 TPT, APE2 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) AT5G54800 173 / 8e-50 ATGPT1, GPT1 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) AT4G03950 81 / 6e-17 Nucleotide/sugar transporter family protein (.1) AT5G05820 64 / 6e-11 Nucleotide-sugar transporter family protein (.1) AT3G11320 63 / 1e-10 Nucleotide-sugar transporter family protein (.1) AT1G12500 59 / 2e-09 Nucleotide-sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G077900 [exp] 571 / 0 AT5G33320 517 / 0.0 PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR, CAB UNDEREXPRESSED 1, ARABIDOPSIS THALIANA PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR, Glucose-6-phosphate/phosphate translocator-related (.1) Potri.001G347300 [exp] 382 / 7e-131 AT3G01550 411 / 1e-142 phosphoenolpyruvate (pep)/phosphate translocator 2 (.1) Potri.013G071900 [exp] 188 / 5e-55 AT5G17630 526 / 0.0 Nucleotide/sugar transporter family protein (.1) Potri.004G048900 [exp] 171 / 5e-50 AT5G46110 539 / 0.0 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Potri.001G420200 [exp] 173 / 7e-50 AT5G54800 563 / 0.0 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) Potri.004G019900 [exp] 173 / 1e-49 AT1G61800 592 / 0.0 ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, glucose-6-phosphate/phosphate translocator 2 (.1) Potri.011G135900 [exp] 172 / 3e-49 AT5G54800 583 / 0.0 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) Potri.008G095200 [exp] 168 / 9e-48 AT5G46110 454 / 5e-159 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Potri.011G057800 [exp] 167 / 1e-47 AT5G46110 627 / 0.0 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042110 [exp] 487 / 5e-172 AT5G33320 528 / 0.0 PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR, CAB UNDEREXPRESSED 1, ARABIDOPSIS THALIANA PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR, Glucose-6-phosphate/phosphate translocator-related (.1) Lus10002385 [exp] 446 / 1e-155 AT5G33320 485 / 2e-171 PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR, CAB UNDEREXPRESSED 1, ARABIDOPSIS THALIANA PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR, Glucose-6-phosphate/phosphate translocator-related (.1) Lus10013083 [exp] 371 / 2e-126 AT3G01550 429 / 1e-149 phosphoenolpyruvate (pep)/phosphate translocator 2 (.1) Lus10022257 [exp] 244 / 2e-78 AT3G01550 264 / 1e-87 phosphoenolpyruvate (pep)/phosphate translocator 2 (.1) Lus10019209 [exp] 185 / 3e-54 AT5G17630 480 / 2e-169 Nucleotide/sugar transporter family protein (.1) Lus10004312 [exp] 184 / 5e-54 AT5G17630 484 / 4e-171 Nucleotide/sugar transporter family protein (.1) Lus10013978 [exp] 176 / 1e-50 AT5G46110 641 / 0.0 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Lus10043060 [exp] 176 / 2e-50 AT5G54800 580 / 0.0 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) Lus10015399 [exp] 173 / 1e-49 AT5G46110 642 / 0.0 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Lus10011155 [exp] 172 / 1e-49 AT5G54800 581 / 0.0 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF03151 [poplar] [flax] TPT Triose-phosphate Transporter family
Representative CDS sequence Show only first row Show all	>Potri.012G082100.1 pacid=42784040 polypeptide=Potri.012G082100.1.p locus=Potri.012G082100 ID=Potri.012G082100.1.v4.1 annot-version=v4.1 ATGCAGAGCACAGCCTTCACTCCTTCTTCTTCCTCATCTCTTTCCCCCCTCAAACCACGACGCCTAGTTGCTAACCCTATTTATTCACTCCCTTCCAGAT TCGATCCGATTCGCGCTTTCTCTTCTTCTTCTTCGAAGCGACACGACCCCGACTCCAACAATGTCGTTTTCCCTCGCCGATCATGGTCCTTGTCTTCAGC TTCCAACTCCTCTCTTTCGCGGCCGTGGAATCCCTTGGTCTCTGAGCGTAAAATGGAGCGTTTTGAGGTGAAAGCAACGGCGGTTCCAGAGAGTGCTGGT GAGGGAAAAGAGAAGAGTAGTTTGACCAAGACTTTAGAGCTTGGTTTATTGTTTGGCCTTTGGTATCTTTTCAATATCTACTTCAATATTTATAACAAGC AGGTTTTGAGGGTATTCCCGAACCCAGTAACTATCACTGCAGCTCAGTTTACTGTTGGGACGGTATTGGTAGCTTGTATGTGGACTTTCAATCTGTATAA AAAGCCGAAAGTTAGTGGCGCGCAGCTTGCTGCAATTCTGCCATTGGCGGTGGTTCACACGCTAGGGAACCTTTTCACTAATATGAGTCTTGGGAAGGTT GCTGTTTCATTCACGCACACTATCAAGGCTATGGAGCCATTCTTCTCGGTTGTCCTCTCTGCTATGTTTCTCGGGGAGATGCCTACACTTTGGGTGGTTG GTTCCATTATACCAATTGTTGGTGGAGTGGCACTTGCCTCAGTCACTGAGGCCTCTTTCAATTGGGCTGGTTTTTGGAGTGCAATGGCTTCTAATTTGAC AAACCAATCTCGTAATGTCCTAAGTAAAAAGGTCATGCTTAAGAAAGAGGAATCTATGGACAACATTACTCTTTTCTCCATCATAACAATCATGTCATTT ATCTTATTAGCCCCTGTGACTATCTTCATGGAAGGTGTCAAGTTTACTCCAGCTTACCTCCAATCTGTTGGATTGAATGTTAAAGAGGTATACACTAGGG CTTTTCTTGCTGCGCTTTGCTTCCATGCCTATCAACAGGTTTCCTATATGATTTTGCAAAGGGTATCCCCTGTTACACACTCTGTTGGTAATTGCGTGAA GCGGGTGGTTGTCATTGTGAGCTCTGTCCTCTTCTTCAAGACACCTGTGTCACCTATCAACTCACTTGGTACCGGGATTGCCCTTGCCGGAGTTTTTCTG TATTCAAGAGTGAAGAGCATTAAGCCAAAGCCAAAGACAGCTTGA
AA sequence Show only first row Show all	>Potri.012G082100.1 pacid=42784040 polypeptide=Potri.012G082100.1.p locus=Potri.012G082100 ID=Potri.012G082100.1.v4.1 annot-version=v4.1 MQSTAFTPSSSSSLSPLKPRRLVANPIYSLPSRFDPIRAFSSSSSKRHDPDSNNVVFPRRSWSLSSASNSSLSRPWNPLVSERKMERFEVKATAVPESAG EGKEKSSLTKTLELGLLFGLWYLFNIYFNIYNKQVLRVFPNPVTITAAQFTVGTVLVACMWTFNLYKKPKVSGAQLAAILPLAVVHTLGNLFTNMSLGKV AVSFTHTIKAMEPFFSVVLSAMFLGEMPTLWVVGSIIPIVGGVALASVTEASFNWAGFWSAMASNLTNQSRNVLSKKVMLKKEESMDNITLFSIITIMSF ILLAPVTIFMEGVKFTPAYLQSVGLNVKEVYTRAFLAALCFHAYQQVSYMILQRVSPVTHSVGNCVKRVVVIVSSVLFFKTPVSPINSLGTGIALAGVFL YSRVKSIKPKPKTA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G33320		ARAPPT, CUE1	PHOSPHOENOLPYRUVATE/PHOSPHATE ...		Potri.012G082100 [exp]	0	1
AT2G32580			Protein of unknown function (D...		Potri.002G227100 [exp]	1.41	0.7028
AT3G08590		iPGAM2	2,3-biphosphoglycerate-indepen...		Potri.006G113300 [exp]	5.00	0.6487
					Potri.001G132850 [exp]	6.16	0.6918
AT1G02100		SBI1	SUPPRESSOR OF BRI1, Leucine ca...		Potri.014G047300 [exp]	9.38	0.6059
AT3G03960			TCP-1/cpn60 chaperonin family ...		Potri.019G034200 [exp]	12.80	0.6585
AT3G62830		ATUXS2, UXS2, A...	UDP-GLUCURONIC ACID DECARBOXYL...		Potri.014G129200 [exp]	18.16	0.6239	UXS2.2
					Potri.001G100550 [exp]	22.97	0.6733
AT4G22130		SRF8	STRUBBELIG-receptor family 8 (...		Potri.004G005301 [exp]	26.83	0.6350
AT1G80170			Pectin lyase-like superfamily ...		Potri.001G171900 [exp]	29.54	0.6258
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Potri.005G033800 [exp]	30.98	0.5108

Compare expression of checked genes

Potri.012G082100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.