Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50150 593 / 0 Protein of Unknown Function (DUF239) (.1) AT1G10750 548 / 0 Protein of Unknown Function (DUF239) (.1) AT1G70550 545 / 0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT1G23340 528 / 0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT5G18460 437 / 1e-151 Protein of Unknown Function (DUF239) (.1) AT1G55360 425 / 3e-147 Protein of Unknown Function (DUF239) (.1) AT3G13510 423 / 2e-146 Protein of Unknown Function (DUF239) (.1) AT5G56530 417 / 5e-144 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT2G44210 385 / 2e-131 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT2G44220 350 / 7e-118 Protein of Unknown Function (DUF239) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G080300 [exp] 746 / 0 AT5G50150 637 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.008G188000 [exp] 604 / 0 AT1G70550 661 / 0.0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) Potri.010G044300 [exp] 601 / 0 AT1G70550 664 / 0.0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) Potri.013G050100 [exp] 446 / 2e-155 AT5G18460 635 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.019G024100 [exp] 446 / 5e-155 AT5G18460 622 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.003G221200 [exp] 428 / 3e-148 AT1G55360 716 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.001G233000 [exp] 422 / 1e-145 AT3G13510 621 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.001G003800 [exp] 417 / 3e-144 AT1G55360 689 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.006G233700 [exp] 223 / 4e-69 AT5G25950 333 / 1e-111 Protein of Unknown Function (DUF239) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013046 [exp] 568 / 0 AT1G10750 642 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10029116 [exp] 565 / 0 AT1G10750 642 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10001248 [exp] 560 / 0 AT5G50150 580 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10039949 [exp] 555 / 0 AT5G50150 575 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10027683 [exp] 555 / 0 AT5G50150 575 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10042092 [exp] 530 / 0 AT5G50150 540 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10004766 [exp] 435 / 2e-150 AT5G18460 603 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10013410 [exp] 423 / 2e-146 AT3G13510 708 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10003100 [exp] 421 / 1e-144 AT5G18460 593 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10010315 [exp] 351 / 1e-118 AT3G13510 626 / 0.0 Protein of Unknown Function (DUF239) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03080 [poplar] [flax] Neprosin Neprosin PF14365 [poplar] [flax] Neprosin_AP Neprosin activation peptide
Representative CDS sequence Show only first row Show all	>Potri.012G088300.3 pacid=42782571 polypeptide=Potri.012G088300.3.p locus=Potri.012G088300 ID=Potri.012G088300.3.v4.1 annot-version=v4.1 ATGGCTGCTTCTACTTCTGTTGACACTCACTCGATGATACCTATTTTTGTTGCTTTCCTTCTTGTTTTTGCTTCTTCTATTTATCCTGTCTTGTCTGTAC CAGCTGCTGAGTCAGATTCCGGTAACCGGCTATTAGCCAACCAAACTTTCAGGCCGGGTAAAGAAATATTGAGACTAAAGAGAGTCAATGCTTTTCTCAA CAAGATCAACAAGTCTGCAGTCAAGACAATTCAGAGCCCTGATGGTGATGTAATAGACTGTGTTCTATCTCATCTTCAACCAGCATTTGACCATCCAGAG CTTAGAGGAAAGAAACCCCTGGATCCACCAGAGAGGCCGAAAGGCAATGAAACAAGAGAGACAGAGACAGTGGCTGAGAGCTATCAGCTCTGGACAGATT CGGGTGAATCATGCCCAGAAGGAACTGTTCCAATAAGAAGAACCACAGTAAAAGATGTTTTAAGAGTAGGTTCTGTTAAAAGATTTGTCAGAAAATTAAG ACGACATGTAAGAAGAGACTCAGAAGGCAGTGGTCATGAGCATGCAGTTGTTTTTGCTAACGGAGACCAGTATTTTGGAGCGAAGGCAAGCATAAATGTC TGGTCACCTCGTGTAACCAGTGAATATGAATTCAGCTTATCACAAATCTGGGTCATCTCTGGCTCTTTCGGCAATGATCTTAATACCATAGAAGCCGGTT GGCAGGTTAGTCCAGATTTATATGGAGATAATTACCCTAGATTCTTCACTTATTGGACAACCGATGCATACCAAGCTACTGGATGCTATAACTTGCTATG TTCTGGATTTGTCCAAACAAACAACAAGATTGCCATTGGAGCTGCGATATCTCCAAGATCATCTTACAATGGCAGACAATTTGATATTGGCTTGATGATT TGGAAGGACCCAAAGCATGGAAATTGGTGGCTGGAATTTGGATCAGGACTCCTGGTAGGATATTGGCCAGCGTTTTTGTTCAGCCACTTGAGAAGTCATG CAAGCATGGTACAATTTGGAGGGGAAATTGTGAACTTCAGATCAGCAGGGTTCCATACATCAACACAGATGGGCAGTGGTCATTTTGCAGAAGAGGGATT TGGAAAAGCATCCTATTTTAGGAATTTGCAGGTGGTGGATTGGGATAACAATTTGCTCCCTCTAGCAAATCTACATCTCTTGGCTGATCATTCAAATTGT TATAATATAAAGCAAGGGAGAAACAGTGTTTGGGGGACTTACTTTTACTATGGAGGTCCTGGAAGGAATGTAAGGTGTCCATGA
AA sequence Show only first row Show all	>Potri.012G088300.3 pacid=42782571 polypeptide=Potri.012G088300.3.p locus=Potri.012G088300 ID=Potri.012G088300.3.v4.1 annot-version=v4.1 MAASTSVDTHSMIPIFVAFLLVFASSIYPVLSVPAAESDSGNRLLANQTFRPGKEILRLKRVNAFLNKINKSAVKTIQSPDGDVIDCVLSHLQPAFDHPE LRGKKPLDPPERPKGNETRETETVAESYQLWTDSGESCPEGTVPIRRTTVKDVLRVGSVKRFVRKLRRHVRRDSEGSGHEHAVVFANGDQYFGAKASINV WSPRVTSEYEFSLSQIWVISGSFGNDLNTIEAGWQVSPDLYGDNYPRFFTYWTTDAYQATGCYNLLCSGFVQTNNKIAIGAAISPRSSYNGRQFDIGLMI WKDPKHGNWWLEFGSGLLVGYWPAFLFSHLRSHASMVQFGGEIVNFRSAGFHTSTQMGSGHFAEEGFGKASYFRNLQVVDWDNNLLPLANLHLLADHSNC YNIKQGRNSVWGTYFYYGGPGRNVRCP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G50150			Protein of Unknown Function (D...		Potri.012G088300 [exp]	0	1
AT5G48800			Phototropic-responsive NPH3 fa...		Potri.002G242300 [exp]	1.00	0.8646
AT3G30380			alpha/beta-Hydrolases superfam...		Potri.008G112600 [exp]	2.82	0.8001
AT2G34680		AIR9	AUXIN-INDUCED IN ROOT CULTURES...		Potri.001G357700 [exp]	3.00	0.7923
AT5G17410			Spc97 / Spc98 family of spindl...		Potri.010G180700 [exp]	6.48	0.7467
AT2G05920			Subtilase family protein (.1)		Potri.006G141200 [exp]	11.18	0.7633
AT5G43700	AUX_IAA	IAA4, ATAUX2-11	indole-3-acetic acid inducible...		Potri.013G041300 [exp]	11.22	0.7258	IAA8.2
AT1G71830		ATSERK1, SERK1	somatic embryogenesis receptor...		Potri.005G083300 [exp]	11.83	0.7389
AT2G25810		TIP4;1	tonoplast intrinsic protein 4;...		Potri.006G239700 [exp]	14.69	0.6687	TIP4.1
AT5G45030			Trypsin family protein (.1.2)		Potri.011G143200 [exp]	15.42	0.7172
AT4G34660			SH3 domain-containing protein ...		Potri.001G128800 [exp]	16.09	0.6850

Compare expression of checked genes

Potri.012G088300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.