Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66350 257 / 2e-79 GRAS RGL1 RGA-like 1 (.1) AT5G17490 255 / 2e-78 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT3G03450 254 / 6e-78 GRAS RGL2 RGA-like 2 (.1) AT1G14920 252 / 2e-77 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT2G01570 250 / 6e-76 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT1G21450 239 / 1e-71 GRAS SCL1 SCARECROW-like 1 (.1) AT5G48150 222 / 2e-66 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT1G50420 210 / 7e-62 GRAS SCL-3, SCL3 scarecrow-like 3 (.1) AT2G04890 208 / 8e-62 GRAS SCL21 SCARECROW-like 21 (.1) AT3G54220 206 / 4e-59 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G091200 [exp] 860 / 0 AT1G66350 256 / 4e-79 RGA-like 1 (.1) Potri.005G095100 [exp] 325 / 3e-105 AT1G66350 252 / 3e-77 RGA-like 1 (.1) Potri.001G326000 [exp] 293 / 1e-91 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.010G110700 [exp] 264 / 4e-81 AT2G01570 764 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.008G131700 [exp] 259 / 5e-79 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.017G125200 [exp] 256 / 7e-78 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.004G089800 [exp] 248 / 8e-75 AT2G01570 709 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.001G361700 [exp] 229 / 2e-68 AT1G50600 637 / 0.0 scarecrow-like 5 (.1) Potri.002G073400 [exp] 226 / 5e-67 AT1G21450 707 / 0.0 SCARECROW-like 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017930 [exp] 668 / 0 AT1G66350 241 / 2e-73 RGA-like 1 (.1) Lus10037055 [exp] 606 / 0 AT1G66350 258 / 5e-80 RGA-like 1 (.1) Lus10036932 [exp] 604 / 0 AT1G66350 258 / 1e-79 RGA-like 1 (.1) Lus10014786 [exp] 522 / 0 AT2G01570 186 / 7e-53 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10031172 [exp] 313 / 5e-100 AT3G03450 257 / 5e-78 RGA-like 2 (.1) Lus10041540 [exp] 309 / 3e-97 AT1G66350 317 / 2e-100 RGA-like 1 (.1) Lus10031748 [exp] 306 / 8e-97 AT3G03450 248 / 2e-74 RGA-like 2 (.1) Lus10012554 [exp] 307 / 1e-95 AT1G66350 318 / 1e-99 RGA-like 1 (.1) Lus10033583 [exp] 252 / 1e-76 AT2G01570 681 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10017626 [exp] 252 / 1e-76 AT2G01570 679 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03514 [poplar] [flax] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Potri.012G093900.1 pacid=42783222 polypeptide=Potri.012G093900.1.p locus=Potri.012G093900 ID=Potri.012G093900.1.v4.1 annot-version=v4.1 ATGGCTCATAGTTTCTTGTCAAGGGAGTTCAATGATGAAACCTTAAGTGAAACGAGTGGTCTTGATCTCAGTCTTGCAGCTATGGCTTGCTATCCGCACC CTTATTTGCCCATATTTGAGAGCAATGTTGTTTCCAGGATGCTTCCTTTTTCGGATGAAACCAGAGATGTTAAGAGGATCAAACAGTCCTCAAGCATGGT TGAATCCATAAGAAGTAATGGTAGCAGTCTTTATAGTGGTGGAAGCAGTATTTGCCGCAGTAGTAGCACTAATAGCTTGAATAACATTCCAAAACTTCAT TTCAGAGATCATATATGGACTTACACGCAAAGATATCTTGCAGCTGAGGCTGTTGAAGAGGCAGCAGCAGCCATGATCAATGCCGAGGAAGGTGGAAATG AAGAAGAAGGGAATTCTGATGGAATGAGGTTGGTTCAGCTTCTAATTGCTTGCGCTGAAGCCGTGGCTTGTCGTGACAAGTCACATGCCTCGGCCTTATT ATCTGAGCTCCGATCTAATGCTTTGGTCTTTGGCTCTGCTTTCCAACGCGTGGCATCTTGCTTCGTGCAAGGACTGATCGACAGGCTCTCTCTGGTTCAA CCACTAGGGGCGGTTGGTTTTGTTGCACCCACGATGAACATAATAGACATTGCCTCAGACAAGAAGGAAGAAGCTTTACGCCTTGTTTACGAAATTTGCC CACATATTCGGTTTGGTCACTTTGTTGCCAATAATTCTATTTTGGAAGCCTTTGAGGGAGAGAGTTCAGTTCATGTGGTGGACCTAGGAATGACACTTGG ATTACCACACGGTCACCAATGGCGCCTGCTTATCCAAAGCCTCGCCGAACGAGCTGGAAAGCCACCTAGTCGCCTTCGAATAACTGGTGTTGGCCTTTGC GTTGACAGATTCCGAATCATCGGTGATGAACTCGAGGAATATGCAAAAGATATGGGAATTAATCTGGAGTTCTCAGTGGTGAAAAGCAGCCTGGAAAACT TGAGGCCTGAAGACATCAAAACCAGTGAAGATGAAGTTCTTGTTGTCAACAGCATTCTTCAACTCCATTGCGTGGTTAAGGAAAGTAGGGGAGCTCTGAA TTCTGTCTTGCAGATTATTCTTGAGCTCTCACCAAAGGTTCTTGTTCTAGTTGAACAAGATTCAAGCCACAATGGTCCATTCTTTCTAGGAAGATTCATG GAGGCACTGCATTACTATTCCGCAATCTTTGACTCCTTGGATACCATGCTGCCCAAATACGACACTAGGCGTGCCAAGATGGAGCAGTTTTACTTCGCAG AAGAGATAAAGAACATTGTGAGCTGTGAGGGGCCGGCAAGAGTTGAACGGCATGAGAGGGTGGATCAGTGGCGCAGGAGGATGAGCCGTGCAGGATTTCA GGTTGCCCCCATTAAGATGATGGCCCAGGCTAAGCAATGGCTGGTGCAGAGTAAGGTTTGTGACGGTTACACAGTTGTTGAAGAGAAGGGGTGCTTGGTG CTTGGCTGGAAATCAAAGCCTATAATTGCAGCTTCTTGCTGGAAATGCTAA
AA sequence Show only first row Show all	>Potri.012G093900.1 pacid=42783222 polypeptide=Potri.012G093900.1.p locus=Potri.012G093900 ID=Potri.012G093900.1.v4.1 annot-version=v4.1 MAHSFLSREFNDETLSETSGLDLSLAAMACYPHPYLPIFESNVVSRMLPFSDETRDVKRIKQSSSMVESIRSNGSSLYSGGSSICRSSSTNSLNNIPKLH FRDHIWTYTQRYLAAEAVEEAAAAMINAEEGGNEEEGNSDGMRLVQLLIACAEAVACRDKSHASALLSELRSNALVFGSAFQRVASCFVQGLIDRLSLVQ PLGAVGFVAPTMNIIDIASDKKEEALRLVYEICPHIRFGHFVANNSILEAFEGESSVHVVDLGMTLGLPHGHQWRLLIQSLAERAGKPPSRLRITGVGLC VDRFRIIGDELEEYAKDMGINLEFSVVKSSLENLRPEDIKTSEDEVLVVNSILQLHCVVKESRGALNSVLQIILELSPKVLVLVEQDSSHNGPFFLGRFM EALHYYSAIFDSLDTMLPKYDTRRAKMEQFYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQVAPIKMMAQAKQWLVQSKVCDGYTVVEEKGCLV LGWKSKPIIAASCWKC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Potri.012G093900 [exp]	0	1
AT5G24090		ATCHIA	chitinase A (.1)		Potri.002G242000 [exp]	15.84	0.8789	Pt-CHI3.10
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Potri.014G046300 [exp]	19.49	0.8260	Pt-HA1.5
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Potri.016G063900 [exp]	29.64	0.8392
AT1G79620			Leucine-rich repeat protein ki...		Potri.013G053001 [exp]	38.49	0.8328
AT5G40610			NAD-dependent glycerol-3-phosp...		Potri.017G070900 [exp]	42.74	0.7638
AT1G79620			Leucine-rich repeat protein ki...		Potri.008G125600 [exp]	45.21	0.8320
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Potri.010G143200 [exp]	70.32	0.7996	GRAS79
AT1G56140			Leucine-rich repeat transmembr...		Potri.018G132900 [exp]	78.00	0.8239
AT1G31930		XLG3	extra-large GTP-binding protei...		Potri.013G157100 [exp]	84.00	0.8241
AT1G16060	AP2_ERF	ADAP	ARIA-interacting double AP2 do...		Potri.018G102200 [exp]	91.49	0.8237

Compare expression of checked genes

Potri.012G093900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.