Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61890 144 / 3e-42 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G07310 129 / 3e-36 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G13330 123 / 1e-34 AP2_ERF RAP2.6L related to AP2 6l (.1) AT2G33710 105 / 1e-27 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2) AT5G50080 99 / 3e-25 AP2_ERF ERF110 ethylene response factor 110 (.1) AT1G43160 96 / 4e-24 AP2_ERF RAP2.6, RAP2.06 related to AP2 6 (.1) AT4G17500 89 / 6e-21 AP2_ERF ATERF-1, AtERF1 ethylene responsive element binding factor 1 (.1) AT5G47220 86 / 3e-20 AP2_ERF ATERF-2, ERF2, ATERF2 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1) AT2G47520 84 / 5e-20 AP2_ERF AtERF71, ERF71, HRE2 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 2, Arabidopsis thaliana ethylene response factor 71, Integrase-type DNA-binding superfamily protein (.1) AT3G16770 84 / 4e-19 AP2_ERF RAP2.03, ATEBP, RAP2.3 ,ERF72 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G162500 [exp] 151 / 2e-45 AT5G13330 142 / 5e-42 related to AP2 6l (.1) Potri.001G067600 [exp] 146 / 2e-43 AT5G13330 130 / 1e-37 related to AP2 6l (.1) Potri.005G195000 [exp] 98 / 2e-23 AT5G50080 108 / 5e-27 ethylene response factor 110 (.1) Potri.007G076800 [exp] 97 / 2e-23 AT2G33710 104 / 2e-26 Integrase-type DNA-binding superfamily protein (.1.2) Potri.005G087200 [exp] 95 / 5e-23 AT2G33710 87 / 4e-20 Integrase-type DNA-binding superfamily protein (.1.2) Potri.001G163700 [exp] 92 / 1e-21 AT1G53910 223 / 9e-70 related to AP2 12 (.1.2.3) Potri.003G071700 [exp] 90 / 7e-21 AT1G53910 223 / 7e-70 related to AP2 12 (.1.2.3) Potri.001G154100 [exp] 89 / 7e-21 AT4G17500 221 / 2e-71 ethylene responsive element binding factor 1 (.1) Potri.009G101900 [exp] 87 / 2e-20 AT4G34410 119 / 2e-32 redox responsive transcription factor 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022426 [exp] 112 / 2e-29 AT5G61890 170 / 1e-51 Integrase-type DNA-binding superfamily protein (.1) Lus10005805 [exp] 97 / 2e-23 AT5G61890 120 / 4e-32 Integrase-type DNA-binding superfamily protein (.1) Lus10006796 [exp] 96 / 6e-23 AT5G61890 122 / 8e-33 Integrase-type DNA-binding superfamily protein (.1) Lus10014054 [exp] 92 / 2e-22 AT4G34410 139 / 4e-40 redox responsive transcription factor 1 (.1) Lus10037448 [exp] 87 / 8e-20 AT1G53910 244 / 4e-78 related to AP2 12 (.1.2.3) Lus10004368 [exp] 86 / 2e-19 AT4G17500 268 / 7e-90 ethylene responsive element binding factor 1 (.1) Lus10016827 [exp] 85 / 2e-19 AT3G16770 183 / 4e-57 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Lus10003601 [exp] 84 / 7e-19 AT1G72360 144 / 2e-41 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10008214 [exp] 83 / 9e-19 AT1G72360 154 / 2e-45 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10013186 [exp] 84 / 1e-18 AT1G53910 254 / 7e-82 related to AP2 12 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF00847 [poplar] [flax] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Potri.012G108500.1 pacid=42782708 polypeptide=Potri.012G108500.1.p locus=Potri.012G108500 ID=Potri.012G108500.1.v4.1 annot-version=v4.1 ATGGATGTGATGGTTTCAGCTCTAGCTCAAGTAATTGGAAGCAGCCACAATAGCTCAGCTCAAGTGCAGGAAAATCCATTGACCTCAACACAATCCAGCA CAGAAAATGATCAAACCCAACCAGCTGTTCAAGACCAAGGGAATGCAAGGAGACGACATTATAGAGGAGTTAGGCAAAGGCCTTGGGGGAAATGGGCTGC TGAGATCCGAGATCCCAAGAAGGCAGCTCGAGTGTGGCTAGGCACTTTCGAAACGGCTGAGGCTGCCGCCCTTGCTTACGATGAAGCAGCTCTTAGGTTC AAAGGAAGCAAGGCTAAGCTCAACTTTCCTGAAAGGGTTCCATCTGGCGGGACCGAATTAGGTTTCTTTACTAGAGGCCAAGGTTTGCATACGGTTACTG AACCTGTCCCTAATCACATTATGGCTCCTCTAGCTCGTTCCCAACGATCACAGGAAGCATATAATCCAAATAATTTTCAATATCCACAATTTCTTGGAAC CACATCAGGCTATGGCTTAAGCCATGTCATGCCGCCTGCAGTTCCATTTGGTGGAGAAACATTTCTTTCACCGACTTCCTCCAGTGCATCTTCTAATTCG TGGCCGATATCTTCTCAACAGCAGCAGCAGCAACAAGAGGAACTTTTAAGATTATCAATGCAGTTTGGAAGTTCTTACAACTCTCGTTATGATCCTTCTA AATACAAAGACGAGGGGCTTTGA
AA sequence Show only first row Show all	>Potri.012G108500.1 pacid=42782708 polypeptide=Potri.012G108500.1.p locus=Potri.012G108500 ID=Potri.012G108500.1.v4.1 annot-version=v4.1 MDVMVSALAQVIGSSHNSSAQVQENPLTSTQSSTENDQTQPAVQDQGNARRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEAAALAYDEAALRF KGSKAKLNFPERVPSGGTELGFFTRGQGLHTVTEPVPNHIMAPLARSQRSQEAYNPNNFQYPQFLGTTSGYGLSHVMPPAVPFGGETFLSPTSSSASSNS WPISSQQQQQQQEELLRLSMQFGSSYNSRYDPSKYKDEGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G61890	AP2_ERF		Integrase-type DNA-binding sup...		Potri.012G108500 [exp]	0	1
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.007G044000 [exp]	2.23	0.9001
AT3G57540			Remorin family protein (.1)		Potri.006G053200 [exp]	4.24	0.8701
					Potri.001G042200 [exp]	4.47	0.8701
AT1G19850	ARF	IAA24, ARF5, MP	MONOPTEROS, indole-3-acetic ac...		Potri.005G236700 [exp]	8.66	0.8520
AT5G60700			glycosyltransferase family pro...		Potri.009G010900 [exp]	10.19	0.8858
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.018G149300 [exp]	10.67	0.8777	CYP716.1
AT1G30760			FAD-binding Berberine family p...		Potri.011G160900 [exp]	11.66	0.8736
AT4G08170			Inositol 1,3,4-trisphosphate 5...		Potri.009G084600 [exp]	13.41	0.8199
AT2G15780			Cupredoxin superfamily protein...		Potri.009G106000 [exp]	13.74	0.8639
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Potri.002G153500 [exp]	14.96	0.8506	ERF89

Compare expression of checked genes

Potri.012G108500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.