Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ERD1.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51070 1328 / 0 SAG15, CLPD, ERD1 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) AT5G50920 782 / 0 CLPC1, CLPC, ATHSP93-V, HSP93-V, DCA1 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) AT3G48870 772 / 0 ClpC2, ATCLPC, ATHSP93-III, HSP93-III ClpC2, Clp ATPase (.1.2) AT1G74310 535 / 4e-176 HOT1, ATHSP101 heat shock protein 101 (.1) AT4G14670 374 / 5e-118 CLPB2 casein lytic proteinase B2 (.1) AT2G25140 363 / 2e-110 HSP98.7, CLPB-M, CLPB4 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1) AT5G15450 351 / 1e-105 AtCLPB3, APG6, CLPB3, CLPB-P CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) AT3G45450 163 / 4e-44 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT1G07200 54 / 4e-07 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G40130 54 / 5e-07 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G110000 [exp] 1629 / 0 AT5G51070 1282 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Potri.012G105900 [exp] 780 / 0 AT5G50920 1505 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Potri.015G105100 [exp] 778 / 0 AT5G50920 1508 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Potri.015G056900 [exp] 566 / 0 AT1G74310 1566 / 0.0 heat shock protein 101 (.1) Potri.015G057000 [exp] 559 / 0 AT1G74310 1567 / 0.0 heat shock protein 101 (.1) Potri.005G197400 [exp] 455 / 2e-150 AT5G50920 583 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Potri.006G262700 [exp] 346 / 8e-104 AT2G25140 1361 / 0.0 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1) Potri.004G124800 [exp] 345 / 8e-104 AT5G15450 1567 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Potri.017G090600 [exp] 338 / 6e-101 AT5G15450 1598 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043013 [exp] 1364 / 0 AT5G51070 1288 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Lus10032514 [exp] 1360 / 0 AT5G51070 1280 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Lus10036017 [exp] 771 / 0 AT5G50920 1542 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10016723 [exp] 763 / 0 AT5G50920 1526 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10043014 [exp] 731 / 0 AT5G51070 664 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Lus10032544 [exp] 707 / 0 AT5G50920 1271 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10040528 [exp] 496 / 2e-161 AT1G74310 1496 / 0.0 heat shock protein 101 (.1) Lus10043197 [exp] 406 / 1e-132 AT5G50920 802 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10041018 [exp] 346 / 6e-104 AT2G25140 1511 / 0.0 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1) Lus10040527 [exp] 322 / 1e-99 AT1G74310 906 / 0.0 heat shock protein 101 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA) CL0023 [poplar] [flax] PF02861 [poplar] [flax] Clp_N Clp amino terminal domain, pathogenicity island component CL0023 [poplar] [flax] P-loop_NTPase PF07728 [poplar] [flax] AAA_5 AAA domain (dynein-related subfamily) CL0671 [poplar] [flax] AAA_lid PF10431 [poplar] [flax] ClpB_D2-small C-terminal, D2-small domain, of ClpB protein
Representative CDS sequence Show only first row Show all	>Potri.012G112000.1 pacid=42784355 polypeptide=Potri.012G112000.1.p locus=Potri.012G112000 ID=Potri.012G112000.1.v4.1 annot-version=v4.1 ATGGAAGTGTTACTGTCTTCATCATCTCCTTTATCAGTTCATTCAAGATTGGATTTTTATTCACTTCGAAAACCAAAAGATTCTAGCCTCGTCTTTCACT CCAACAACTATAACACAATATCTTCTCCTTTTTCTTCTTGTTTTGGTATTTCAATCTCACAAAAACACCAAAACAGGAAGACTCTTTTGTTAAAACGTTT TAATTCCAGCAAAAAACGAAGAATTCTTCAAGTTTCGGCTGTTTTTGAGAGGTTTACAGAGAGAGCAATAAAAGCTGTGGTTTTTTCTCAGAGAGAAGCA AGAGCTTTAGGCAAAGATATGGTTTTTACGCAGCATCTTTTGTTGGGTTTAATTATTGAAGATCGTGATCCAAATGGGTTTCTTGGGTCAGGAATCAAGA TTGATAAAGCTCGTGAAGTTGTTAAAAGTATTTGGCAGAGGGAGAGTGATAGTGCTGAAGCTAGTGAGTTAGTTTCTAAAGGCGAGAGAGGTGTTTCCCA CAGTGATGTGCCCTTTTCTGCTAGTACTAAGAGGGTTTTTGAGGCTGCTATTGAGTATTCAAGGACCATGGGTCATAATTTTATTGCGCCAGAACATATA GCCATTGGTTTGTTCACAGTTGATGATGGAAGTGCAGGTCGGGTTCTTAACAGATTGGGGGTAGATGGTGATGCCTTAGCTGCTATAGCAATAACCAAAC TTCAAGGGGAGCTTGTGAAAGATGGAAGAGAACCATCTGTGGAATCAAAAGGCAAACATGGGAAATCTGTTTCCAAGAGAGCTGCTGCTTTAAGATCCTA TGAGAAAACAAAAGAGAAAAGTGCATTGGCCCAATTCTGTGTTGATCTTACTGCCCGTGCAAGTGAAGGACGCATTGATCCAGTTATTGGGCGACACTCT GAAATTGAAAGAATTGTCCAGATACTTTGCCGCAGAACAAAAAATAACCCCATCCTTCTTGGTGAAAGTGGAGTTGGAAAGACAGCCATTGCCGAAGGAT TAGCTATTAAAATTGCACAGGCTGACATTCCTGTGTTTCTTTTGGAAAAGCGTGTAATGTCCTTGGATGTTGGCCTGTTAATTGCTGGTGCAAAGGAAAG GGGAGAACTAGAGGCACGTGTTACTTCATTAATAAGAGAGATTCAGAAAGAAGGTGATGTCATTCTTTTTATTGATGAAGTGCATACGCTTGTTGGGACT GGCACTGTTGGACGAGGAAACAAGGGATCTGGCCTTGACATTGCTAATATATTGAAGCCATCTCTTGGGAGGGGTGAATTACAGTGTATTGCGTCCACAA CACTTGATGAATACAGAACACATTTTGAAATTGATAAAGCATTAGCAAGGAGATTCCAGCCTGTTTTGATTAATGAGCCAAGCCAGGAGGATGCAATTAG GATATTGTTGGGTCTGCGTCAAAGATATGAGGCCCATCACAACTGCAGATTCACGCCGGAAGCCATAAATGCTGCAGTGCACCTGTCAGCAAGATATATT GCTGACAGGTATCTTCCAGATAAAGCAATTGATCTCATTGATGAGGCAGGAAGTAGAGCTCGTATCGAGGCCTATAGAAGGAAGAAAGAACAGCAAACCT TTATACTTTCAAAGACACCAGATGATTATTGGCAAGAAATTAGAACTGTTCAGGCTATGCATGAAGTGGTTCTAGCAAGTAGATTGGCAAATGATTGCAG TTTATCCAGCATGGATGGCAGTGGAGAAATCACTATTGAATCTTCTTTACCTCCCGCATCAAATGCTGATGAACCTGCTGTGGTGGGGCCTGACGATATA GCAGCCGTTGCTTCCCTCTGGTCAGGTATACCGGTTCAGCAGCTGACTGCTGATGAAAGAAAGTTTCTCGTGGGCCTTGAAGAGGAGCTCAGGAAACGAG TGATTGGTCAAGATGAGGCTGTTGCTGCAATATCTCGAGCTGTTAAGAGATCCCGTGTTGGCTTGAAGGATCCTGATAGGCCCATAGCAGCAATGCTGTT TTGCGGCCCAACTGGGGTCGGCAAGACTGAACTAACAAAAGCTTTGGCTCGAAATTATTTTGGATCCGAGTCAGCCATGCTTAGATTAGATATGAGTGAG TATATGGAACGACACACTGTGAGCAAGTTAATAGGAGCTCCTCCAGGTTATGTTGGTTATGGCAAGGGGGGCATTCTGACAGAATCTATTAGAAAACAGC CTTTCACTGTTGTTTTGCTTGATGAAATAGAGAAAGCCCATCCAGATATATTCAACATTCTGCTTCAATTATTTGAAGATGGCCATCTTACAGATTCTCA GGGAAGGAGAGTATCTTTTAAGAATGCATTGGTAGTAATGACATCAAATGTTGGTTCTGCTGCCATTGCAAAGGGTGGACGAGCCTCCATTGGTTTCATG ATTGAAGATAATGAGAATTCTTCATATGCTGCAATGCAATCATTGATAATGGAAGAACTCAAGGGATATTTTCGTCCAGAGTTGCTCAACAGAATAGACG AAGTTGTGGTATTCCATCCCCTTGAAAAGGCTCAGATGCTCCAGATTTTGAATCTTATGCTGCAAGAGGTGAAAGAAAGGCTGATATCTCTTGGAATTGG GTTAGAGGTGTCAGAGTCGATCAAAGATCTTATATGCCAGCAAGGCTATGACAAGTTTTACGGCGCCCGGCCTCTTAGGAGAGCAGTTACTCAAGTAATC GAAAACCCCTTGAGTGAAGCATTCCTTGCAGGACAGTTTAAGCCTGGTGACACAGCTTTCATTGATCTGGATGCTTCAGGCAACCCAGTTGTCTCAAAAT GGTCAGATAGGAGCATGCACTTGTCTGATACATCATCAGCCTCCTAG
AA sequence Show only first row Show all	>Potri.012G112000.1 pacid=42784355 polypeptide=Potri.012G112000.1.p locus=Potri.012G112000 ID=Potri.012G112000.1.v4.1 annot-version=v4.1 MEVLLSSSSPLSVHSRLDFYSLRKPKDSSLVFHSNNYNTISSPFSSCFGISISQKHQNRKTLLLKRFNSSKKRRILQVSAVFERFTERAIKAVVFSQREA RALGKDMVFTQHLLLGLIIEDRDPNGFLGSGIKIDKAREVVKSIWQRESDSAEASELVSKGERGVSHSDVPFSASTKRVFEAAIEYSRTMGHNFIAPEHI AIGLFTVDDGSAGRVLNRLGVDGDALAAIAITKLQGELVKDGREPSVESKGKHGKSVSKRAAALRSYEKTKEKSALAQFCVDLTARASEGRIDPVIGRHS EIERIVQILCRRTKNNPILLGESGVGKTAIAEGLAIKIAQADIPVFLLEKRVMSLDVGLLIAGAKERGELEARVTSLIREIQKEGDVILFIDEVHTLVGT GTVGRGNKGSGLDIANILKPSLGRGELQCIASTTLDEYRTHFEIDKALARRFQPVLINEPSQEDAIRILLGLRQRYEAHHNCRFTPEAINAAVHLSARYI ADRYLPDKAIDLIDEAGSRARIEAYRRKKEQQTFILSKTPDDYWQEIRTVQAMHEVVLASRLANDCSLSSMDGSGEITIESSLPPASNADEPAVVGPDDI AAVASLWSGIPVQQLTADERKFLVGLEEELRKRVIGQDEAVAAISRAVKRSRVGLKDPDRPIAAMLFCGPTGVGKTELTKALARNYFGSESAMLRLDMSE YMERHTVSKLIGAPPGYVGYGKGGILTESIRKQPFTVVLLDEIEKAHPDIFNILLQLFEDGHLTDSQGRRVSFKNALVVMTSNVGSAAIAKGGRASIGFM IEDNENSSYAAMQSLIMEELKGYFRPELLNRIDEVVVFHPLEKAQMLQILNLMLQEVKERLISLGIGLEVSESIKDLICQQGYDKFYGARPLRRAVTQVI ENPLSEAFLAGQFKPGDTAFIDLDASGNPVVSKWSDRSMHLSDTSSAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Potri.012G112000 [exp]	0	1	Pt-ERD1.4
AT3G05970		LACS6, ATLACS6	long-chain acyl-CoA synthetase...		Potri.010G090200 [exp]	1.00	0.9400	Pt-LACS6.1
AT4G25160			U-box domain-containing protei...		Potri.004G233000 [exp]	2.00	0.9322
AT1G11340			S-locus lectin protein kinase ...		Potri.011G035901 [exp]	2.44	0.9303
AT5G10490		MSL2	MSCS-like 2 (.1.2.3)		Potri.007G011100 [exp]	2.82	0.9242
AT1G68940			Armadillo/beta-catenin-like re...		Potri.003G201000 [exp]	4.24	0.9094
AT3G13080		EST2, ATMRP3, A...	MULTIDRUG RESISTANCE PROTEIN 3...		Potri.003G198401 [exp]	7.74	0.9003
AT1G28380		NSL1	necrotic spotted lesions 1, MA...		Potri.004G047700 [exp]	8.36	0.9085
AT3G20770	EIL	AtEIN3, EIN3	ETHYLENE-INSENSITIVE3, Ethylen...		Potri.008G011300 [exp]	9.00	0.8845	CMEIL2.2,EIN3D
AT5G49900			Beta-glucosidase, GBA2 type fa...		Potri.003G003400 [exp]	16.73	0.9138
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Potri.001G048700 [exp]	19.00	0.8907

Compare expression of checked genes

Potri.012G112000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.