Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14470 398 / 3e-122 NB-ARC domain-containing disease resistance protein (.1) AT3G14460 327 / 2e-94 LRR and NB-ARC domains-containing disease resistance protein (.1) AT3G50950 255 / 7e-72 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT3G07040 239 / 1e-65 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT1G58400 214 / 2e-57 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G53350 205 / 1e-54 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G43470 204 / 5e-54 HRT, RCY1, RPP8 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT5G35450 202 / 1e-53 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G59124 197 / 3e-52 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58807 197 / 3e-52 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G122900 [exp] 1549 / 0 AT3G14470 414 / 6e-129 NB-ARC domain-containing disease resistance protein (.1) Potri.012G123500 [exp] 1537 / 0 AT3G14470 395 / 4e-121 NB-ARC domain-containing disease resistance protein (.1) Potri.012G123200 [exp] 1522 / 0 AT3G14470 407 / 1e-125 NB-ARC domain-containing disease resistance protein (.1) Potri.012G121801 [exp] 1519 / 0 AT3G14470 410 / 3e-127 NB-ARC domain-containing disease resistance protein (.1) Potri.012G122200 [exp] 1495 / 0 AT3G14470 411 / 2e-127 NB-ARC domain-containing disease resistance protein (.1) Potri.012G121876 [exp] 1382 / 0 AT3G14470 404 / 6e-125 NB-ARC domain-containing disease resistance protein (.1) Potri.012G123400 [exp] 1363 / 0 AT3G14470 376 / 2e-115 NB-ARC domain-containing disease resistance protein (.1) Potri.012G121851 [exp] 1290 / 0 AT3G14470 348 / 2e-105 NB-ARC domain-containing disease resistance protein (.1) Potri.012G121750 [exp] 1069 / 0 AT3G14470 338 / 8e-103 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003571 [exp] 550 / 0 AT3G14470 363 / 6e-110 NB-ARC domain-containing disease resistance protein (.1) Lus10022900 [exp] 538 / 8e-176 AT3G14470 350 / 2e-104 NB-ARC domain-containing disease resistance protein (.1) Lus10002609 [exp] 532 / 5e-174 AT3G14470 364 / 9e-110 NB-ARC domain-containing disease resistance protein (.1) Lus10004126 [exp] 520 / 2e-169 AT3G14470 353 / 6e-106 NB-ARC domain-containing disease resistance protein (.1) Lus10004127 [exp] 516 / 4e-168 AT3G14470 350 / 5e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10022792 [exp] 510 / 4e-165 AT3G14470 343 / 7e-102 NB-ARC domain-containing disease resistance protein (.1) Lus10024173 [exp] 406 / 2e-123 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039509 [exp] 404 / 2e-122 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10005321 [exp] 404 / 4e-122 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039540 [exp] 394 / 6e-120 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.012G121900.1 pacid=42783460 polypeptide=Potri.012G121900.1.p locus=Potri.012G121900 ID=Potri.012G121900.1.v4.1 annot-version=v4.1 ATGGCTTGTGGAGCATTAAGACGCGACTGCTATGAAGGAGCAGAGGGCATGCGCAGGTTCCGGGAACAAGTTGACTCTTGTCAAGGTGGTGAGCTCAGTA ATGACATTGTAATACTCAGAGTACAAGAAGAGGTGAACCTAGTAGTGGGTGTGAAGAAACAATGTGACAAGCTGAAAAGCAATCTCCTTGATATCCAATC TGTCCTTGAAGATGCAGATAGAAAACAAGTGAAGGATAAGGCTGTAAGAGATTGGGTAGACAAGCTCAAAGATGCATGTTATGATATGGATGACGTGCTA GATGAATGGAGCACTGCAATTCTTAGATGGAAAATGGAGGAAGCTGAAGAAAATACTCACAGCCGACAGAAGATACGGTGTTCCTTCCTGGGATCTCCTT GCTTTTGTTTCAATCAAGTGGTTCGACGTCGCGACATTGCCCTGAAGATCAAAGAAGTTAGTGAAAAAGTGGATGACATTGCCAAAGAGAGAGCTAAGTA TGGCTTTGATCTGTACAAAGCCACTGATGAACTCCAGCGACGACCAACAAGAACAAGTACCTCCTTTGTTGATGAATCAAGCGTGATTGGTCGAGATGGT GAAAAGAAAACTGTTTTAAGCAAGTTGGTGGGTGAAAGTAGTCAGGAAGCACGGGACGTTGATGTCATCTCTCTAGTAGGGCTGGGCGGAATTGGAAAAT CAACTCTCGCCCAACTAGCTTTTAATGATGCTGAGGTTACGGCTCATTTTGAGAAAAAGATATGGGTGTGTGTTTCAGAACCATTTGATGAGGTTAGAAT AGCCAAAGCAATCCTTGAGCAGCTTGAAGGGAGACCAACGAATTTGGTTGAATTGCAATCCCTTTTGCAAGGGGTTTCTGAATCCATTACTGGAAAGAGG CTCCTTCTTGTCCTTGATGATGTCTGGACAGAAAATCATGAACAATGGGAAAAACTGAAACCATCTCTCACAGGCTGTGCACGAGGAAGCAGAATTCTAG TGACCACTCGTAAGGACGCTGTGGCAACGATGATGGGAACTACCCACCGGATCAACATTGAGAAATTGTCCGATGAGATATGCAGGTCAATATTCAATCA TGTGGCATTCCAGGAAAGAAGCGAAGATGAGCGCGAAAGATTGACAGATATCGGCGATAAAATTGCAAACAAGTGCAAGGGCTTGCCTCTAGCTGCCAAG GTATTAGGAGGTCTAATGCAGTCTAAAAGAACAAGAGAAGAGTGGGAACGTGTTTTATCTAGCGAACTGTGGAGGCTAGATGAGGTTGATAGAGATCAGG TTGAAAGACGAATATTTCTACCTTTGCTTTTGAGTTACTACGATTTACATTATGTGGTAAGACGATGTTTCTTGTATTGTGCCATGTTTCCAAAAGACTA CGAGATGGGAAAATATGAATTGGTGAAGATGTGGATAGCTCAAGGTTACCTCAAGGAGACTTCAGGTGGAGATATGGAGCTTGTAGGAGAGCAGTACTTT CAAGTCTTAGCAGCGCGCTCTTTCTTCCAAGATTTTGAGACGGATGAGGGTGAAGGAATGAAATTCAAGATGCATGATATAGTGCATGATTTTGCCCAAT ATATGACAAAAAATGAATGTCTAACAGTGGATGTCAATACACTTAGAGAAGCAACAGTTGATACTTCAATTGAAAGGGTTCGTCATTTAAGCATGATGCT GTCAGAGGAGACCTCTTTTCCCAAGTCCATTCACAAAGCAAAAGGTCTTCGCAGCCTCTTGATCGACACTAGAGACCCTTCGCTTGGAGCTGCACTGCCT GATTTGTTCAAGCATTTGACATGCATCAGGTTATTGAATTTGTCAGGGTCTTCAATCAAAGAAATACCAAACGAGGTATGGAAATTGATACATTTGAGAC ACCTCAATTTGGCATATTGTAGAGAGTTGGTGTCCCTGCCAGAAACCATGTGTGATTTATGCAATCTGCAATCCCTAGACGTTACTTGGTGTCATTGTCT CAAGGAATTGCCCAAGGCGATTGGAAAACTTATCAAATTGAGGCATCTCCGGATTTATGCTTCAGGTGTGGCCTTCATACCAAAGGGAATAGAGAGGATA ACATGTCTTCGAACATTAGATGTGTTTACTGTGTGTGGTGGTGGTGAGAATGAAAGTAAAGCAGCTAATTTAAGAGAATTAAAAAACTTAAATCACATTG GGGGGAGTCTTAATATACAGAATCTAGGAGGAGGTAAAGAAGATGCGAGTGACGCTGCAGAAGCACAACTCAAGAATAAGAAGCGCCTGCTTCGTTTGCT ATTGGATTTCAACCACAACCAGGATAACGGCATTTTAATTGAAGCTTTACGGCCTCCGTCAGACTTGGAAAGTCTAATCATACGGGGTTACGGAGGGTTG GATTTGCCAAATTGGATGATGACATTAACCAGATTACAGGTGCTTACACTCCGTATTTGTGAAAACGTGGAGGTCTTGCCTCCGTTGGGAAGATTGCCCA ACCTTGAAAGCCTGCTATTGATCTCGTTGAAGGTGAGAAGGCTGGATGGTGGATTTTTAGGTATAGAAAAAGATGAGAATGCCAGTATCAATGAAGGAGA AATTGCAAGGGTCACTGCTTTCCCCAAATTAAAAACACTTAGTTTTTGGCATCTCAAAGAAGTAGAAGAGTGGGATGGAATTGAAAGGAGATCAGTGGGA GAAGAAGATGCCAACACAACTTCAATACCCATTATGCCACAACTTCAAGAGTTGAGAATTATGAACTGCCCGTTGCTGAGAGCAGTACCAGACTATGTTT TGGCAGCGCCCCTACAGACATTGGTCATAGATGTTTGCCCCAATCTAAGGAAACGTTACGGGAAGAAGGGTGAAGATTGGCAAAAGATTTCTCACATCCC TAACACTTCTTATTGTTTAAAGAATAGTTAA
AA sequence Show only first row Show all	>Potri.012G121900.1 pacid=42783460 polypeptide=Potri.012G121900.1.p locus=Potri.012G121900 ID=Potri.012G121900.1.v4.1 annot-version=v4.1 MACGALRRDCYEGAEGMRRFREQVDSCQGGELSNDIVILRVQEEVNLVVGVKKQCDKLKSNLLDIQSVLEDADRKQVKDKAVRDWVDKLKDACYDMDDVL DEWSTAILRWKMEEAEENTHSRQKIRCSFLGSPCFCFNQVVRRRDIALKIKEVSEKVDDIAKERAKYGFDLYKATDELQRRPTRTSTSFVDESSVIGRDG EKKTVLSKLVGESSQEARDVDVISLVGLGGIGKSTLAQLAFNDAEVTAHFEKKIWVCVSEPFDEVRIAKAILEQLEGRPTNLVELQSLLQGVSESITGKR LLLVLDDVWTENHEQWEKLKPSLTGCARGSRILVTTRKDAVATMMGTTHRINIEKLSDEICRSIFNHVAFQERSEDERERLTDIGDKIANKCKGLPLAAK VLGGLMQSKRTREEWERVLSSELWRLDEVDRDQVERRIFLPLLLSYYDLHYVVRRCFLYCAMFPKDYEMGKYELVKMWIAQGYLKETSGGDMELVGEQYF QVLAARSFFQDFETDEGEGMKFKMHDIVHDFAQYMTKNECLTVDVNTLREATVDTSIERVRHLSMMLSEETSFPKSIHKAKGLRSLLIDTRDPSLGAALP DLFKHLTCIRLLNLSGSSIKEIPNEVWKLIHLRHLNLAYCRELVSLPETMCDLCNLQSLDVTWCHCLKELPKAIGKLIKLRHLRIYASGVAFIPKGIERI TCLRTLDVFTVCGGGENESKAANLRELKNLNHIGGSLNIQNLGGGKEDASDAAEAQLKNKKRLLRLLLDFNHNQDNGILIEALRPPSDLESLIIRGYGGL DLPNWMMTLTRLQVLTLRICENVEVLPPLGRLPNLESLLLISLKVRRLDGGFLGIEKDENASINEGEIARVTAFPKLKTLSFWHLKEVEEWDGIERRSVG EEDANTTSIPIMPQLQELRIMNCPLLRAVPDYVLAAPLQTLVIDVCPNLRKRYGKKGEDWQKISHIPNTSYCLKNS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14470			NB-ARC domain-containing disea...		Potri.012G121900 [exp]	0	1
AT3G14470			NB-ARC domain-containing disea...		Potri.012G121801 [exp]	1.00	0.9862
AT3G14470			NB-ARC domain-containing disea...		Potri.012G121851 [exp]	2.82	0.9131
AT4G27220			NB-ARC domain-containing disea...		Potri.019G011826 [exp]	3.46	0.9073
AT3G14470			NB-ARC domain-containing disea...		Potri.012G121876 [exp]	8.30	0.8728
AT5G36930			Disease resistance protein (TI...		Potri.011G015400 [exp]	9.16	0.8992
AT3G42170			BED zinc finger ;hAT family di...		Potri.017G019466 [exp]	9.32	0.9244
AT3G14470			NB-ARC domain-containing disea...		Potri.012G122200 [exp]	9.48	0.9125
AT4G35780		STY17	serine/threonine/tyrosine kina...		Potri.007G060600 [exp]	14.96	0.8793
AT4G27220			NB-ARC domain-containing disea...		Potri.001G444050 [exp]	15.00	0.8924
AT2G03890		UBDKGAMMA7, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Potri.017G101500 [exp]	15.96	0.8463

Compare expression of checked genes

Potri.012G121900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.