Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14470 144 / 4e-38 NB-ARC domain-containing disease resistance protein (.1) AT3G50950 118 / 3e-29 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT3G14460 117 / 1e-28 LRR and NB-ARC domains-containing disease resistance protein (.1) AT5G43470 96 / 9e-22 HRT, RCY1, RPP8 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G59780 94 / 7e-21 NB-ARC domain-containing disease resistance protein (.1) AT3G07040 91 / 4e-20 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT5G48620 89 / 3e-19 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G59620 89 / 4e-19 CW9 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G53350 88 / 6e-19 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58848 87 / 9e-19 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G123500 [exp] 570 / 0 AT3G14470 395 / 4e-121 NB-ARC domain-containing disease resistance protein (.1) Potri.012G121801 [exp] 563 / 0 AT3G14470 410 / 3e-127 NB-ARC domain-containing disease resistance protein (.1) Potri.012G122900 [exp] 515 / 1e-177 AT3G14470 414 / 6e-129 NB-ARC domain-containing disease resistance protein (.1) Potri.012G121900 [exp] 515 / 5e-177 AT3G14470 399 / 2e-122 NB-ARC domain-containing disease resistance protein (.1) Potri.012G121750 [exp] 486 / 9e-169 AT3G14470 338 / 8e-103 NB-ARC domain-containing disease resistance protein (.1) Potri.012G122200 [exp] 492 / 3e-168 AT3G14470 411 / 2e-127 NB-ARC domain-containing disease resistance protein (.1) Potri.012G123200 [exp] 483 / 2e-164 AT3G14470 407 / 1e-125 NB-ARC domain-containing disease resistance protein (.1) Potri.012G121876 [exp] 463 / 5e-157 AT3G14470 404 / 6e-125 NB-ARC domain-containing disease resistance protein (.1) Potri.012G123400 [exp] 429 / 6e-145 AT3G14470 376 / 2e-115 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003571 [exp] 179 / 3e-50 AT3G14470 363 / 6e-110 NB-ARC domain-containing disease resistance protein (.1) Lus10022792 [exp] 175 / 8e-49 AT3G14470 343 / 7e-102 NB-ARC domain-containing disease resistance protein (.1) Lus10022900 [exp] 167 / 4e-46 AT3G14470 350 / 2e-104 NB-ARC domain-containing disease resistance protein (.1) Lus10002609 [exp] 161 / 5e-44 AT3G14470 364 / 9e-110 NB-ARC domain-containing disease resistance protein (.1) Lus10004127 [exp] 157 / 2e-42 AT3G14470 350 / 5e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10004126 [exp] 157 / 2e-42 AT3G14470 353 / 6e-106 NB-ARC domain-containing disease resistance protein (.1) Lus10024173 [exp] 148 / 2e-39 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10002736 [exp] 137 / 1e-36 AT3G14470 317 / 1e-98 NB-ARC domain-containing disease resistance protein (.1) Lus10016316 [exp] 139 / 2e-36 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1) Lus10005218 [exp] 128 / 1e-32 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.012G123000.4 pacid=42782675 polypeptide=Potri.012G123000.4.p locus=Potri.012G123000 ID=Potri.012G123000.4.v4.1 annot-version=v4.1 ATGGCTGACGCACTTGTATCCCCAATTTTGGAGCAGTTAACCACGATCGTTGCTCGACAGGTACAAGAACAGGTGAACCTAGTAGTGGGTGTGAAGAAAC AATGTGACAAGCTGAAAAGCAATCTCCTTGATATCCAATCTGTCCTTGAAGATGCAGATAGAAAACAAGTGAAGGATAAGGCTATGAATGGAAGCACTGC AATTCTTCGATGGAAAATGGAGGAAGCTGTAGAAAATACTCACAGCCGACAGAAGATACAGTGTTCCTTCCTGGGATCTCCTTGCTTTTGTTTCAATCAA GTGGTTCGACGTCGCGACATTGCCCTGAAGATCAAAGAAGTTAGTGAAAAAGTGGATGACATTGCCAAAGAGAGAGCTAAGTATGGCTTTGATCTGTACA AAGCCACTGATGAACTACAGCGACTAACAACTACCTCATTTGTTGATGAATCAAGCGTGATTGGTCGAGACGGCGAAAAGAGAAATGTTGTAAGCAAGTT GCTGGCTGAAAGTAGTCAAGAAGCACGGGACGTGGATGTCATCTCTCTAGTAGGGCTGGGAGGAATTGGAAAACTCGCCCAACTAGCTTTTAATGATGCT AAGGTTACGGATCATTTTGAGAAAAAGATATGGGTGTGTGTATCAGATCCATTTGATGAGGTTAGAATAGCCAAAGCTATCCTTGAGGAGCTTGAAGGGA GGGCATCTGATTTGGTAGGATTGCAATCCCTTTTGCGAAGGGTTTCTGAATCCATTAAGGGAAAGAGGTTCCTTCTTGTCCTTGATGATGTCTGGACAGA AAATCATGGACAATGGGAACAACTGAAACCATCTCTCACAGGCTGTGCACGAGGAAGCAGAATTCTAGTGACCACTCGTAAGGACGCTGTGGCAACGATG ATGGAAACTGACCACCGGATCAACATTGAGAAATTGTCCGATGAGATAGGTGAGAAAGACAGAACTCTTTAG
AA sequence Show only first row Show all	>Potri.012G123000.4 pacid=42782675 polypeptide=Potri.012G123000.4.p locus=Potri.012G123000 ID=Potri.012G123000.4.v4.1 annot-version=v4.1 MADALVSPILEQLTTIVARQVQEQVNLVVGVKKQCDKLKSNLLDIQSVLEDADRKQVKDKAMNGSTAILRWKMEEAVENTHSRQKIQCSFLGSPCFCFNQ VVRRRDIALKIKEVSEKVDDIAKERAKYGFDLYKATDELQRLTTTSFVDESSVIGRDGEKRNVVSKLLAESSQEARDVDVISLVGLGGIGKLAQLAFNDA KVTDHFEKKIWVCVSDPFDEVRIAKAILEELEGRASDLVGLQSLLRRVSESIKGKRFLLVLDDVWTENHGQWEQLKPSLTGCARGSRILVTTRKDAVATM METDHRINIEKLSDEIGEKDRTL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14470			NB-ARC domain-containing disea...		Potri.012G123000 [exp]	0	1
AT3G14470			NB-ARC domain-containing disea...		Potri.012G122200 [exp]	1.00	0.9716
AT5G36930			Disease resistance protein (TI...		Potri.011G015050 [exp]	14.49	0.9341
AT4G10780			LRR and NB-ARC domains-contain...		Potri.017G035300 [exp]	17.88	0.9172
AT5G17680			disease resistance protein (TI...		Potri.019G070565 [exp]	18.00	0.9245
AT4G27220			NB-ARC domain-containing disea...		Potri.019G020102 [exp]	19.97	0.9299
AT5G36930			Disease resistance protein (TI...		Potri.011G008164 [exp]	21.67	0.9276
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Potri.006G165900 [exp]	22.36	0.9135
AT5G21930		ATHMA8, HMA8, P...	ARABIDOPSIS HEAVY METAL ATPASE...		Potri.006G220301 [exp]	23.23	0.8988
AT5G01750			Protein of unknown function (D...		Potri.016G130800 [exp]	23.45	0.8975
AT5G36930			Disease resistance protein (TI...		Potri.011G014301 [exp]	24.79	0.9200

Compare expression of checked genes

Potri.012G123000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.