Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14470 395 / 4e-121 NB-ARC domain-containing disease resistance protein (.1) AT3G14460 340 / 6e-99 LRR and NB-ARC domains-containing disease resistance protein (.1) AT3G50950 266 / 5e-76 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT3G07040 256 / 1e-71 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT5G35450 227 / 6e-62 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G43470 224 / 7e-61 HRT, RCY1, RPP8 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G53350 223 / 2e-60 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G48620 219 / 3e-59 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58390 207 / 4e-55 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58410 206 / 5e-55 Disease resistance protein (CC-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G122900 [exp] 1505 / 0 AT3G14470 414 / 6e-129 NB-ARC domain-containing disease resistance protein (.1) Potri.012G121801 [exp] 1498 / 0 AT3G14470 410 / 3e-127 NB-ARC domain-containing disease resistance protein (.1) Potri.012G121900 [exp] 1488 / 0 AT3G14470 399 / 2e-122 NB-ARC domain-containing disease resistance protein (.1) Potri.012G123200 [exp] 1487 / 0 AT3G14470 407 / 1e-125 NB-ARC domain-containing disease resistance protein (.1) Potri.012G122200 [exp] 1476 / 0 AT3G14470 411 / 2e-127 NB-ARC domain-containing disease resistance protein (.1) Potri.012G121876 [exp] 1368 / 0 AT3G14470 404 / 6e-125 NB-ARC domain-containing disease resistance protein (.1) Potri.012G123400 [exp] 1352 / 0 AT3G14470 376 / 2e-115 NB-ARC domain-containing disease resistance protein (.1) Potri.012G121851 [exp] 1236 / 0 AT3G14470 348 / 2e-105 NB-ARC domain-containing disease resistance protein (.1) Potri.012G121750 [exp] 1109 / 0 AT3G14470 338 / 8e-103 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022900 [exp] 575 / 0 AT3G14470 350 / 2e-104 NB-ARC domain-containing disease resistance protein (.1) Lus10022792 [exp] 549 / 2e-180 AT3G14470 343 / 7e-102 NB-ARC domain-containing disease resistance protein (.1) Lus10003571 [exp] 545 / 2e-179 AT3G14470 363 / 6e-110 NB-ARC domain-containing disease resistance protein (.1) Lus10004126 [exp] 538 / 1e-176 AT3G14470 353 / 6e-106 NB-ARC domain-containing disease resistance protein (.1) Lus10002609 [exp] 528 / 1e-172 AT3G14470 364 / 9e-110 NB-ARC domain-containing disease resistance protein (.1) Lus10004127 [exp] 524 / 1e-171 AT3G14470 350 / 5e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10039540 [exp] 413 / 4e-127 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10024173 [exp] 407 / 4e-124 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10007261 [exp] 398 / 2e-120 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039509 [exp] 397 / 4e-120 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.012G123500.2 pacid=42783995 polypeptide=Potri.012G123500.2.p locus=Potri.012G123500 ID=Potri.012G123500.2.v4.1 annot-version=v4.1 ATGGCTGAGGCACTTCTATCTCCGATCTTGGAGCAGTTAACCACAATCGTTGCTCAACAGGTACAAGAAGAGGTGAACCTAGTAGTGGGTGTGAAGAAAC AATGTGACAAGCTGAAAAGCAATCTCCTTGATATCCAATCTGTCCTTGAAGATGCAGATAGAAAACAAGTGAAAGATAAGGCTGTAAGAGATTGGCTAGA CAAGCTCAAAGATGCATGTTATGATATGGATGACGTGCTAGATGAATGGAGAACTGCAATTCTTAGATGGAAAATGGAGGAAGCTGAAGAAAATACTCAC AGCCGACAGAAGATACGGTGTTCCTTCCTGGGATCTCCTTGCTTTTGTTTCAATCAAGTGGTTCGACGTCGCGACATTGCCCTGAAGATCAAAGAAGTTC GTAAAAAAGTGGATGACATTGCCAAAGAGAGAGCTAAGTATGGCTTCGATCTGTACAAAACCACTGATGAACTCCAGCGACTAACAACTACCTCCTTTGT TGATGAATCAAGCGTGATTGGTCGAGATGGTGAAAAGAGAAATGTTGTAAGCAAGTTGCTGGCTGAAAGTAGTCAAGAAGCACGGGACGTGGATGTCATC TCTCTAGTAGGGCTGGGAGGAATTGGAAAAACAACTCTCGCCCAACTAGCTTTTAATGATGCTGAGGTTACGGCTCATTTTGAGAAAAAGATATGGGTGT GTGTTTCCGAACCATTTGATGAGGTTAAGATAGCCAAAGCTATCCTTGAGGAGCTTGAAGGGAGGGCATCCGATTTGGTAGGATTGCAATCCCTTTTGCG AAGGGTTTCTGAATCCATTGAGGGAAAGAGGTTCCTTCTTGTCCTTGATGATGTATGGACAGAAAATCACGGACAATGGGAACAACTGAAACCATCTCTC ACAGGCTGTGCACGAGGAAGCAGAATTCTAGTGACCACTCGTAAGGACGCTGTGGCAACGATGATGGGAAGTACTGGCCACCGGATCAACATTAAGGAAT TGTCCGACGAGATATGCAGGTCAATATTCAATCATGTGGCATTCCAGGAAAGAAGCGAAGATGAGCGCGAAAGATTGACAGATATCGGCGATAAAATTGC AAACAAGTGCAAGGGCTTGCCTCTAGCTGCCAAGGTATTAGGAGGTCTAATGCAGTCTAAAAGAACAAGAGAAGAGTGGGATCGTGTTTTATCTAGCGAA CTGTGGAGGCTAGATGAGGTTGATAGAGATCAAGTTGAACGACGAATATTTATACCTTTGCTCTTGAGTTACTACGATTTACCTTCTGTGGTAAGACGAT GTTTCTTGTATTGTGCCATGTTTCCAAAAGACTACGAGATGGACAAAGATGAATTGGTGAAGATGTGGATGGCTCAGGGTTACCTCAAGGAGACTTCAGG TGGAGATATGGAGCTTGTAGGAGAGCAGTACTTTCAAGTCTTAGCAGCGCGCTCTTTCTTCCAAGATTTTGAGACGGATGAGGATGAAGGAATGACATTC AAGATGCATGATATAGTGCATGATTTTGCCCAATATATGACAAAAAATGAATGTCTAACAGTGGATGTCAATACACTTGGAGGAGCAACAGTGGAGACTT CAATTGAAAGGGTTCGTCATTTAAGCATGATGCTGCCCAACGAGACCTCTTTTCCCGTGTCCATTCACAAAGCAAAAGGTCTTCGCAGCCTCTTGATCGA CACTAGAGACCCTTCGCTTGGAGCTGCACTGCCTGATTTGTTCAAGCAGTTGACATGCATCAGGTCATTGAATTTGTCAAGGTCTCAAATCAAAGAAATA CCAAACGAGGTAGGGAAATTGATACATTTGAGACACCTCAATTTGGCATGGTGTGTAGAGTTGGAGTCCCTGCCAGAAACCATTTGTGATTTATGCAATC TGCAATCCCTAGACGTTACTTGGTGCCGGTCTCTCAAGGAATTGCCCAAGGCGATTGGAAAACTTATCAAATTGAGGCATCTCTGGATTGATAGTTCAGG AGTGGCCTTCATACCAAAGGGAATAGAGAGGATAACATGTCTTCGAACATTAGATAAGTTTACTGTGTGTGGTGGTGGTGAGAATGAAAGTAAAGCAGCT AATCTAAGAGAATTAAAAAACTTAAATCACATTGGAGGGAGTCTCAGAATAGACAAAGTAAGAGATATAGAAAATGTGAGAGACGTCGTGGATGCACTAC TCAATAAGAAGCGCCTACTTTGCTTGGAATGGAATTTCAAGGGAGTGGATTCCATCTTGGTGAAAACAGAGTTGCCAGAGCATGAAGGCTCTTTAATTGA AGTTTTACGGCCTCCGTCAGACTTGGAAAATCTAACCATACGGGGTTACGGAGGGTTGGATTTGCCAAATTGGATGATGACATTAACCAGATTACGGATG CTTTCACTTGGTCCTTGTGAAAACGTGGAGGTCTTGCCTCCGTTGGGAAGATTGCCCAACCTTGAACGCCTGCTGTTGTTCTTCTTGAAGGTGAGAAGGC TGGATGCTGGGTTTTTAGGTGTAGAAAAGGATGAGAATGAAGGAGAAATTGCAAGGGTCACTGCTTTCCCCAAATTAAAAAGTTTTCGGATTAGGTATCT CGAAGAAATAGAAGAGTGGGATGGAATTGAAAGGAGAGTGGGAGAAGAAGATGCCAACACAACTTCAATAATATCCATTATGCCACAACTTCAATATTTG GGAATTCGCAAGTGCCCATTGTTGAGAGCACTACCGGACTATGTTTTGGCAGCGCCTCTACAGGAATTGGAGATAATGGGTTGCCCCAATCTAACAAATC GTTACGGGGAGGAGGAGATGGGTGAAGATTGGCAAAAGATTTCTCACATCCCAAACATTTATTTTCATGATATATAG
AA sequence Show only first row Show all	>Potri.012G123500.2 pacid=42783995 polypeptide=Potri.012G123500.2.p locus=Potri.012G123500 ID=Potri.012G123500.2.v4.1 annot-version=v4.1 MAEALLSPILEQLTTIVAQQVQEEVNLVVGVKKQCDKLKSNLLDIQSVLEDADRKQVKDKAVRDWLDKLKDACYDMDDVLDEWRTAILRWKMEEAEENTH SRQKIRCSFLGSPCFCFNQVVRRRDIALKIKEVRKKVDDIAKERAKYGFDLYKTTDELQRLTTTSFVDESSVIGRDGEKRNVVSKLLAESSQEARDVDVI SLVGLGGIGKTTLAQLAFNDAEVTAHFEKKIWVCVSEPFDEVKIAKAILEELEGRASDLVGLQSLLRRVSESIEGKRFLLVLDDVWTENHGQWEQLKPSL TGCARGSRILVTTRKDAVATMMGSTGHRINIKELSDEICRSIFNHVAFQERSEDERERLTDIGDKIANKCKGLPLAAKVLGGLMQSKRTREEWDRVLSSE LWRLDEVDRDQVERRIFIPLLLSYYDLPSVVRRCFLYCAMFPKDYEMDKDELVKMWMAQGYLKETSGGDMELVGEQYFQVLAARSFFQDFETDEDEGMTF KMHDIVHDFAQYMTKNECLTVDVNTLGGATVETSIERVRHLSMMLPNETSFPVSIHKAKGLRSLLIDTRDPSLGAALPDLFKQLTCIRSLNLSRSQIKEI PNEVGKLIHLRHLNLAWCVELESLPETICDLCNLQSLDVTWCRSLKELPKAIGKLIKLRHLWIDSSGVAFIPKGIERITCLRTLDKFTVCGGGENESKAA NLRELKNLNHIGGSLRIDKVRDIENVRDVVDALLNKKRLLCLEWNFKGVDSILVKTELPEHEGSLIEVLRPPSDLENLTIRGYGGLDLPNWMMTLTRLRM LSLGPCENVEVLPPLGRLPNLERLLLFFLKVRRLDAGFLGVEKDENEGEIARVTAFPKLKSFRIRYLEEIEEWDGIERRVGEEDANTTSIISIMPQLQYL GIRKCPLLRALPDYVLAAPLQELEIMGCPNLTNRYGEEEMGEDWQKISHIPNIYFHDI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14470			NB-ARC domain-containing disea...		Potri.012G123500 [exp]	0	1
AT3G14470			NB-ARC domain-containing disea...		Potri.012G122900 [exp]	1.41	0.8803
AT4G27220			NB-ARC domain-containing disea...		Potri.019G009198 [exp]	1.73	0.8120
AT3G14470			NB-ARC domain-containing disea...		Potri.012G121750 [exp]	4.47	0.8043
AT3G14470			NB-ARC domain-containing disea...		Potri.018G135700 [exp]	10.72	0.7793
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Potri.006G205600 [exp]	14.83	0.7541
AT5G36930			Disease resistance protein (TI...		Potri.006G282900 [exp]	21.49	0.7746
AT3G14460			LRR and NB-ARC domains-contain...		Potri.011G005700 [exp]	21.63	0.7224
AT5G36930			Disease resistance protein (TI...		Potri.011G012000 [exp]	24.10	0.7568
AT1G17665			unknown protein		Potri.003G038600 [exp]	25.74	0.7402
AT5G36930			Disease resistance protein (TI...		Potri.006G283800 [exp]	25.80	0.7295

Compare expression of checked genes

Potri.012G123500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.