Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-SKS1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25240 883 / 0 SKS1 SKU5 similar 1 (.1) AT5G51480 879 / 0 SKS2 SKU5 similar 2 (.1) AT4G12420 824 / 0 SKU5 Cupredoxin superfamily protein (.1.2) AT5G48450 697 / 0 SKS3 SKU5 similar 3 (.1) AT4G22010 518 / 1e-179 SKS4 SKU5 similar 4 (.1) AT1G21850 519 / 2e-179 SKS8 SKU5 similar 8 (.1) AT1G76160 514 / 1e-177 SKS5 SKU5 similar 5 (.1) AT4G38420 508 / 3e-175 SKS9 SKU5 similar 9 (.1) AT1G41830 504 / 8e-174 SKS6 SKU5 SIMILAR 6, SKU5-similar 6 (.1) AT1G21860 501 / 7e-173 SKS7 SKU5 similar 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G127200 [exp] 1081 / 0 AT4G25240 882 / 0.0 SKU5 similar 1 (.1) Potri.003G112700 [exp] 866 / 0 AT4G12420 932 / 0.0 Cupredoxin superfamily protein (.1.2) Potri.001G120300 [exp] 862 / 0 AT4G12420 930 / 0.0 Cupredoxin superfamily protein (.1.2) Potri.014G177700 [exp] 721 / 0 AT5G48450 885 / 0.0 SKU5 similar 3 (.1) Potri.002G227600 [exp] 530 / 0 AT1G76160 794 / 0.0 SKU5 similar 5 (.1) Potri.004G180500 [exp] 529 / 0 AT1G76160 880 / 0.0 SKU5 similar 5 (.1) Potri.014G154500 [exp] 528 / 0 AT4G22010 780 / 0.0 SKU5 similar 4 (.1) Potri.005G247700 [exp] 524 / 0 AT1G76160 878 / 0.0 SKU5 similar 5 (.1) Potri.002G021000 [exp] 523 / 0 AT1G75790 670 / 0.0 SKU5 similar 18 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031722 [exp] 923 / 0 AT4G25240 897 / 0.0 SKU5 similar 1 (.1) Lus10031143 [exp] 921 / 0 AT4G25240 898 / 0.0 SKU5 similar 1 (.1) Lus10038920 [exp] 880 / 0 AT5G51480 851 / 0.0 SKU5 similar 2 (.1) Lus10027207 [exp] 855 / 0 AT5G51480 840 / 0.0 SKU5 similar 2 (.1) Lus10032241 [exp] 821 / 0 AT4G12420 950 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10028921 [exp] 821 / 0 AT4G12420 975 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10004339 [exp] 819 / 0 AT4G12420 979 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10024604 [exp] 794 / 0 AT4G12420 941 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10025860 [exp] 718 / 0 AT5G48450 882 / 0.0 SKU5 similar 3 (.1) Lus10038239 [exp] 703 / 0 AT5G48450 858 / 0.0 SKU5 similar 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [poplar] [flax] CU_oxidase PF00394 [poplar] [flax] Cu-oxidase Multicopper oxidase CL0026 [poplar] [flax] CU_oxidase PF07731 [poplar] [flax] Cu-oxidase_2 Multicopper oxidase CL0026 [poplar] [flax] CU_oxidase PF07732 [poplar] [flax] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Potri.012G126400.1 pacid=42783409 polypeptide=Potri.012G126400.1.p locus=Potri.012G126400 ID=Potri.012G126400.1.v4.1 annot-version=v4.1 ATGGCCTTCTTTAAGTTCTCTTCAACATCCTTTTTTCTTTTGATTCACATTGCTCTGTTTTCAAGTTTCTCTCTTGCTGCAGACCCAACTGTCTATTATG ACTTTAAGCTATCTTACATCACTGTCTCTCCTCTTGGTGTTCCTCAAAAGGTTATAGCTATCAATGGACAGTTTCCTGGTCCTCTTGTTAATGCTACCAC TAACAATAATGTTGTTATAAAAGTATACAATGATTTGGATGAAGACCTTCTAATGACATGGCCTGGGATCCAAATGCGACGTAATTCATGGCAGGATGGT GTTCTGGGCACAAATTGTCCAATTCCTCCGACTTGGGACTTTAATTACACTTTTCAAGTAAAAGATCAGATTGGGAGCTTTTTCTACTTTCCGTCTCTTA ATCTTCAAAGAGCCTCGGGTGGCTTTGGTCCCTTTGTTATTAACAACAGGGCAGTTATCCAAATTCCTTTCGCTCAGCCGGATGGGGATTTTACCCTTCT GATTGGGGACTGGTATACAAGGAACCATACGGCATTGAGAGCTGATCTTGACTCTGGAAAAGACCTTGGAATGCCCGATGGAGTTTTAATTAACGGGAAA GGACCATACAGATACAACACAACTCTTGTACCTGACGGGTTGCCATATGAAACCATTAAAGTTGACCCAGGCAAGACTTATCGATTTCGTGTCCACAATG TTGGGACTTCAACTAGTTTGAACTTCAGAATCCAGGGACACAATCTGCTTCTTGTGGAAACAGAGGGTTATTACACTGTGCAACAAAATTATACTAGTTT TGATATTCATGTGGGGCAGTCTTCTTCCTTTTTGGTCACCATGGATCAGAATGCTACTAGTGATTACTACATCGTAGCAAGTGCTCGGTTTGTGAATGAA TCAATTTGGCGAAAAGTCTCTGGTGTTGGCATTTTACACTATTCCAATTCAAAAGGACCTGCTACTGGTCCTCTGCCTGAAGCACCAAGTGATATTTATA ACCAGTGGTCAGCCATGAACCAGCCAAAAGCCATCAGGCAAAATACATCTGCAAGTGGAGCTCGCCCAAATCCACAGGGGTCTTATCACTATGGTTCTAT CAATGTGACTGACACATATATTTTAAGGAGCTTGCCACCAACTACCATCGACGGGAAGCTGCGTGCAACTCTGAATGGGATATCATTTGTCAATCCGGGT ACACCAATCAGGCTTGCTGACCTTAACAAAGTGAAGGGATCTTACAAACTTGATTTTCCTAGTGCACCACTTAATAGAACTTTCCACAGGGACACTTCTG TAATTAATGCTACATACAAGGGGTTTACAGAAATCATATTGCAGAACAATGATACTAGAATGCAGAGCTTTCACATGAATGGTTACTCCTTTTTCGTTGT TGGGATGGACTGGGGCATTTGGTCAGAGAACAGCAGAGGTTCATACAATAAGTGGGATGCTATTTCTCGCAGCACAGTAGAGGTTTATCCTGGGGGATGG ACAGCAGTTCTCGCCTCCCTTGACAATGCTGGAGTATGGAATCTGAGAGTAGAAAATCTTGATAGATGGTATCTCGGCCAAGAAACATATATGAGAATAA TCAATCCTGAAGAAAATGGCGAAACAGAGATGCCCCCCCCTAATAATGTTTTATATTGTGGTGCCCTTGCTTCCAAACAGCAGGATTTAAGCCACAAATC AGGAGCATCGATTCTCCATGGCAATCCTAATCTGTTTTTCACTCTGCTGATGGCACTCTGCGCGGTTTTCATTTTCAGCTAA
AA sequence Show only first row Show all	>Potri.012G126400.1 pacid=42783409 polypeptide=Potri.012G126400.1.p locus=Potri.012G126400 ID=Potri.012G126400.1.v4.1 annot-version=v4.1 MAFFKFSSTSFFLLIHIALFSSFSLAADPTVYYDFKLSYITVSPLGVPQKVIAINGQFPGPLVNATTNNNVVIKVYNDLDEDLLMTWPGIQMRRNSWQDG VLGTNCPIPPTWDFNYTFQVKDQIGSFFYFPSLNLQRASGGFGPFVINNRAVIQIPFAQPDGDFTLLIGDWYTRNHTALRADLDSGKDLGMPDGVLINGK GPYRYNTTLVPDGLPYETIKVDPGKTYRFRVHNVGTSTSLNFRIQGHNLLLVETEGYYTVQQNYTSFDIHVGQSSSFLVTMDQNATSDYYIVASARFVNE SIWRKVSGVGILHYSNSKGPATGPLPEAPSDIYNQWSAMNQPKAIRQNTSASGARPNPQGSYHYGSINVTDTYILRSLPPTTIDGKLRATLNGISFVNPG TPIRLADLNKVKGSYKLDFPSAPLNRTFHRDTSVINATYKGFTEIILQNNDTRMQSFHMNGYSFFVVGMDWGIWSENSRGSYNKWDAISRSTVEVYPGGW TAVLASLDNAGVWNLRVENLDRWYLGQETYMRIINPEENGETEMPPPNNVLYCGALASKQQDLSHKSGASILHGNPNLFFTLLMALCAVFIFS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G25240		SKS1	SKU5 similar 1 (.1)		Potri.012G126400 [exp]	0	1	Pt-SKS1.2
AT1G76160		SKS5	SKU5 similar 5 (.1)		Potri.004G180500 [exp]	2.44	0.6376
AT4G32880	HD	ATHB8, ATHB-8	homeobox gene 8 (.1)		Potri.018G045100 [exp]	2.64	0.6740	HB1.5
AT4G38350			Patched family protein (.1.2)		Potri.005G251800 [exp]	28.37	0.5482
AT1G63640			P-loop nucleoside triphosphate...		Potri.001G104000 [exp]	34.64	0.6130
AT1G08290	C2H2ZnF	WIP3	WIP domain protein 3 (.1)		Potri.009G143700 [exp]	44.47	0.5324
AT4G34200		EDA9	embryo sac development arrest ...		Potri.009G096600 [exp]	81.97	0.5393
AT3G16730		HEB2	hypersensitive to excess boron...		Potri.010G010480 [exp]	112.18	0.5196
AT5G50010	bHLH		sequence-specific DNA binding ...		Potri.005G158100 [exp]	126.47	0.5043
AT1G62360	HD	WAM1, WAM, SHL,...	WALDMEISTER 1, WALDMEISTER, SH...		Potri.004G004700 [exp]	157.57	0.4926	STM.2
AT1G06590			unknown protein		Potri.004G081200 [exp]	161.93	0.5064

Compare expression of checked genes

Potri.012G126400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.