Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 640 / 0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G17680 503 / 5e-158 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G27170 497 / 5e-155 transmembrane receptors;ATP binding (.1.2) AT1G27180 446 / 6e-135 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G41750 431 / 2e-133 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G49140 429 / 2e-133 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G12010 424 / 1e-129 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G18360 412 / 8e-128 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G44510 415 / 3e-126 TAO1 target of AVRB operation1 (.1) AT2G16870 413 / 4e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G037599 [exp] 1473 / 0 AT5G36930 627 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G004599 [exp] 979 / 0 AT5G36930 627 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G007884 [exp] 916 / 0 AT5G36930 654 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T011750 [exp] 913 / 0 AT5G36930 551 / 2e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003285 [exp] 898 / 0 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T005501 [exp] 897 / 0 AT5G36930 612 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002400 [exp] 879 / 0 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003942 [exp] 871 / 0 AT5G36930 591 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.003G014200 [exp] 868 / 0 AT5G36930 673 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005171 [exp] 692 / 0 AT1G27170 576 / 0.0 transmembrane receptors;ATP binding (.1.2) Lus10011741 [exp] 637 / 0 AT5G36930 540 / 4e-172 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10018616 [exp] 608 / 0 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10039850 [exp] 607 / 0 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10011104 [exp] 540 / 6e-173 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10029722 [exp] 530 / 2e-170 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10041060 [exp] 519 / 2e-164 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10019708 [exp] 476 / 9e-146 AT5G17680 495 / 1e-150 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10003749 [exp] 459 / 1e-141 AT5G17680 517 / 5e-161 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10001375 [exp] 445 / 3e-135 AT5G36930 464 / 3e-141 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain CL0173 [poplar] [flax] STIR PF13676 [poplar] [flax] TIR_2 TIR domain
Representative CDS sequence Show only first row Show all	>Potri.012G135700.2 pacid=42783138 polypeptide=Potri.012G135700.2.p locus=Potri.012G135700 ID=Potri.012G135700.2.v4.1 annot-version=v4.1 ATGTTCCCGTTTTTACTTGAGTTCAATTATTCTCCTGCTCCTCCTTCTTCTTTCTCTAGACCTGGATGGGGTTATGATGTGTTTCTAAGTTTTAGAGGTG AAGACACTCGCAAGAATTTTACGGATCATCTTTACACTGCTTTACTCCAAGCAGGAATCCGTACATTTCGAGATGATGACGAACTTCTTAGAGGAGAAAA AATCTCCTCACAACTCCCCAAAGCAATTCAAGAATCCAAGGTTTCTATAGTGGTTTTCTCTAAGGGCTATGCTTCCTCCACTTGGTGTCTTGATGAACTT GAAGAAATTCTTGATTGCAGACATACAACTGGCCAGATTGTTCTACCAGTTTTCTATGATATCGGTCCTTCTGATATTAGAAAACAGACGGGAAGCTTTG CTGAAGCCTTTGATAGACATGAGGAACGTTTTAAGGAAGAAATGGAGAAGGTCCAAAAGTGGAGAAAAGCTCTTGTGGAGGCTGCAAATTTATCTGGGTT GGATCTTCACAGTGTTGCAAATGGGCATGAATCAAAATTCGTTCAAAAGATTGTCCAAGAAGTTTCAAGTAAATTGAATCCCAGATACATGAATGTTGCC ACATATCCGGTAGGTATTGATTCTCAAGTCAAAGATATCATTGCCATGTTAAGTGTTGGTACAAATGAAGTTCGAACTGTGGGAATCTATGGGATGCCAG GAATAGGCAAGACAGCCATAGCAAAAGCTGTTTTTAACCAGCTTTGTCATAAATTTGAAGGAAGTTGTTTCCTTTTGAATATCAGAAAAAGCTCAGATCA ACACAACGGTCTAGTTCAATTACAGGAACAGCTTCTTTTTGATTCTTTAACGGGAAAGATTTGGTTTGCTGATGTTGATGCAGGAATCAATGGCATCAAA AGCCAATTTTGTCGTAAAAGGGTACTTGTTATTCTTGACGACTTTGATCAATCGGAACAAATACATGCGTTGGTAGGAGAGCGAGGCTGGTTTGGTCCTG GAAGTAGAATAGTAATTACAACTAGAGATGAACATTTACTCACACAACTTGAAGTGGTAAAAAAATATCCCGCTAAAGAATTGAACCATGAAGAGTCTCT TCAACTTTTCAGTTGGCATGCCTTTAGGGAGCCCCATCCAGTGACAGAATATGTTGAGCTGTCTAAAGTTTTAGTTGATTATGTTGGTGGAGTTCCATTG GCTCTTGAAGTCGTAGGTTCTTACTTGTTTAGAAGAAGCATCCCTCAGTGGACAAGTGCTATAGAGAAATTGAAAAAAATTCCTCACCACCAGATTCAGA GGCAACTTAAAACAAGTTTTGATGATTTGGATGGTGACAAACTGAAGGATATGTTCCTTGATATTGCGTGTTTCTTCATCGGTATGGATAAAGATTATGT GGGAAAAATACTCGATGGTCGTGGTTTTTATCCAGAAATAGATATTAATATTCTCAGGGAAAGATCCCTTTTAACAGTCAACAGTGAGAATAAGTTACAG ATGCATAATCTCTTACGAGACATGGGAAGGGAGATCATTCGTCAAATGGATCCAAATCCTGGAAAGCGTAGCAGACTTTGGCTTCACGAAGATGTAATGG AAGTGCTAGGAAAGTGTTCGGGAACAGAAGTAGTGGAGGGTATCATGCTAGACGCTCAAGCGTCAAAAGATGCATTTCTAAGCACTACATCATTTGCTCC AACGACATCTCAAGCATCAAAAGATGTAGTTGTAAGCACAACATCATTTGCACGAATGACGTCTTTACAGTTGCTCCAATTCAGTGGAGGACAACTCCGC GGACACTGCGAACATGTTTCCGAGGCATTGATATGGCTTTGCTGGCATAAATGCTCTATGCGAACTTTACCACACAAATTTCAACTTGACAGCCTAGTTG TTCTTGACATGCAGCACAGCGAAATCAGAGAGCTCTGGAAGGAGACCAAGTGTCTAAACAATCTGAAAGTCCTCGATCTCAGCCATTCTATGTTCTTCGT TAAAACACCGAACTTCTCTGGACTCCCTAGTTTGGAGACACTAATTCTAGAAAATTGCAAAAGATTAGCTGATATTCACCAATCTATTGGCGAATTGAAA AAACTTGTTTTCTTGAATTTAAAGGGATGTAGCAGCCTAAAGAATCTTCCAGAAAGCTTGCCTTCCACTCTTGAAACTCTGAACACCACGGGCTGCATCA GTCTTGAGAAATTTCCAGAGAACTTAGGTAATATGCAAGGCTTAATTGAAGTTCAAGCAAATGAAACTGAAGTTCATCATCTACCTTCTTCCATTGGAAA TTTGAAGAAGCTCAAAAAGTTATTTGTGTGTGGCTCTGGTTATGTTCTTGAGTCAGCCATGAGCTCAGAAAAGATTGTCCTCAAGCAACAACCTTTCCTG CCACTATCCTTCTCTGGTTTAAGCTCTTTGACAACGCTCCATGTTAGTAATCGCCATTTATCTAACAGTAATACTTCCATCAATCTTGGGAGTTTATCGT CTCTTCAGGATCTGAAACTGGCCAGCAACGATTTCTCTGAATTGCCTGCCGGCATTGGCCACCTCCCAAAGCTAGAGAAATTGGACCTGTCAGCCTGTAG AAATCTTCTATTTATCTCAGAGATCCCCTCGAGTTTAAGAACTTTGGTGGCACTTGATTGCATATCACTGGAAAAGGTGTCAATTCAGTCAAAGACAGCG CCGGATCTGTTACTGAGTCGCTGTGGAAAACTAGCTGAGATTCAAGGCTTGGAGAGTGTAGAAAACAAACCAGTCATTCGCATGGAAAACTGTAACAATT TGTCAAACAATTTTAAGGAGATTCTTCTTCAGGTTTTGTCCAAGGGAAAGCTTCCAGACATTGTTCTCCCGGGTAGCGATGTACCGCATTGGTTTATCCA ATATCAAAGAGATAGATCTTCCTCAACATTTCGTATACCAGCCATTTCAGTTGGTTTAATTCAAGGACTAATTGTTTGGACTGTCTATGCAGACACTGGT AAAGACAAGTTGTCCAGTTTTTCTTCTCTTTGTTCTGCTTCTATCAGAAAAAAGAACGATAATACTGAATTGTTTTATACACGACCATACTTTGGCATTT CTTCAAAAGATGAAGATCATTCTTGGGTGATCTATATCCCATTTAGCAGGATTCAAGGTACAATTGAAGGTGGAGACGAATTGGAAGTGTCTGTCAAACC TGGCAATGGTACTACTGTAAGGAAGTGTGGCGCGCATCTAATTTTTTGA
AA sequence Show only first row Show all	>Potri.012G135700.2 pacid=42783138 polypeptide=Potri.012G135700.2.p locus=Potri.012G135700 ID=Potri.012G135700.2.v4.1 annot-version=v4.1 MFPFLLEFNYSPAPPSSFSRPGWGYDVFLSFRGEDTRKNFTDHLYTALLQAGIRTFRDDDELLRGEKISSQLPKAIQESKVSIVVFSKGYASSTWCLDEL EEILDCRHTTGQIVLPVFYDIGPSDIRKQTGSFAEAFDRHEERFKEEMEKVQKWRKALVEAANLSGLDLHSVANGHESKFVQKIVQEVSSKLNPRYMNVA TYPVGIDSQVKDIIAMLSVGTNEVRTVGIYGMPGIGKTAIAKAVFNQLCHKFEGSCFLLNIRKSSDQHNGLVQLQEQLLFDSLTGKIWFADVDAGINGIK SQFCRKRVLVILDDFDQSEQIHALVGERGWFGPGSRIVITTRDEHLLTQLEVVKKYPAKELNHEESLQLFSWHAFREPHPVTEYVELSKVLVDYVGGVPL ALEVVGSYLFRRSIPQWTSAIEKLKKIPHHQIQRQLKTSFDDLDGDKLKDMFLDIACFFIGMDKDYVGKILDGRGFYPEIDINILRERSLLTVNSENKLQ MHNLLRDMGREIIRQMDPNPGKRSRLWLHEDVMEVLGKCSGTEVVEGIMLDAQASKDAFLSTTSFAPTTSQASKDVVVSTTSFARMTSLQLLQFSGGQLR GHCEHVSEALIWLCWHKCSMRTLPHKFQLDSLVVLDMQHSEIRELWKETKCLNNLKVLDLSHSMFFVKTPNFSGLPSLETLILENCKRLADIHQSIGELK KLVFLNLKGCSSLKNLPESLPSTLETLNTTGCISLEKFPENLGNMQGLIEVQANETEVHHLPSSIGNLKKLKKLFVCGSGYVLESAMSSEKIVLKQQPFL PLSFSGLSSLTTLHVSNRHLSNSNTSINLGSLSSLQDLKLASNDFSELPAGIGHLPKLEKLDLSACRNLLFISEIPSSLRTLVALDCISLEKVSIQSKTA PDLLLSRCGKLAEIQGLESVENKPVIRMENCNNLSNNFKEILLQVLSKGKLPDIVLPGSDVPHWFIQYQRDRSSSTFRIPAISVGLIQGLIVWTVYADTG KDKLSSFSSLCSASIRKKNDNTELFYTRPYFGISSKDEDHSWVIYIPFSRIQGTIEGGDELEVSVKPGNGTTVRKCGAHLIF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G36930			Disease resistance protein (TI...		Potri.012G135700 [exp]	0	1
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.016G012601 [exp]	4.24	0.8292
AT1G73660			protein tyrosine kinase family...		Potri.012G048400 [exp]	10.09	0.8032
AT5G45540			Protein of unknown function (D...		Potri.007G123100 [exp]	10.09	0.8395
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.010G154601 [exp]	11.22	0.7857
AT3G50140			Plant protein of unknown funct...		Potri.010G144200 [exp]	25.03	0.7324
AT5G54860			Major facilitator superfamily ...		Potri.011G137300 [exp]	31.74	0.7360
AT1G51340			MATE efflux family protein (.1...		Potri.016G053600 [exp]	32.72	0.7668
AT3G13690			Protein kinase protein with ad...		Potri.006G150100 [exp]	35.35	0.7805
					Potri.004G011801 [exp]	36.08	0.7711
AT2G18790		OOP1, HY3, PHYB	OUT OF PHASE 1, phytochrome B ...		Potri.010G145900 [exp]	37.76	0.7469

Compare expression of checked genes

Potri.012G135700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.