Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52260 187 / 3e-58 MYB ATMYB19 myb domain protein 19 (.1) AT4G25560 186 / 1e-57 MYB LAF1, ATMYB18 LONG AFTER FAR-RED LIGHT 1, myb domain protein 18 (.1) AT3G48920 176 / 9e-54 MYB ATMYB45 myb domain protein 45 (.1) AT1G57560 175 / 9e-53 MYB ATMYB50 myb domain protein 50 (.1) AT5G26660 176 / 1e-52 MYB ATMYB4, ATMYB86 myb domain protein 86 (.1) AT4G01680 171 / 2e-52 MYB ATMYB55 myb domain protein 55 (.1.2.3) AT1G09540 171 / 9e-51 MYB AtMYB61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) AT3G12720 167 / 9e-50 MYB ATMYB67, AtY53 myb domain protein 67 (.1) AT3G13890 167 / 2e-49 MYB ATMYB26, MS35 MALE STERILE 35, myb domain protein 26 (.1.2) AT1G63910 164 / 4e-48 MYB AtMYB103 myb domain protein 103 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G143400 [exp] 461 / 2e-165 AT4G25560 189 / 9e-59 LONG AFTER FAR-RED LIGHT 1, myb domain protein 18 (.1) Potri.003G155700 [exp] 172 / 1e-51 AT3G12720 240 / 1e-77 myb domain protein 67 (.1) Potri.008G081600 [exp] 172 / 2e-51 AT3G12720 262 / 2e-86 myb domain protein 67 (.1) Potri.013G001000 [exp] 174 / 4e-51 AT1G09540 382 / 1e-130 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) Potri.010G174500 [exp] 171 / 4e-51 AT3G12720 244 / 3e-79 myb domain protein 67 (.1) Potri.015G082700 [exp] 172 / 5e-51 AT1G57560 254 / 2e-82 myb domain protein 50 (.1) Potri.005G001600 [exp] 172 / 1e-50 AT1G09540 376 / 1e-128 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) Potri.009G053900 [exp] 169 / 2e-50 AT5G12870 224 / 8e-72 myb domain protein 46 (.1) Potri.012G084100 [exp] 170 / 3e-50 AT5G26660 253 / 1e-81 myb domain protein 86 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039213 [exp] 257 / 4e-85 AT4G25560 195 / 4e-61 LONG AFTER FAR-RED LIGHT 1, myb domain protein 18 (.1) Lus10027458 [exp] 253 / 3e-83 AT4G25560 190 / 4e-59 LONG AFTER FAR-RED LIGHT 1, myb domain protein 18 (.1) Lus10005739 [exp] 224 / 2e-72 AT5G52260 186 / 4e-58 myb domain protein 19 (.1) Lus10005740 [exp] 215 / 6e-69 AT5G52260 194 / 3e-61 myb domain protein 19 (.1) Lus10027456 [exp] 204 / 4e-64 AT5G52260 184 / 2e-56 myb domain protein 19 (.1) Lus10031281 [exp] 171 / 7e-51 AT3G08500 228 / 1e-72 myb domain protein 83 (.1) Lus10038395 [exp] 165 / 3e-49 AT3G12720 233 / 2e-75 myb domain protein 67 (.1) Lus10038022 [exp] 169 / 5e-49 AT4G01680 273 / 8e-90 myb domain protein 55 (.1.2.3) Lus10015608 [exp] 166 / 1e-48 AT3G13890 249 / 8e-80 MALE STERILE 35, myb domain protein 26 (.1.2) Lus10031850 [exp] 164 / 3e-48 AT3G08500 224 / 1e-70 myb domain protein 83 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.012G140500.1 pacid=42784353 polypeptide=Potri.012G140500.1.p locus=Potri.012G140500 ID=Potri.012G140500.1.v4.1 annot-version=v4.1 ATGGGGTGCAAATCATCAGACAAGCCAAAGCCAAAGCTAAGGCACAGGAAAGGCTTGTGGTCACCTGAAGAAGATCAAAGGCTTGGAAGCTATGTCTTTC AACATGGCCATGGATGTTGGAGCTCTGTCCCCATTAATGCTGGCTTGCAGAGGACTGGGAAGAGCTGCAGATTAAGATGGATTAATTACTTGAGACCAGG ACTGAAAAGAGGGGCGTTTTCTACAGACGAAGAAGAGACAATCCTGACCCTTCATCGCATGTTAGGCAACAAGTGGTCTCAAATTGCACAGCATTTGCCT GGAAGAACAGACAATGAGATAAAGAACCATTGGCATTCCTATTTGAAGAAAAAGTTGTTCAAAGCTGAAGGAATGGAATCTCCTAATAAGACTCAATCTG CCAGCTCAAACTCAGACAATATGGATCTTTCACCCTCTCCCAAAAGGCTTAAAATGCAAAGTCCTGAATCGTCAATGAATATGGAAAAACCATCAACTGA TATCGACCGGCCGGTACTTCCACGGATGTTTGACTATCTTAAAGAACCTAACAGAAGCTCCTTATTACCAAAGGTTATGTTTGCTGAGTGGCTCTCACTT GACAGCTTTGCAAGTTCAGGTGAGCCTGTGGTTTCAAAGAGTACATTCGATCATAATCCAAGCTTCCAAGACACTAGTTTCATGCATCATTACTTACTGG AAGAAGGAGCATTTGGTGGCGACTATCAAAATTCTCTAAGCGATGGTTCGAGCGGCGACATTTTTAGTTCAGAATTCAAATTTGAAAGCCAGAGTCCAGG AAATGAGTTTGATTTTAGCTCTGGAGAGGATTTATGTAGGGAATTCAACTTCCGTAATATTGGTGATGTGATGTACATATGA
AA sequence Show only first row Show all	>Potri.012G140500.1 pacid=42784353 polypeptide=Potri.012G140500.1.p locus=Potri.012G140500 ID=Potri.012G140500.1.v4.1 annot-version=v4.1 MGCKSSDKPKPKLRHRKGLWSPEEDQRLGSYVFQHGHGCWSSVPINAGLQRTGKSCRLRWINYLRPGLKRGAFSTDEEETILTLHRMLGNKWSQIAQHLP GRTDNEIKNHWHSYLKKKLFKAEGMESPNKTQSASSNSDNMDLSPSPKRLKMQSPESSMNMEKPSTDIDRPVLPRMFDYLKEPNRSSLLPKVMFAEWLSL DSFASSGEPVVSKSTFDHNPSFQDTSFMHHYLLEEGAFGGDYQNSLSDGSSGDIFSSEFKFESQSPGNEFDFSSGEDLCREFNFRNIGDVMYI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G52260	MYB	ATMYB19	myb domain protein 19 (.1)		Potri.012G140500 [exp]	0	1
AT1G80160		GLYI7	glyoxylase I 7, Lactoylglutath...		Potri.004G223300 [exp]	11.87	0.6981
AT1G13480			Protein of unknown function (D...		Potri.008G109500 [exp]	14.07	0.8081
					Potri.006G138450 [exp]	21.90	0.6718
AT1G72490			unknown protein		Potri.006G140100 [exp]	25.84	0.7998
					Potri.014G061500 [exp]	40.97	0.7258
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.014G037400 [exp]	57.82	0.6902
AT5G06710	HD	HAT14	homeobox from Arabidopsis thal...		Potri.018G133100 [exp]	71.10	0.7223
AT1G14590			Nucleotide-diphospho-sugar tra...		Potri.012G037300 [exp]	71.48	0.6973
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Potri.012G105600 [exp]	90.92	0.7357
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.019G014390 [exp]	104.87	0.7423

Compare expression of checked genes

Potri.012G140500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.