Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61250 276 / 1e-92 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) AT5G15310 222 / 6e-71 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2) AT3G01140 221 / 1e-69 MYB NOK, ATMYB106 NOECK, myb domain protein 106 (.1) AT4G21440 206 / 3e-64 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT1G34670 201 / 2e-62 MYB ATMYB93 myb domain protein 93 (.1) AT4G28110 198 / 4e-62 MYB ATMYB41 myb domain protein 41 (.1) AT1G08810 197 / 5e-62 MYB ATMYB60 myb domain protein 60 (.1.2) AT3G02940 199 / 6e-62 MYB ATMYB107 myb domain protein 107 (.1) AT5G10280 198 / 1e-61 MYB ATMYB92, AtMYB64 myb domain protein 92 (.1) AT5G16770 198 / 2e-61 MYB ATMYB9 myb domain protein 9 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G143500 [exp] 471 / 2e-169 AT3G61250 278 / 2e-93 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Potri.002G157600 [exp] 308 / 6e-105 AT3G61250 363 / 3e-126 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Potri.014G081200 [exp] 300 / 1e-101 AT3G61250 352 / 6e-122 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Potri.017G086300 [exp] 225 / 3e-71 AT5G15310 343 / 6e-117 myb domain protein 16 (.1.2) Potri.010G165700 [exp] 216 / 8e-68 AT3G01140 302 / 3e-100 NOECK, myb domain protein 106 (.1) Potri.004G033100 [exp] 211 / 8e-66 AT4G21440 293 / 4e-97 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.011G041600 [exp] 210 / 9e-66 AT4G21440 311 / 2e-104 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.008G089700 [exp] 207 / 2e-64 AT5G15310 291 / 1e-96 myb domain protein 16 (.1.2) Potri.005G164900 [exp] 206 / 2e-64 AT1G34670 309 / 7e-104 myb domain protein 93 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014784 [exp] 271 / 2e-90 AT3G61250 342 / 1e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10030378 [exp] 269 / 1e-89 AT3G61250 341 / 8e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10027459 [exp] 244 / 4e-80 AT3G61250 229 / 3e-74 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10039214 [exp] 232 / 2e-75 AT3G61250 226 / 7e-73 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10033003 [exp] 221 / 7e-70 AT5G15310 323 / 2e-109 myb domain protein 16 (.1.2) Lus10026620 [exp] 211 / 7e-67 AT3G01140 294 / 2e-98 NOECK, myb domain protein 106 (.1) Lus10041142 [exp] 197 / 2e-61 AT1G34670 315 / 2e-106 myb domain protein 93 (.1) Lus10036472 [exp] 197 / 3e-61 AT5G10280 307 / 1e-103 myb domain protein 92 (.1) Lus10009522 [exp] 196 / 4e-61 AT1G08810 284 / 9e-96 myb domain protein 60 (.1.2) Lus10033889 [exp] 196 / 7e-61 AT3G23250 239 / 1e-78 myb domain protein 15 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.012G140700.2 pacid=42783689 polypeptide=Potri.012G140700.2.p locus=Potri.012G140700 ID=Potri.012G140700.2.v4.1 annot-version=v4.1 ATGGGGAGGGTACCTTGTTGTGATAAAGATGAAGTAAAGAAAGGACCTTGGACTCCTGAAGAAGACCAACTCTTGGTTCAGTACATTCAAAAACATGGTC TTGGTTGCTGGCGTAGCCTCCCTAAGAACGCAGGCCTCCTTCGATGTGGGAAGAGCTGTCGGCTTCGGTGGACTAACTATCTTCGCCCTGACATTAAACG TGGTCCCTTCTCTCCTGCAGAAGAGGCTACTATTGTTCATCTTCATGGCATGCTCGGTAACAAGTGGGCATACATGGCATCTCAATTACCAGGAAGAACA GACAATGAGATAAAAAACTTCTGGAACACCCACCTGAAGAAGCGCCTAACTTCTATTGGTCCAAAGTTGCAGATCAACCAGTCATCCTCCTCTTCTGAAC CTATCAATATCAAGTGCAAATCTCCTTCAGCACGCCACATGGTACAATGGGAGAGTGCTAGAGTTGAGGCTGAGGCCCGTTTGTCAAAGCAGTCATTGCT TATTAAACCAACATCAACAGCTAAGAGCCGTCCTGATATCTTTCTCCAATTATGGAAATCTGAAGTTGGAGAAACATTTCGCATTACTGAGGAAAAATAT GGAAAAACATGTGAAAGTCTTGTATCTGACACACCTCCATCGATAAAAAATGAATCTGTTTTCCTCGACGACACGGTTTCACCAAAGCCTTTCAAAACAA CTACCTTCATGGACACCACGCAGGAACAAGAAGATACTTGCAAGCCAAATGAAGATGTGATGACTGTTTCAGATTCCATTGGTTCCAATGAATTTGCTGA TTCTACAGATACAGCATTGAAACTACTGTTAGATTTCCCAGGAGGCAATGATATGGAATTCATAGGGGAAGAATCAGAGTTTTTTCAACTTCCTTGA
AA sequence Show only first row Show all	>Potri.012G140700.2 pacid=42783689 polypeptide=Potri.012G140700.2.p locus=Potri.012G140700 ID=Potri.012G140700.2.v4.1 annot-version=v4.1 MGRVPCCDKDEVKKGPWTPEEDQLLVQYIQKHGLGCWRSLPKNAGLLRCGKSCRLRWTNYLRPDIKRGPFSPAEEATIVHLHGMLGNKWAYMASQLPGRT DNEIKNFWNTHLKKRLTSIGPKLQINQSSSSSEPINIKCKSPSARHMVQWESARVEAEARLSKQSLLIKPTSTAKSRPDIFLQLWKSEVGETFRITEEKY GKTCESLVSDTPPSIKNESVFLDDTVSPKPFKTTTFMDTTQEQEDTCKPNEDVMTVSDSIGSNEFADSTDTALKLLLDFPGGNDMEFIGEESEFFQLP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G61250	MYB	LMI2, ATMYB17	LATE MERISTEM IDENTITY2, myb d...		Potri.012G140700 [exp]	0	1
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Potri.001G004700 [exp]	1.73	0.8988
AT4G05430			Carbohydrate-binding X8 domain...		Potri.007G111000 [exp]	6.70	0.8757
AT1G11925			Stigma-specific Stig1 family p...		Potri.004G030900 [exp]	7.74	0.8569
AT4G02380		SAG21, ATLEA5	Arabidopsis thaliana late embr...		Potri.003G072000 [exp]	11.13	0.8807
AT5G43080		CYCA3;1	Cyclin A3;1 (.1)		Potri.008G008476 [exp]	11.48	0.7953
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.015G027700 [exp]	14.49	0.7991
AT3G62100	AUX_IAA	IAA30	indole-3-acetic acid inducible...		Potri.014G111700 [exp]	14.59	0.7562	Pt-IAA4.2
AT1G67540			unknown protein		Potri.010G057800 [exp]	16.58	0.8680
					Potri.001G233550 [exp]	17.66	0.8195
					Potri.003G217500 [exp]	20.29	0.8682

Compare expression of checked genes

Potri.012G140700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.