Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09540 382 / 1e-130 MYB AtMYB61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) AT4G01680 270 / 3e-87 MYB ATMYB55 myb domain protein 55 (.1.2.3) AT1G57560 266 / 4e-86 MYB ATMYB50 myb domain protein 50 (.1) AT5G26660 260 / 3e-83 MYB ATMYB4, ATMYB86 myb domain protein 86 (.1) AT3G12720 215 / 1e-66 MYB ATMYB67, AtY53 myb domain protein 67 (.1) AT3G13890 214 / 2e-65 MYB ATMYB26, MS35 MALE STERILE 35, myb domain protein 26 (.1.2) AT1G63910 206 / 2e-62 MYB AtMYB103 myb domain protein 103 (.1) AT2G16720 201 / 1e-61 MYB AtY49, AtMYB7 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) AT1G22640 200 / 3e-61 MYB AtMYB3 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) AT3G61250 196 / 3e-59 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G001600 [exp] 751 / 0 AT1G09540 376 / 1e-128 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) Potri.014G111200 [exp] 437 / 4e-151 AT4G01680 282 / 3e-93 myb domain protein 55 (.1.2.3) Potri.002G185900 [exp] 429 / 7e-148 AT1G09540 291 / 5e-95 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) Potri.010G004300 [exp] 285 / 7e-93 AT1G57560 247 / 4e-80 myb domain protein 50 (.1) Potri.012G084100 [exp] 255 / 4e-81 AT5G26660 253 / 1e-81 myb domain protein 86 (.1) Potri.015G082700 [exp] 253 / 3e-80 AT1G57560 254 / 2e-82 myb domain protein 50 (.1) Potri.003G155700 [exp] 220 / 4e-68 AT3G12720 240 / 1e-77 myb domain protein 67 (.1) Potri.008G081600 [exp] 218 / 3e-67 AT3G12720 262 / 2e-86 myb domain protein 67 (.1) Potri.001G197000 [exp] 215 / 8e-66 AT3G13890 256 / 1e-82 MALE STERILE 35, myb domain protein 26 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038022 [exp] 310 / 2e-101 AT4G01680 273 / 8e-90 myb domain protein 55 (.1.2.3) Lus10015608 [exp] 216 / 5e-66 AT3G13890 249 / 8e-80 MALE STERILE 35, myb domain protein 26 (.1.2) Lus10038395 [exp] 207 / 1e-63 AT3G12720 233 / 2e-75 myb domain protein 67 (.1) Lus10001226 [exp] 207 / 2e-63 AT3G12720 231 / 8e-75 myb domain protein 67 (.1) Lus10032117 [exp] 198 / 3e-60 AT5G14340 244 / 9e-81 myb domain protein 40 (.1) Lus10024669 [exp] 204 / 6e-60 AT1G63910 260 / 2e-82 myb domain protein 103 (.1) Lus10027197 [exp] 195 / 8e-60 AT1G66230 249 / 6e-83 myb domain protein 20 (.1) Lus10016948 [exp] 196 / 2e-59 AT4G09460 301 / 1e-103 myb domain protein 6 (.1) Lus10000411 [exp] 196 / 3e-59 AT4G09460 300 / 5e-103 myb domain protein 6 (.1) Lus10002296 [exp] 198 / 4e-59 AT1G66230 263 / 1e-86 myb domain protein 20 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.013G001000.1 pacid=42811102 polypeptide=Potri.013G001000.1.p locus=Potri.013G001000 ID=Potri.013G001000.1.v4.1 annot-version=v4.1 ATGGGGCGGCATTCTTGCTGTTACAAGCAGAAGTTAAGAAAAGGCCTGTGGTCTCCTGAGGAAGATGAGAAACTTCTTAATTATATTACTAAGCATGGAC TTGGTTGTTGGAGCTCTGTCCCTAAACTGGCAGGTTTGCAGAGATGTGGTAAGAGCTGCAGGTTAAGGTGGATTAACTACTTGAGGCCTGATTTGAAGAG AGGAGCATTTTCTCAGCAGGAAGAGAACTTGATTATTGAACTCCATGCAGTTCTTGGCAATAGATGGTCTCAGATTGCAGCACAGTTACCTGGAAGAACT GATAATGAGATAAAGAATTTATGGAATTCCTGCATTAAGAAGAAACTGAGGCAGAGAGGCATTGACCCCAACACTCACAAATCACTTTCTGAAGCTGAGG ATGGTAAAGGGAAGCAGCAGCTCACAGCTGACAAAAGCAATGAGAAAGTTTCTATTGTATCAAATGAACTGAACCTCATTAAGACAGCTACTTTAAAACC ACCTGCAGTTTCTTCCAGAAGCTCAAACGTCATCACCACCAACAACAATAAGGACAGAAGTGGTAGTAGCAACTTGACAAATGTTCCACCGACACAGGAA TTCTTCCTCGACAGGTTTGGTACCTCCCATGAAAGCTCCACCACGGCCAGTTGCATGCCTTCTGATTTGATGGATTATTTCCCTTTCCAGAAATTGGATT ACAAACCTATTATAGACCTCTCAATGAATCCAAACTCCACTCTCTGCTTTAATCCAAATTCCTCCTCTTCTGAGATGATTTCTCATGAGTTCAATTCTAG TATGACACCTCCGACTATTCTCCCATCCGTGTCAACCTCTATGTTCCAGACTCCAATATGTGTAAAACCTTCTGTTAGTCTTCCATCTGATCATAATCCT TCTGTAGGCTCTTGTGATGTCAATGGGGTTCAGAACTGGGAAGCAAGTAGCTTCAGCAACAACGGAAGTGGAAGCAATGGAAGCAGTAGCAGTATTGAAT TGCAAAGCAACACCAATTTCTTTGAGAGCAGCGCCTTCTCGTGGGGTTTAGCTGATTGTGGGAAATCCAGCGACGAAGCTCACCTTCGATCTCTCGCAAA CGAGACGGTTGAAGACATCAAATGGTCTGAATACCTTAGCACCCCATTCTTTCTTGGAAGCACAATACAAAACCAAACATCTCAACATGTGTACAGTGAA GTGAAACCTGAAACACACTTCATAGCACAAGGGTCAAGTACTAGTTGGCTAAAGAATCAACATCAACAAGCTTCACAGCCAGCAGACATCTATACCAAGG ATCTGCAAAGACTTGCTGTGGCTTTTGGTCAATCCATATAG
AA sequence Show only first row Show all	>Potri.013G001000.1 pacid=42811102 polypeptide=Potri.013G001000.1.p locus=Potri.013G001000 ID=Potri.013G001000.1.v4.1 annot-version=v4.1 MGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGLGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENLIIELHAVLGNRWSQIAAQLPGRT DNEIKNLWNSCIKKKLRQRGIDPNTHKSLSEAEDGKGKQQLTADKSNEKVSIVSNELNLIKTATLKPPAVSSRSSNVITTNNNKDRSGSSNLTNVPPTQE FFLDRFGTSHESSTTASCMPSDLMDYFPFQKLDYKPIIDLSMNPNSTLCFNPNSSSSEMISHEFNSSMTPPTILPSVSTSMFQTPICVKPSVSLPSDHNP SVGSCDVNGVQNWEASSFSNNGSGSNGSSSSIELQSNTNFFESSAFSWGLADCGKSSDEAHLRSLANETVEDIKWSEYLSTPFFLGSTIQNQTSQHVYSE VKPETHFIAQGSSTSWLKNQHQQASQPADIYTKDLQRLAVAFGQSI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09540	MYB	AtMYB61	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.013G001000 [exp]	0	1
AT5G01890			Leucine-rich receptor-like pro...		Potri.006G108600 [exp]	1.00	0.9599
AT1G32860			Glycosyl hydrolase superfamily...		Potri.001G449100 [exp]	4.24	0.9290
AT3G44610			Protein kinase superfamily pro...		Potri.010G236200 [exp]	4.24	0.9442
AT3G56810			unknown protein		Potri.006G026600 [exp]	5.29	0.9336
AT3G53380			Concanavalin A-like lectin pro...		Potri.006G130000 [exp]	5.38	0.9073
AT1G09540	MYB	AtMYB61	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.005G001600 [exp]	6.70	0.9231	MYB61.2
AT5G19530		ACL5	ACAULIS 5, S-adenosyl-L-methio...		Potri.008G151800 [exp]	7.00	0.9243
AT5G61480		PXY, TDR	TDIF receptor, PHLOEM INTERCAL...		Potri.001G126100 [exp]	8.48	0.9233
AT3G18200			nodulin MtN21 /EamA-like trans...		Potri.015G042900 [exp]	10.09	0.9122
AT5G66920		SKS17	SKU5 similar 17 (.1)		Potri.007G038300 [exp]	10.72	0.9332

Compare expression of checked genes

Potri.013G001000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.