Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63020 539 / 4e-179 Disease resistance protein (CC-NBS-LRR class) family (.1) AT4G10780 495 / 5e-162 LRR and NB-ARC domains-containing disease resistance protein (.1) AT5G05400 493 / 1e-161 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G12220 486 / 9e-159 RPS5 RESISTANT TO P. SYRINGAE 5, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G12280 472 / 3e-153 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G12210 469 / 4e-152 RFL1 RPS5-like 1 (.1) AT1G63350 466 / 6e-151 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G12290 466 / 7e-151 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G61310 463 / 2e-149 LRR and NB-ARC domains-containing disease resistance protein (.1) AT5G47260 463 / 3e-149 ATP binding;GTP binding;nucleotide binding;nucleoside-triphosphatases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G313300 [exp] 671 / 0 AT5G63020 659 / 0.0 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.006G147100 [exp] 451 / 1e-145 AT4G26090 775 / 0.0 RESISTANT TO P. SYRINGAE 2, NB-ARC domain-containing disease resistance protein (.1) Potri.018G145566 [exp] 292 / 5e-85 AT4G27220 348 / 7e-105 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014338 [exp] 294 / 1e-84 AT4G27220 342 / 2e-101 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014322 [exp] 291 / 4e-83 AT4G27220 319 / 3e-92 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014380 [exp] 286 / 5e-82 AT4G27220 302 / 5e-87 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014356 [exp] 287 / 1e-81 AT4G27220 219 / 2e-58 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014308 [exp] 285 / 2e-81 AT4G27220 326 / 1e-95 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014340 [exp] 286 / 3e-81 AT4G27220 341 / 1e-99 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018937 [exp] 144 / 5e-35 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10028639 [exp] 135 / 2e-32 AT3G07040 579 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10014922 [exp] 134 / 5e-32 AT3G07040 523 / 1e-171 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10020016 [exp] 127 / 9e-30 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10039540 [exp] 127 / 1e-29 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 121 / 8e-28 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10022792 [exp] 121 / 1e-27 AT3G14470 343 / 7e-102 NB-ARC domain-containing disease resistance protein (.1) Lus10041243 [exp] 115 / 7e-26 AT3G07040 526 / 1e-172 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10005321 [exp] 109 / 4e-24 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026109 [exp] 109 / 6e-24 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.013G007400.1 pacid=42811561 polypeptide=Potri.013G007402.1.p locus=Potri.013G007400 ID=Potri.013G007400.1.v4.1 annot-version=v4.1 ATGGCCAATATTCCTATAGGAGAAGTGCTTACCTTCTTGTGGAATGTGATTAAAGAACCTGTGGTTTATATTGATTACGAGCAAAATCTGCGCATCTTGG AAACTAAGATGGATGAGCTGCTGCATCTGAAGAACGACCTGACAGGGAAAGTGCAGATGGCTGAGGTGCGAAGCATGACATCTCGAGTGACAGGGTGGGT TTCAAGGGTTGAACGTATGATAACTGAAGTTAATGAATTGACGAATCAAGCCGCACAAGAGATGCAGAAGAACTGCTTTGGAAGCTGCTGTCCTAAGAAT TGCTGGTCCAGGTACAAGATAGGGAAGAAAATTGATGAGAAGTTGAGAGCTGTTTCTGATCATATTGAAAAAGGTGAGAAGTACTTGAGCTCGGTGTCTT CTCCTGTTGAATCAGTTATGGGGTGCCTATGTGAAGTAGGGAAGTCAACTATTGGCATATATGGACCAGGAGGTGTAGGCAAGACTGCTCTCTTGACTCA AGTCAGCAATAACTTGCTCAGCTCACAGCTCCCATTTGATTTCGTTATATGGGTGGTGGCATCCCAGGATCCTGACTCTGAAAGAATCCAAGGTGATATT GGTAAGGAAATAGGATTTCTTGAAGATAGATGGAAGGGTAAAAGTTTTCAAGAGAAAGCTAGGGAGGTCTCTTCTGTTCTGAGCCAAAAGAAGTTTGTGT TGTTGGTGGATGATTTGTGGAAGCCAGTTGATCTAGCTGAAGTTGGAGTTCCTTCTAGAGAAAATGGCTCCAAGCTAGTATTCACCACTAGTTCAGAGGA GTTGTGCAACAGTATGGGCGCGGAAGAGAAGATTCGAGTGGGCGGTTTGGCATGGGAGAAAGCTTGGAAATTGTTTCAAGAGAAGGTTGGCGAAGACACA CTTAAAATTCATCCGGACATTCCTGAGCTGGCAGAAACTATTGCCAAAATGTGTAATGGGCTACCACTTGCACTTATAACTGTTGGCCGGGCAATGGCTT TCAGAAAGACCCTCTTGGAATGGCGCCATTCCATCGAGGCCTTGAGCAGGGCCACAGCAGAATTTTCACGCACTCCCTGTCGGGACTTTGTTCTGCTGAA GTTTGGCTACGATAGTCTTCGAAATGACAAGGTTAGATCTTGTTTTTTGTATTGTGCTTTGTTCCCAGAAGGCTTTTTCATAAATAAGTCATACCTGATA GATTACTGGATTGGGGAGGGATTCTTGGGTGCATATAGTGATGCCTACGAGGCTAGAACTGAAGGTCACAACATCATTGACATTCTTACACAAGCATGCT TACTGGAAGATGAAGGCAGAGATGTGAAAATGCATCAAGTGATTCGCGATATGGCTCTGTGGATGGATAGCAGGAAGGAGAACCCAGTATATTTGGTCGA GGCCGGGACTCAGTTAGCCGATGCACCAGAGGTTGGAAAATGGGAAGTGGTGAGAAGGGTGTCTCTGATGGCTAACAACATTCAGAATCTATCAAAAGCA CCTAGATGCAATGATCTGGTAACTTTGTTTCTTAAAAAAAATAATTTGAAGATGATTAGTGATACTTTCTTTCAATTCATGCTTTCTCTGAAAGTCCTGG ACCTGTCCGAAAATAGAGAAATAACTGAATTTCCGTCAGGAATTTTGAAATTAGTTTCTCTACAGTATCTGAATCTATCAAGGACAGGAATAAGGCAGCT GCCAGTTCAGCTGAAGAACTTGGTGAAGCTGAAATGTTTGAACTTGGAGCATACTTATGAACTCCGCACGATTCCAATGCAAGTGATATCTAACTTCTCA AGCTTGACAGTATTGAGAATGTTTCATTGCGCTTCTTCTGATAGTGTTGTCGGAGATGGTGTCCAGACTGGTGGACCCGGATCCTTGGCAAGGGATTTGC AGTGCCTGGAGCATTTGAATCTGTTGACGATCACCATAAGAAGCCAGTATTCTCTGCAAACATTTGCAAGCTTCAACAAGTTCCTGACCGCCACCCAAGC ACTGTCCCTCCAAAAATTTCATCATGCGAGGTCACTTGACATATCACTTCTCGAAGGTATGAACTCTCTAGATGACCTTGAGTTAATTGACTGCAGTAAC CTGAAAGACCTGAGCATCAACAACTCCTCGATCACGAGGGAAACAAGCTTCAACAGCCTCCGCCGAGTGTCTATAGTCAACTGTACAAAATTGGAGGACT TGGCATGGCTAACTCTTGCTCCAAACATCAAGTTTCTCACGATATCAAGATGTTCTAAAATGGAAGAGATCATTCGACAAGAGAAATCGGGTCAAAGGAA TCTCAAAGTGTTCGAAGAACTCGAATTTCTTCGGTTAGTTTCCCTGCCAAAATTGAAGGTTATCTATCCTGACGCCCTGCCTTTTCCATCTCTGAAGGAA ATCTTTGTTGATGATTGCCCCAATCTGAGGAAGCTTCCCCTTAATTCTAACAGTGCGAAGGAACATAGAATTGTCATTCAGGGATGGGAAGATTGGTGGA GAAGGCTAGAATGGGAGGATGAAGCTGCTCAACATACCTTCCTTCACTCTTTCAAAGGCTGCTTGTACTAA
AA sequence Show only first row Show all	>Potri.013G007400.1 pacid=42811561 polypeptide=Potri.013G007402.1.p locus=Potri.013G007400 ID=Potri.013G007400.1.v4.1 annot-version=v4.1 MANIPIGEVLTFLWNVIKEPVVYIDYEQNLRILETKMDELLHLKNDLTGKVQMAEVRSMTSRVTGWVSRVERMITEVNELTNQAAQEMQKNCFGSCCPKN CWSRYKIGKKIDEKLRAVSDHIEKGEKYLSSVSSPVESVMGCLCEVGKSTIGIYGPGGVGKTALLTQVSNNLLSSQLPFDFVIWVVASQDPDSERIQGDI GKEIGFLEDRWKGKSFQEKAREVSSVLSQKKFVLLVDDLWKPVDLAEVGVPSRENGSKLVFTTSSEELCNSMGAEEKIRVGGLAWEKAWKLFQEKVGEDT LKIHPDIPELAETIAKMCNGLPLALITVGRAMAFRKTLLEWRHSIEALSRATAEFSRTPCRDFVLLKFGYDSLRNDKVRSCFLYCALFPEGFFINKSYLI DYWIGEGFLGAYSDAYEARTEGHNIIDILTQACLLEDEGRDVKMHQVIRDMALWMDSRKENPVYLVEAGTQLADAPEVGKWEVVRRVSLMANNIQNLSKA PRCNDLVTLFLKKNNLKMISDTFFQFMLSLKVLDLSENREITEFPSGILKLVSLQYLNLSRTGIRQLPVQLKNLVKLKCLNLEHTYELRTIPMQVISNFS SLTVLRMFHCASSDSVVGDGVQTGGPGSLARDLQCLEHLNLLTITIRSQYSLQTFASFNKFLTATQALSLQKFHHARSLDISLLEGMNSLDDLELIDCSN LKDLSINNSSITRETSFNSLRRVSIVNCTKLEDLAWLTLAPNIKFLTISRCSKMEEIIRQEKSGQRNLKVFEELEFLRLVSLPKLKVIYPDALPFPSLKE IFVDDCPNLRKLPLNSNSAKEHRIVIQGWEDWWRRLEWEDEAAQHTFLHSFKGCLY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G63020			Disease resistance protein (CC...		Potri.013G007400 [exp]	0	1
AT4G01950		ATGPAT3, GPAT3	glycerol-3-phosphate acyltrans...		Potri.002G192600 [exp]	7.34	0.9692
AT4G31980			unknown protein		Potri.003G206201 [exp]	20.97	0.9600
AT1G78980		SRF5	STRUBBELIG-receptor family 5 (...		Potri.014G001200 [exp]	22.36	0.9628
AT4G20970	bHLH	bHLH162	basic helix-loop-helix (bHLH) ...		Potri.004G044400 [exp]	23.32	0.9515
AT5G63520			unknown protein		Potri.012G100600 [exp]	24.24	0.9607
AT3G14470			NB-ARC domain-containing disea...		Potri.006G275800 [exp]	35.87	0.9581
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Potri.019G004500 [exp]	36.78	0.9599	QLEG.3
					Potri.001G320601 [exp]	39.94	0.9486
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.004G179400 [exp]	43.05	0.9547
AT5G26810			Pectin lyase-like superfamily ...		Potri.013G008100 [exp]	43.16	0.9421

Compare expression of checked genes

Potri.013G007400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.