Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-LON_ARA_ARA.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26860 1467 / 0 LON1, LON_ARA_ARA lon protease 1 (.1) AT3G05790 1293 / 0 LON4 lon protease 4 (.1) AT3G05780 1176 / 0 LON3 lon protease 3 (.1) AT5G47040 335 / 3e-100 LON2 lon protease 2 (.1) AT1G07190 50 / 9e-08 unknown protein AT5G64580 49 / 2e-05 EMB3144 EMBRYO DEFECTIVE 3144, AAA-type ATPase family protein (.1) AT4G24710 47 / 6e-05 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G16290 45 / 0.0003 EMB2083 embryo defective 2083, AAA-type ATPase family protein (.1) AT3G27120 44 / 0.0008 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G80350 44 / 0.0008 FTR, FRC2, FRA2, BOT1, ATKTN1, AAA1, LUE1, ERH3, MAD5 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G017600 [exp] 1797 / 0 AT5G26860 1428 / 0.0 lon protease 1 (.1) Potri.003G086000 [exp] 469 / 3e-150 AT5G47040 1461 / 0.0 lon protease 2 (.1) Potri.001G148400 [exp] 338 / 4e-101 AT5G47040 1460 / 0.0 lon protease 2 (.1) Potri.005G014500 [exp] 108 / 1e-23 AT1G09820 696 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G059700 [exp] 50 / 9e-06 AT5G64580 1349 / 0.0 EMBRYO DEFECTIVE 3144, AAA-type ATPase family protein (.1) Potri.014G133000 [exp] 46 / 0.0001 AT1G03000 1165 / 0.0 peroxin 6 (.1) Potri.003G050600 [exp] 45 / 0.0003 AT3G16290 1159 / 0.0 embryo defective 2083, AAA-type ATPase family protein (.1) Potri.015G084900 [exp] 45 / 0.0003 AT4G24710 694 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.012G086400 [exp] 44 / 0.0008 AT4G24710 712 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031414 [exp] 1499 / 0 AT5G26860 1402 / 0.0 lon protease 1 (.1) Lus10010919 [exp] 1391 / 0 AT5G26860 1275 / 0.0 lon protease 1 (.1) Lus10040131 [exp] 461 / 3e-147 AT5G47040 1400 / 0.0 lon protease 2 (.1) Lus10001084 [exp] 338 / 6e-104 AT5G47040 994 / 0.0 lon protease 2 (.1) Lus10003009 [exp] 337 / 4e-100 AT5G47040 1420 / 0.0 lon protease 2 (.1) Lus10011038 [exp] 336 / 8e-99 AT5G47040 1413 / 0.0 lon protease 2 (.1) Lus10001083 [exp] 149 / 1e-40 AT5G47040 374 / 9e-125 lon protease 2 (.1) Lus10033496 [exp] 52 / 3e-06 AT5G64580 1057 / 0.0 EMBRYO DEFECTIVE 3144, AAA-type ATPase family protein (.1) Lus10020879 [exp] 51 / 7e-06 AT5G64580 994 / 0.0 EMBRYO DEFECTIVE 3144, AAA-type ATPase family protein (.1) Lus10043321 [exp] 46 / 0.0002 AT4G24710 678 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA) CL0178 [poplar] [flax] PUA PF02190 [poplar] [flax] LON_substr_bdg ATP-dependent protease La (LON) substrate-binding domain CL0329 [poplar] [flax] S5 PF05362 [poplar] [flax] Lon_C Lon protease (S16) C-terminal proteolytic domain
Representative CDS sequence Show only first row Show all	>Potri.013G008900.1 pacid=42811264 polypeptide=Potri.013G008900.1.p locus=Potri.013G008900 ID=Potri.013G008900.1.v4.1 annot-version=v4.1 ATGCTAAAACTCCTCTCTTCCACTTCTCGCCAAATTCACACCCACTTTACATCCCCATGTCTCCGGGTCGCCACCGAGTCACAACCGAGCTCCTTTCTGA AGTCTCTGAGTTTACTCACTGGGTTGTCTCAGAGGGGCCATAAAAGTCCCAGTTTTTATCAAAGGGCCTTCTTTTGTTCTGATTCTTCTTCCGGAGATGG CGGCGATGGAGGTGGAATTGTTGAGGTGGAGGTAAGAAGTGGTGCCAGCGAGACGGAGGCTGAAGGTGGAGCTGCGGATGCCAGTAATTCCTCGGCTATT GTGCCTACTAGTCCTAGACCAGAGGATTATTTAACGGTGCTGGCGTTGCCATTGCCACATAGACCTCTTTTTCCTGGTTTCTACATGCCAATTTATGTGA AGGATCCTAAATTATTGGCAGCTTTACAAGAAAGCAGAAAAAGGCAAGCACCATATTGTGGAGCTTTTCTTCTTAAAGACGAGCCAGACACTGATCCCAG TGTTGTAACTGGATCTGAATCAGACAAAAATATATATGATCTTAAGGGAAAGGATCTGTATAATCGTCTTCATGAAGTTGGCACACTTGCTCAGATCACA ACTATTCAAGGTGACCAGGTTATCCTTATTGGTCATAGGCGACTTCGGATAACTGAGATGGTCAGTGAGAATCCTTTAACTGTTAAAGTTGATCATCTCA AGGACAAACCATATAACAAGGATGATGATGTTATAAAGGCAACATCTTTCGAGGTTATATCAACCTTGAGAGATGTTCTGAAGACAAGTTCACTTTGGAG AGATCATGTTCAAACATATACACAGCATGTAGGTGACTTTAATTTTCCTAGGCTAGCAGATTTTGGGGCTGCAATATCAGGCGCGAACAAGTTGCAGTGC CAAGAAGTGCTTGAAGAGCTGGATGTGTATAAACGTTTGAAACTCACACTAGAGTTGGTGAAAAAAGAAATGGAAATCAGCAAGATCCAGGAATCAATTG CAAAAGCAATTGAAGAGAAGATAAGTGGTGAGCAGCGGCGCTATTTGTTGAATGAACAACTTAAAGCCATAAAGAAGGAACTGGGATTGGAAACAGATGA CAAAACAGCACTTTCTGAAAAGTTCAGGGAAAGGCTTGAACCAAACAGGGAAAAAATCCCAGAACATGTTTTGCAAGTTATAGAAGAAGAGCTCACGAAG CTGCAGCTTTTAGAGGCTAGTTCAAGTGAATTTAATGTCACTCGTAATTATTTAGATTGGTTGACTGCATTGCCTTGGGGAAATTACAGCGATGAGAATT TTGATGTTCTACGGGCACAAAAGATTCTTGACGAAGATCATTATGGATTAACTGATGTTAAGGAAAGGATATTGGAATTTATAGCTGTTGGAAAACTAAG AGGAATCTCACAAGGAAAAATTATCTGTCTCTCTGGTCCACCTGGGGTGGGTAAAACTAGTATTGGGCGTTCAATTGCACGTGCATTAAACCGGAAGTTC TTTCGGTTTTCAGTAGGAGGCTTGTCTGATGTTGCTGAAATTAAGGGGCATCGTCGAACCTATATTGGTGCAATGCCAGGAAAGATGGTGCAGTGCCTGA AAAATGTGGGAACTGCTAACCCTCTTGTTCTGATCGATGAGATTGACAAGTTGGGAAGAGGGCACACTGGAGATCCAGCAAGTGCTTTATTGGAGCTCCT TGACCCAGAGCAAAATGCCAATTTTCTGGACCACTACCTTGATGTTCCGATTGACGTATCAAAGGTTCTCTTTGTGTGCACAGCAAATGTTTTGGACACG ATACCTAACCCCCTTCTGGATAGAATGGAGGTAGTTTCTATTGCTGGGTATATTACAGACGAGAAAGTGCATATTGCCAGAGATTATTTGGAGAAGGCTA CACGCGAAGCATGTGGCATCAAGCCTGAGCAGGTTGAAGTAACTGATGCTGCTCTTCTGGCTCTGATAGAGAATTATTGCCGAGAAGCAGGAGTTCGGAA TCTTCAAAAGCAAATTGAAAAGATCTATCGCAAGATTGCACTGCAACTTGTGCGGCAAGGAGCGATAATTGAACCTGCAGTTCCAGTGGCAGAACTAGAT GCAGAAAAAGTTGAAAGTATTGAAACCTCCACAGAATCAGTAGAGGTTAGCAGTAACAAACAAAATAATGAAACCCTAGAGGAAGCTGAAATTGTGCACA CAGATCAAACCCCTGAGGAAGCTGAGATTGTGCAGACGGATCCGCAACCTGACAATGTACAGAGTCCCCTTGATCAACCTACTGATTCAAAGGATACAAC TGAAACTGAGAAAATTGAGGAAAGTGAAGGAACTAAGGCAGTTGATAAAGTGTTGGTTGACACATCAAACTTGGCTGATTTTGTTGGCAAACCTGTTTTC CACGCTGAACGCATCTATGATCAAACTCCAGTTGGGGTTGTGATGGGCCTTGCATGGACTGCAATGGGAGGTTCCACCTTGTATATAGAGACCACTCAGG TTGAGCAAGGAGATGGGAAAGGAGCCCTTAATCTTACTGGTCAACTTGGAGAAGTAATGAAAGAAAGTGCCCAAATTGCTCACACAGTTGCTAGAGGGAT ATTGCTTGTGAAAGAACCTGATAACCTCTTCTTTTCTAATACCAAGCTTCATCTTCATGTTCCTGCTGGGGCCACACCAAAAGATGGACCGAGTGCTGGT TGCACCATGATCACATCCTTTCTATCTCTTGCCATGAAGAAGCCTGTCAGAAAAGATCTAGCAATGACTGGGGAAGTTACACTAACTGGAAAAATTCTTC CCATTGGTGGGGTCAAGGAGAAAACAATAGCGGCAAGAAGAAGCGAGGTGAAGACCATCATATTCCCATCAGCAAACAGGCGAGATTTCGATGAGCTTTC ACCTAATGTCAAAGAAGGCCTTGATGTCCACTTTGTAGATGACTATGGCCAGATATTCGAGTTAGCTTTGGGATATGATGAGAATGAGAAAAGGTAA
AA sequence Show only first row Show all	>Potri.013G008900.1 pacid=42811264 polypeptide=Potri.013G008900.1.p locus=Potri.013G008900 ID=Potri.013G008900.1.v4.1 annot-version=v4.1 MLKLLSSTSRQIHTHFTSPCLRVATESQPSSFLKSLSLLTGLSQRGHKSPSFYQRAFFCSDSSSGDGGDGGGIVEVEVRSGASETEAEGGAADASNSSAI VPTSPRPEDYLTVLALPLPHRPLFPGFYMPIYVKDPKLLAALQESRKRQAPYCGAFLLKDEPDTDPSVVTGSESDKNIYDLKGKDLYNRLHEVGTLAQIT TIQGDQVILIGHRRLRITEMVSENPLTVKVDHLKDKPYNKDDDVIKATSFEVISTLRDVLKTSSLWRDHVQTYTQHVGDFNFPRLADFGAAISGANKLQC QEVLEELDVYKRLKLTLELVKKEMEISKIQESIAKAIEEKISGEQRRYLLNEQLKAIKKELGLETDDKTALSEKFRERLEPNREKIPEHVLQVIEEELTK LQLLEASSSEFNVTRNYLDWLTALPWGNYSDENFDVLRAQKILDEDHYGLTDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKF FRFSVGGLSDVAEIKGHRRTYIGAMPGKMVQCLKNVGTANPLVLIDEIDKLGRGHTGDPASALLELLDPEQNANFLDHYLDVPIDVSKVLFVCTANVLDT IPNPLLDRMEVVSIAGYITDEKVHIARDYLEKATREACGIKPEQVEVTDAALLALIENYCREAGVRNLQKQIEKIYRKIALQLVRQGAIIEPAVPVAELD AEKVESIETSTESVEVSSNKQNNETLEEAEIVHTDQTPEEAEIVQTDPQPDNVQSPLDQPTDSKDTTETEKIEESEGTKAVDKVLVDTSNLADFVGKPVF HAERIYDQTPVGVVMGLAWTAMGGSTLYIETTQVEQGDGKGALNLTGQLGEVMKESAQIAHTVARGILLVKEPDNLFFSNTKLHLHVPAGATPKDGPSAG CTMITSFLSLAMKKPVRKDLAMTGEVTLTGKILPIGGVKEKTIAARRSEVKTIIFPSANRRDFDELSPNVKEGLDVHFVDDYGQIFELALGYDENEKR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G26860		LON1, LON_ARA_A...	lon protease 1 (.1)		Potri.013G008900 [exp]	0	1	Pt-LON_ARA_ARA.1
AT2G31740			S-adenosyl-L-methionine-depend...		Potri.001G317700 [exp]	1.00	0.9145
AT4G19210		ABCE2, ATRLI2	ARABIDOPSIS THALIANA RNASE L I...		Potri.004G235900 [exp]	3.74	0.8084	Pt-ATRLI1.1
AT5G26860		LON1, LON_ARA_A...	lon protease 1 (.1)		Potri.005G017600 [exp]	4.47	0.8399	Pt-LON_ARA_ARA.2
AT5G66960			Prolyl oligopeptidase family p...		Potri.007G035900 [exp]	5.47	0.8360
AT1G68990		MGP3	male gametophyte defective 3 (...		Potri.008G112800 [exp]	5.91	0.8323
AT1G55900		TIM50, EMB1860	embryo defective 1860, Haloaci...		Potri.011G093000 [exp]	6.32	0.8024	TIM50.1
AT1G10270		GRP23	glutamine-rich protein 23 (.1)		Potri.003G002950 [exp]	8.06	0.8383
					Potri.002G154150 [exp]	9.94	0.8415
AT3G52210			S-adenosyl-L-methionine-depend...		Potri.010G233100 [exp]	12.48	0.8087
AT1G63250			DEA(D/H)-box RNA helicase fami...		Potri.003G124100 [exp]	13.96	0.8081

Compare expression of checked genes

Potri.013G008900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.