Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27190 258 / 1e-70 NB-ARC domain-containing disease resistance protein (.1) AT4G27220 254 / 8e-70 NB-ARC domain-containing disease resistance protein (.1) AT4G26090 217 / 1e-57 RPS2 RESISTANT TO P. SYRINGAE 2, NB-ARC domain-containing disease resistance protein (.1) AT1G61190 196 / 7e-51 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G61180 195 / 1e-50 LRR and NB-ARC domains-containing disease resistance protein (.1.2) AT1G12210 189 / 1e-48 RFL1 RPS5-like 1 (.1) AT1G12280 187 / 4e-48 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G61310 186 / 1e-47 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G63350 180 / 6e-46 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G05400 179 / 9e-46 LRR and NB-ARC domains-containing disease resistance protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G015900 [exp] 2943 / 0 AT4G27190 268 / 5e-74 NB-ARC domain-containing disease resistance protein (.1) Potri.005G041101 [exp] 1690 / 0 AT4G27220 229 / 2e-61 NB-ARC domain-containing disease resistance protein (.1) Potri.005G042400 [exp] 1678 / 0 AT4G27220 234 / 4e-63 NB-ARC domain-containing disease resistance protein (.1) Potri.005G042900 [exp] 1662 / 0 AT4G27190 240 / 7e-65 NB-ARC domain-containing disease resistance protein (.1) Potri.013G027300 [exp] 1224 / 0 AT4G27190 244 / 8e-66 NB-ARC domain-containing disease resistance protein (.1) Potri.005G062130 [exp] 1222 / 0 AT4G27220 256 / 5e-70 NB-ARC domain-containing disease resistance protein (.1) Potri.005G061860 [exp] 1192 / 0 AT4G27220 230 / 1e-61 NB-ARC domain-containing disease resistance protein (.1) Potri.019G036875 [exp] 1083 / 0 AT4G27190 178 / 9e-45 NB-ARC domain-containing disease resistance protein (.1) Potri.001G426200 [exp] 512 / 1e-154 AT4G27190 288 / 1e-80 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039509 [exp] 119 / 2e-26 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10005218 [exp] 110 / 5e-24 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10026109 [exp] 103 / 7e-22 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10007261 [exp] 103 / 8e-22 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10024173 [exp] 99 / 2e-20 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10022351 [exp] 96 / 2e-19 AT3G14470 369 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Lus10005321 [exp] 96 / 2e-19 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10018937 [exp] 94 / 5e-19 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 93 / 2e-18 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10014922 [exp] 92 / 4e-18 AT3G07040 523 / 1e-171 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.013G015700.1 pacid=42810779 polypeptide=Potri.013G015700.1.p locus=Potri.013G015700 ID=Potri.013G015700.1.v4.1 annot-version=v4.1 ATGGAGATCCTTAGTTCCATCACATCCACGGTTGTGGAACTGTTAATTGTTCCCATTAGGCGCTCCGTTACTCGTGTATTCAACTACAGCAGAAATGTTC AGAGCCTCAAAACTCACTTAGAGGAGCTGTCAGATACAAAAATAAGGGTGCTGCATTCTGTAGAAGAGGCTAGAAATAGAATTGAAGACATTGAAGATGA TGTTGGAAAGTGGCTTGCTAGTGTGAATGTTATCACTGACAAGGCTAGCAGAGTTTTTGAAGATGAAGACAAGGCGAAGAAGAGGTGCTTCATGGGGTTG TTCCCTAATGTGACGAGGCGCTACAAGTTTAGTACAAAGATAGAGAGTATTGCAGAGGAGGTTGTTAAGATCAATCATCGAGGCAGATTTGATAGGGTGT CCTACCTTCCTGCTCGACGCGGGATAGGGGACAGATCTCTAAAAGATTACGAGGCTTTCGAATCAAGAAGACCTGTTTTGGATGAAATTTTGGAGGCCTT AAAAGATGATGATGTCGACCTAGTTGGAGTGTATGGGATGGCTGGTGTAGGCAAGACCACACTTGTGAAAAAGGTTGCTGAACAAGTCAAGGTGGGCAGG ATTTTTGATTTGGTGGTTCCGGCTGTTGTATCTCAGACTCCTAACCTGAGAAAAATTCAGGGGGAAATAGCAGATGGGCTAGGTCTCAAATTGGATGCAG AGACTGACAGTGGAAGAGCAGATTTGTTGTACAAGAGGCTTGAAAGTGAGACAATGCTTAAAAGTGAGAAAAGGCTTGAAAGTGAGAGAAAGGTACTTGT GATTTTGGATGACATTTGGGAGAGGCTTGAACTAGAAGATGTGGGGATTCCTTCTGGTAGGGGATGCAAAATATTGATGACATCGAGAGATCGAAATGTA TTATCCCGTGGAATGGGTACAAAAAAAGTTTTCTGGCTTCAAGTTTTACCCGAGAATGAAGCATGGAATCTGTTTAAGAAGATGGCGGGTGATGTTGTCA AATATCCCGATCTGCAGCTTGTTGCTGTAGAAATAGCCAAAAGATGTGCTGGTTTGCCCATTTTAATAGTTACTGTTGCGAGGGCATTAAAAGATGGGGA TCTGTCAGAGTGGAAGGATGCTTTGGTAAGGCTGAAAAGATTTGACAAGGATGAAATGGATAGCCGAGTTTGCTCAGCTCTAGAGTTGAGCTACGATTCT TTGAAAGGAGAAGAAATCAAGTCAGTATTCTTACTTTGTGGACAACTTGAACCTCACAGAATTGCAATCCTTGACTTACTGAAATATACCGTTGGCCTGG GATTGTTTAAACGTATCAGTACATTGGAAGAAGCAAGAAATAGACTACATAGATTGGTCAATGACCTCAAAGCCTCTTGTTTGTTGCTAGAAGGTGGCGC AGATGGAATAGTCAAAATGCATGATGTTGTTCATGGTTTTGCTGCCTTTGTAGCTTCCAGGGATCATCATGTCTTCACATTAGCATCTGGCACTGTATTA AAAGAATGGCCGGCTATGCTTGAACAGTGCAGTGCTATCTCTTTGCCGCGTTGCAAAATTCCTGGACTTCCTGAAGTACTGAACTTTCCAAAAGCTGAGT CGTTTATACTGTATAATGAAGACCCCTCGCTCAAAATCCCAGACAGTCTGTTTAAGGGAACAAAAACTCTCCAACTTGTGGATATGACAGCTGTGCAACT TCCAACACTACCTTCCTCACTTCAATTTCTCGAAAAGCTTCAAACATTGTGTCTGGATAGTTGTGGTTTGAAAGATATAGCTATGATCGGAGAGCTAAAG ATGTTAAAAGTTCTCAGCTTAATAGACTCTAACATTGTTCGGCTGCCGAGAGAAATTGGGCAGTTGACTCGTCTGCAACTTCTGGATTTGAGTAACAATC CAAGGCTTGAAATGATTCCGCCAAATGTGCTGTCATGCTTGACCCAACTAGAGGACTTGTACATGGAGAACAGCTTTTTGCAATGGAGGATTGAAGGACT AGATAGTCAAAGAAACAATGCTAGCCTGGCTGAGCTGAAATATCTGCCAAATCTAAGCACTTTATACTTGCACATTACAGATCCTATGATTCTTCCCAGA GACTTCTTCTCCAAAAAATTGGAAAGATTTAAAATTTTGATCGGAGAAGGGTGGGACTGGTCCAGGAAGCGTGAAACTTCAACAACAATGAAATTGAAGA TCAGTGCAAGCATTCAATCGGAGGAGGGGATCCAACTGTTGCTGAAGAGAACTGAAGATCTACATTTAGATGGACTAAAGGGTGTTAAAAGTGTTTCCTA TGAATTAGATGGGCAAGGTTTTCCTCGTTTGAAGCATCTCCATATCCAAAATAGTCTTGAGATTCGATATATTGTCGACTCGACTATGTTAAGTCCTTCT ATTGCTTTTCCACTCCTGGAGTCTTTGTCTCTTGACAATTTGAATAAGTTGGAGAAGATTGGTAATAGTCAACCTGTGGCGGAGTCATTTAGCAACTTGA GAATTTTGAAGGTGGAAAGTTGTCCAATGTTGAAGAATCTTTTTTCGTTGCACATGGAAAGAGGCCTTTTGCAACTGGAAGAGATCAGCATAATTGATTG CAAAATCATGGAAGTGATTGTTGCTGAGGAAAGTGGAGGCCAAGCTGACGAAGATGAAGCAATCAAGTTGACTCAACTACGAACACTGACACTGGAATAT CTACCCGAATTCACAAGCGTTTCCTCAAAATCGAATGCAGCTTCCATATCACAGACCAGGCCGGAGCCGTTAATCACTGATGTCGGGTCCAATGAAATTG CATCTGACAATGAGCTCGGGACTCCCATGACACTTTTTAACAAAAAGATTGAATTCCCTAGTTTGGAAGACCTAAAACTGTCCTCTATCAAAGTTGAGAA GATATGGCAAGACCAACCAGGAGAACTGTCCTATTGGTTTCCGAGATTAACAAGTTTGATAGTCGAGGGCTGTGGAAATCTAAAGTATTTATTTACTTCT TCTATGGTTGAAAGTCTTGCTCAACTCAAAACGCTTGAGCTATGTGATTGCACGCCTATGGAAGAAATAATAACTAAGAACGGTTTAGGAGAAGAAGGAA ATGTGAGAGGAATGATGTTTCCAAAGCTACAATTCCTCAAGCTTAAGGGCCTTCCAAATCTCACAAGATTCTGCACCAGTCACTTAATCGAATGCTACTC CTTGAAAGAACTGCGGATAGAGAATTGCCCTGCACTGAAGACCTTCATCTCTAATTCATTAAGCACAGATGCAGTAGCCAACAATCAGTTTGAAGAAACA AACTCAACTCTCTTTGATGAAAAAGTTGCATTCTCTAACATAGAGAAACTGCAAATTCTTGGCATGGATAATTTGAATATGATATGGCACACTGAATTCC ATCCAGATTCCTTCTGCAAGCTCAAGGTGCTGAAGGTAAAACAAGCAAACAAATTGTTGAATATTTTCCCACCCAATATGCTGAGAAGATTTCATAATTT AGACCACCTGGAGGTAGCTGATTGTTCTTCACTGGAAGAGGTGTTTGATCTCAGATCTCTGATGAATGAAAAAGAATCCCATGCTGTGACAGCGTTTAAG TTGAGAGATATGTATGTATGGAACCTGCCAAAATTGCAGAAAGTGTGGAATACAAATCCTCATGGAATTCTCTCTTTTCAAAACCTTCATTTAGTGAATG CTTGGAATTGTCCAAGTCTAAAAAGCCTCTTCCCAACCTCTGTAGCCTTAGGCCTTTCACAACTCGAAGAGCTTCAACTAACTAGTTGTGGAGTGGAGGA AATTGTTGCTGAGGAAGAAAGACTGGGAGAAGAACTAAAGTTTGTTTTTCCTAAAACAACCTCTTTCATTCTTTGGGAATTGCCCAAACTCAAGAGTTTC TACCCAGGAAGACACACTTCAGAGTGGCCGGTATTAAAGAAAATAGACGTGTATCATTGCCACGAAGTGCCGGTATTTGATTCGGAGCTCCAGAGCACCC AAGGAGCTTGTACACAGGACCAACTTGAGATCCAAGTTCAGCAACCGCTTTTCTCATTTGAAAAGATCATCCCCAACTTGGAAGAACTATCGCTAAACAG TAAAGATGCAGCAAAGGTATGTCAAGGCCAGTTTCCAGCAGACCTCTTTCACAAAATAAGAGTTCTTGAGCTGCAATGCTTTCATGATGCATCGGCTGAA TTTCCATTTGGTATCATGCATAGATTCCAGAATATGGAAAAGCTTCTTGTAACTCATGGTTATTTCAAAGAGCTGTTCCCATGTCGACTTGTTGATGAGG AGGAACATACTCTTGCTAGGATACTGTACTTGAAACTTTTTAATCTTCCAGATTTGGAGAAAATTTGGAACCAAGATCTCCAAGTGGACCAGCTTCTTCA AAATCTTGGAACTCTGGAAGTAAGGAGTTGTGACAGTTTGATCAATTTAGCACCATCTGCATCATCTTTCGGAAATCTAACAGCTTTGCATGTATGGGAT TGCGAAGCATTGAAATACTTGGTCACATCCTCAACTGCCAGAAGTCTTGTGCAACTCTCTGCAATGAGTATAAAGGAATGCAAAATGGTGACAGAAATTG TAGCAAGCAAGGGAGATGAAGCAGGAAATGAGATCATTTTCTGGAAATTGGAAAGTCTGAAACTTGATTGTTTAGCAAGCCTCACTAGCTTTTGCTCTAT AAATTTCACCTTCAAATTCCCCTCTTTGACAGAAGTAATTGTGACAAATTGTCCAAAGATGAAGACTTTTTCCCCGGGAATAAGCACACCAAAGCTGCAG AAAGTATGGCTATCAGAAGAAAAGGACAAAGGACATTGGGAACGCGACCTTAACATCACCATTCAACAGCTCTCTGTATAA
AA sequence Show only first row Show all	>Potri.013G015700.1 pacid=42810779 polypeptide=Potri.013G015700.1.p locus=Potri.013G015700 ID=Potri.013G015700.1.v4.1 annot-version=v4.1 MEILSSITSTVVELLIVPIRRSVTRVFNYSRNVQSLKTHLEELSDTKIRVLHSVEEARNRIEDIEDDVGKWLASVNVITDKASRVFEDEDKAKKRCFMGL FPNVTRRYKFSTKIESIAEEVVKINHRGRFDRVSYLPARRGIGDRSLKDYEAFESRRPVLDEILEALKDDDVDLVGVYGMAGVGKTTLVKKVAEQVKVGR IFDLVVPAVVSQTPNLRKIQGEIADGLGLKLDAETDSGRADLLYKRLESETMLKSEKRLESERKVLVILDDIWERLELEDVGIPSGRGCKILMTSRDRNV LSRGMGTKKVFWLQVLPENEAWNLFKKMAGDVVKYPDLQLVAVEIAKRCAGLPILIVTVARALKDGDLSEWKDALVRLKRFDKDEMDSRVCSALELSYDS LKGEEIKSVFLLCGQLEPHRIAILDLLKYTVGLGLFKRISTLEEARNRLHRLVNDLKASCLLLEGGADGIVKMHDVVHGFAAFVASRDHHVFTLASGTVL KEWPAMLEQCSAISLPRCKIPGLPEVLNFPKAESFILYNEDPSLKIPDSLFKGTKTLQLVDMTAVQLPTLPSSLQFLEKLQTLCLDSCGLKDIAMIGELK MLKVLSLIDSNIVRLPREIGQLTRLQLLDLSNNPRLEMIPPNVLSCLTQLEDLYMENSFLQWRIEGLDSQRNNASLAELKYLPNLSTLYLHITDPMILPR DFFSKKLERFKILIGEGWDWSRKRETSTTMKLKISASIQSEEGIQLLLKRTEDLHLDGLKGVKSVSYELDGQGFPRLKHLHIQNSLEIRYIVDSTMLSPS IAFPLLESLSLDNLNKLEKIGNSQPVAESFSNLRILKVESCPMLKNLFSLHMERGLLQLEEISIIDCKIMEVIVAEESGGQADEDEAIKLTQLRTLTLEY LPEFTSVSSKSNAASISQTRPEPLITDVGSNEIASDNELGTPMTLFNKKIEFPSLEDLKLSSIKVEKIWQDQPGELSYWFPRLTSLIVEGCGNLKYLFTS SMVESLAQLKTLELCDCTPMEEIITKNGLGEEGNVRGMMFPKLQFLKLKGLPNLTRFCTSHLIECYSLKELRIENCPALKTFISNSLSTDAVANNQFEET NSTLFDEKVAFSNIEKLQILGMDNLNMIWHTEFHPDSFCKLKVLKVKQANKLLNIFPPNMLRRFHNLDHLEVADCSSLEEVFDLRSLMNEKESHAVTAFK LRDMYVWNLPKLQKVWNTNPHGILSFQNLHLVNAWNCPSLKSLFPTSVALGLSQLEELQLTSCGVEEIVAEEERLGEELKFVFPKTTSFILWELPKLKSF YPGRHTSEWPVLKKIDVYHCHEVPVFDSELQSTQGACTQDQLEIQVQQPLFSFEKIIPNLEELSLNSKDAAKVCQGQFPADLFHKIRVLELQCFHDASAE FPFGIMHRFQNMEKLLVTHGYFKELFPCRLVDEEEHTLARILYLKLFNLPDLEKIWNQDLQVDQLLQNLGTLEVRSCDSLINLAPSASSFGNLTALHVWD CEALKYLVTSSTARSLVQLSAMSIKECKMVTEIVASKGDEAGNEIIFWKLESLKLDCLASLTSFCSINFTFKFPSLTEVIVTNCPKMKTFSPGISTPKLQ KVWLSEEKDKGHWERDLNITIQQLSV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27190			NB-ARC domain-containing disea...		Potri.013G015700 [exp]	0	1
AT4G27190			NB-ARC domain-containing disea...		Potri.013G015900 [exp]	3.00	0.9738
AT5G41620			unknown protein		Potri.014G093400 [exp]	3.00	0.8162
AT5G53020			Ribonuclease P protein subunit...		Potri.015G012000 [exp]	3.16	0.8663
AT1G04400		FHA, AT-PHH1, C...	cryptochrome 2 (.1.2)		Potri.008G166632 [exp]	4.00	0.8187
					Potri.008G166566 [exp]	5.47	0.7998
AT3G14470			NB-ARC domain-containing disea...		Potri.004G170232 [exp]	5.65	0.8687
AT3G42670		CLSY1, CLSY, CH...	CLASSY 1, CLASSY1, chromatin r...		Potri.008G073500 [exp]	6.00	0.8547
AT4G20800			FAD-binding Berberine family p...		Potri.001G459500 [exp]	7.87	0.7808
AT3G14460			LRR and NB-ARC domains-contain...		Potri.014G005400 [exp]	10.58	0.8244
AT4G02780		ATCPS1, ABC33, ...	GA REQUIRING 1, CPP synthase, ...		Potri.005G210300 [exp]	12.40	0.7924

Compare expression of checked genes

Potri.013G015700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.