Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PTRCAT1,AAT1.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21120 833 / 0 CAT1, AAT1 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) AT2G34960 612 / 0 CAT5 cationic amino acid transporter 5 (.1) AT1G17120 546 / 0 CAT8 cationic amino acid transporter 8 (.1) AT3G10600 405 / 1e-134 CAT7 cationic amino acid transporter 7 (.1) AT5G04770 401 / 5e-133 CAT6, ATCAT6 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) AT5G36940 215 / 7e-62 CAT3 cationic amino acid transporter 3 (.1) AT3G03720 207 / 8e-59 CAT4 cationic amino acid transporter 4 (.1.2) AT1G58030 197 / 7e-55 CAT2 cationic amino acid transporter 2 (.1) AT1G05940 166 / 2e-44 CAT9 cationic amino acid transporter 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G030833 [exp] 1167 / 0 AT4G21120 833 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.015G133100 [exp] 900 / 0 AT4G21120 845 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.012G131300 [exp] 899 / 0 AT4G21120 848 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.003G154600 [exp] 627 / 0 AT2G34960 870 / 0.0 cationic amino acid transporter 5 (.1) Potri.001G378500 [exp] 578 / 0 AT1G17120 785 / 0.0 cationic amino acid transporter 8 (.1) Potri.008G017100 [exp] 400 / 1e-132 AT3G10600 778 / 0.0 cationic amino acid transporter 7 (.1) Potri.010G241000 [exp] 398 / 7e-132 AT3G10600 781 / 0.0 cationic amino acid transporter 7 (.1) Potri.001G150700 [exp] 398 / 1e-131 AT5G04770 519 / 2e-179 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) Potri.003G083700 [exp] 392 / 8e-130 AT5G04770 509 / 7e-176 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001581 [exp] 860 / 0 AT4G21120 915 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10023271 [exp] 841 / 0 AT4G21120 902 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10042817 [exp] 639 / 0 AT4G21120 731 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10005574 [exp] 569 / 0 AT1G17120 811 / 0.0 cationic amino acid transporter 8 (.1) Lus10040142 [exp] 372 / 3e-121 AT5G04770 547 / 0.0 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) Lus10000962 [exp] 370 / 2e-120 AT5G04770 543 / 0.0 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) Lus10028195 [exp] 214 / 8e-62 AT1G05940 763 / 0.0 cationic amino acid transporter 9 (.1) Lus10042898 [exp] 209 / 6e-60 AT1G05940 763 / 0.0 cationic amino acid transporter 9 (.1) Lus10020320 [exp] 200 / 3e-56 AT1G58030 912 / 0.0 cationic amino acid transporter 2 (.1) Lus10020322 [exp] 200 / 8e-56 AT1G58030 949 / 0.0 cationic amino acid transporter 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF13520 [poplar] [flax] AA_permease_2 Amino acid permease CL0062 [poplar] [flax] APC PF13906 [poplar] [flax] AA_permease_C C-terminus of AA_permease
Representative CDS sequence Show only first row Show all	>Potri.013G030900.1 pacid=42812606 polypeptide=Potri.013G030900.1.p locus=Potri.013G030900 ID=Potri.013G030900.1.v4.1 annot-version=v4.1 ATGGGAGGAGTACAAGCAGACAGAGGTGAAGGAATCAAGAAGCGAGGATGCTCTTGCACAAAAGATGATTTTCTCCCCGAGGAGTCTTTCCGAAGCTGGA CAAATTATGTCCACGCAATCAGGCAAACTCCTGTGCGGTTTAGCGACAGGCTCCTGACTAGATCCCTGGACTCCACTGAGCTCAACGAGATCAAGTCCCG GAGTGAGCATGATATGAAGAAGAACCTTACTTGGTGGGACCTTATGTGGTTTGGTGTCGGCGCAGTGGTTGGCGCCGGCATCTTCGTGCTCACGGGACTG GAAGCACGTGAAAACACCGGCCCTGCTGTAGTATTGTCTTACGTTGTTTCGGGTGTTTCAGCCATGCTTTCTGTTTTCTGTTACACAGAATTTGCTGTGG AAATTCCTGTTGCAGGTGGTTCATTTGCTTACCTGAGGGTAGAGTTAGGTGATTTCATGGCCTTCATTGCCGCTGGGAACATCCTTCTGGAGTATGTTAT TGGTGGTGCTGCTGTGGCCCGGTCATGGACATCCTACTTTGCCACCCTCTGCAACCACCAACCTGATGATTTCCGCATTATAGCCCACAGCCTTCCTGAT GACTATGGCCACCTTGATCCTATTGCTGTTGTTGTTTCTTCTCTCATTTGCGTTCTTGCAGTGCTTAGCACCAAAGGCTCATCGCGCTTTAATTACATTA CTTCAATTATGCACGTTGCAGTGATTGTCTTCATCATTATTGCTGGCCTTACTAAAGCAGATAGAGGAAACTATAAACCATTTATGCCATATGATGTCCG TGGTATTTTTGTTGGTTCGGCTGTGCTTTTCTTTGCTTATGTTGGATTTGATGCTGTTTCCACAATGGCTGAAGAAACTGAAAATCCTGCTCGAGACATC CCTATTGGACTTCTGGGCTCAATGACAATAGTTACAGTGGCATATTGTTTGCTAGCAGCAACACTGTGCCTAATGGTGCCATACAAGCAGCTCGATGGAG AGGCTGCATTTTCTTCTGCATTTGACTATGTTGGTTTACACTGGGCAAAGTACATTGTCGCTTTATGTGCATTGGCAGGCATGACCACGGCTTTGCTCGT TTCAGCTGTCGGTCAGGCTCGGTATCTCACACACATTGCACGAACTCACATGATGCCCCCGTGGTTAGCTCATGTCAACGCAAAGACGGGGACACCAGTA AATGCCACTGTTATTATGCTCGGCGCAACAGCCATCGTTGCCTTTTTCACAAAGCTTAACATTTTGTCCAACCTTCTTTCCATCTCCACATTATTTATCT TCACACTTGTGGCCGTGGCACTTCTCGGGCGTCGCTACTATGTCAGCGGCGTCACTACACCAGTCAATCATATAAAGTTCATTCTGTGCATTGCGACTAT TCTTGGCTCTTCAACTGCTACCAGTATCATTTGGGGACTGGGTGGAGATGGTTGGGTTGGGTATGTGATTACCGTACCAATTTGGTTCTTGGGTACTCTA GCACTCAAGGTTCTTGTTCCACAAGCAAGGGATCCTAAATTATGGGGAGTCCCATTGGTGCCATGGTTGCCATCTGCTTCCATTTTTATTAACATTTTTC TTTTGGGATCAATAGATAAGGCATCATTTGAGAGATTTGGTGTGTGGACTGGTATTTTATTGATTTACTATTTCCTATTTGGATTGCACGCCTCCTATGA CACTGCGAAGGAATCTGGGGAGAATAAGGCTGCTGATGGCTGGAAGAAGATGGAAGAAGGTGTTGTGTCATCACAAGTTGAACCAGAGAGTCTAAATGCT AACAGTGCCAATTGA
AA sequence Show only first row Show all	>Potri.013G030900.1 pacid=42812606 polypeptide=Potri.013G030900.1.p locus=Potri.013G030900 ID=Potri.013G030900.1.v4.1 annot-version=v4.1 MGGVQADRGEGIKKRGCSCTKDDFLPEESFRSWTNYVHAIRQTPVRFSDRLLTRSLDSTELNEIKSRSEHDMKKNLTWWDLMWFGVGAVVGAGIFVLTGL EARENTGPAVVLSYVVSGVSAMLSVFCYTEFAVEIPVAGGSFAYLRVELGDFMAFIAAGNILLEYVIGGAAVARSWTSYFATLCNHQPDDFRIIAHSLPD DYGHLDPIAVVVSSLICVLAVLSTKGSSRFNYITSIMHVAVIVFIIIAGLTKADRGNYKPFMPYDVRGIFVGSAVLFFAYVGFDAVSTMAEETENPARDI PIGLLGSMTIVTVAYCLLAATLCLMVPYKQLDGEAAFSSAFDYVGLHWAKYIVALCALAGMTTALLVSAVGQARYLTHIARTHMMPPWLAHVNAKTGTPV NATVIMLGATAIVAFFTKLNILSNLLSISTLFIFTLVAVALLGRRYYVSGVTTPVNHIKFILCIATILGSSTATSIIWGLGGDGWVGYVITVPIWFLGTL ALKVLVPQARDPKLWGVPLVPWLPSASIFINIFLLGSIDKASFERFGVWTGILLIYYFLFGLHASYDTAKESGENKAADGWKKMEEGVVSSQVEPESLNA NSAN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Potri.013G030900 [exp]	0	1	PTRCAT1,AAT1.3
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Potri.013G030833 [exp]	1.00	0.9990
AT1G07650			Leucine-rich repeat transmembr...		Potri.004G063600 [exp]	2.00	0.9516
AT4G13510		ATAMT1;1, AMT1;...	ARABIDOPSIS THALIANA AMMONIUM ...		Potri.002G255000 [exp]	6.92	0.9279	Pt-AMT1.3,5
AT1G78140			S-adenosyl-L-methionine-depend...		Potri.002G095100 [exp]	8.48	0.9230
AT5G43060			Granulin repeat cysteine prote...		Potri.007G047600 [exp]	14.66	0.9355
AT4G28290			unknown protein		Potri.019G100601 [exp]	21.21	0.9250
AT4G38225			unknown protein		Potri.004G207400 [exp]	21.90	0.9373
AT1G48210			Protein kinase superfamily pro...		Potri.010G001500 [exp]	25.41	0.9147
AT1G28140			unknown protein		Potri.001G100300 [exp]	31.11	0.9361
					Potri.005G112150 [exp]	31.55	0.9346

Compare expression of checked genes

Potri.013G030900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.