Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14470 325 / 2e-94 NB-ARC domain-containing disease resistance protein (.1) AT3G14460 301 / 1e-84 LRR and NB-ARC domains-containing disease resistance protein (.1) AT3G50950 197 / 5e-52 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT3G07040 186 / 5e-48 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT1G50180 171 / 2e-43 NB-ARC domain-containing disease resistance protein (.1) AT3G46530 166 / 9e-42 RPP13 RECOGNITION OF PERONOSPORA PARASITICA 13, NB-ARC domain-containing disease resistance protein (.1) AT3G46730 164 / 3e-41 NB-ARC domain-containing disease resistance protein (.1) AT1G53350 159 / 2e-39 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G46710 156 / 8e-39 NB-ARC domain-containing disease resistance protein (.1) AT1G59218 155 / 2e-38 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G170400 [exp] 1555 / 0 AT3G14470 401 / 3e-121 NB-ARC domain-containing disease resistance protein (.1) Potri.004G169800 [exp] 1480 / 0 AT3G14470 393 / 1e-118 NB-ARC domain-containing disease resistance protein (.1) Potri.014G007600 [exp] 1433 / 0 AT3G14470 381 / 3e-114 NB-ARC domain-containing disease resistance protein (.1) Potri.014G012000 [exp] 1426 / 0 AT3G14470 367 / 7e-109 NB-ARC domain-containing disease resistance protein (.1) Potri.014G005600 [exp] 1402 / 0 AT3G14470 362 / 3e-107 NB-ARC domain-containing disease resistance protein (.1) Potri.014G003832 [exp] 1389 / 0 AT3G14470 370 / 1e-109 NB-ARC domain-containing disease resistance protein (.1) Potri.018G135800 [exp] 1370 / 0 AT3G14470 403 / 3e-122 NB-ARC domain-containing disease resistance protein (.1) Potri.014G002900 [exp] 1359 / 0 AT3G14470 397 / 2e-119 NB-ARC domain-containing disease resistance protein (.1) Potri.004G170700 [exp] 1357 / 0 AT3G14470 409 / 3e-124 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039540 [exp] 400 / 2e-121 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10005218 [exp] 384 / 8e-115 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10026109 [exp] 356 / 7e-104 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10039509 [exp] 352 / 7e-103 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10024173 [exp] 348 / 2e-101 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10007261 [exp] 348 / 3e-101 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10005321 [exp] 344 / 2e-99 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026132 [exp] 330 / 4e-94 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10022351 [exp] 315 / 2e-89 AT3G14470 369 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Lus10042117 [exp] 285 / 2e-80 AT3G14470 354 / 2e-105 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.013G041800.3 pacid=42811415 polypeptide=Potri.013G041800.3.p locus=Potri.013G041800 ID=Potri.013G041800.3.v4.1 annot-version=v4.1 ATGGCAGCAGAGCTTCTTCTTACGTTTTCCATGGAGGAGACTTTGAAAAGGCTGAGTTACATAGCTGCTGAAGGGATCAGACTTGCTTGGGGGTTGGAGG GCCAGCTGCGAAAGCTCAACCAGTCCTCGACCATGATCCAAGCTGTGCTCCATGATGCAGCCAGAAGACCAGTAACAGACGAGTCTGTGAAACGTTGGCT GCAGAACCTACAGGATGTAGCTTATGATGCTGAAGATGTTCTAGACGAGTTTGCGTATGAGATTATCCGCAAAAACCAAAAGAAGGGAAAGGTAAGTGAC TGCTTTTCACTCCACAACCCTGCTGCGTTCCGTTTGAATATGGGTCAAAAAGTTAAGAAGATCAATGAAGCCCTGGATGAAATCCAGAAAGATGCAGCTA GATTTGGGCTTGGATTGACATCTCTATCTATAGATAGAGCTCAAGAAGTTAGCTGGGATCCAGATCGAGAGACAGATTCCTTCCTTGACAGCTCAGAAGT TGTAGGAAGGGAGGATGATGTCTCTAATGTTGTGGAATTACTGACTAGCTTAACCAAACACCAGCATGTCCTTTCGGTTGTTCCTATTGTGGGGATGGCT GGCCTTGGAAAGACTACTGTAGCAAAAAAGTTTGTGAAGTGTAAAGTGAAGATTTTAGGAGCAATGTTGCAAATAATTGACAAAACTACGGGTGGGTTGA ACAGTCTTGATGCAATTCTTCGAAACCTTAAGAAAGAGCTGGAAAATAAGTCATTTTTTCTTGTTCTTGATAATGTGTGGAATGAAGACCATGACAAGTG GGATGCTTTGAAGGAGCTACTGTTAAAAATTAACAGAAAGAATGGGAATGCTGTTGTTGTTACAACCCGCAGTAAGAAAGTGGCAGGCATGATGGAGACT ACTCTCGGGAGTCAGCACGAGCCAAGGAGACTATCAGATGATCAAAGTTGGTTCATTATCAAGCAAAAGGTGAGCAGGGGAGGAGGAACAACAATAGCTT CAGACTTCGAGTCTATTGGAAAAGAGATTGCAAAGAAATGTGGAGGGATTCCATTACTTGCTAAAATTTTGGGAGGAACTCTTCACGGAAAGCAGGCACA GGAGTGGCAGTCAATTCTAAACAGTAGAATTTGGGATTCTCAGGATGCAAATAAAGCTTTGCGCATATTGAGACTCAGTTTTGATCACCTGTCATCGCCA GCACTAAGAAAATGTTTTGCATACTGTTCCATTTTTCCTAAAGATTTTGCAATTGAAAGGGAAGAGCTAATTCAACTTTGGATGGCTGAAGGTTTTCTTG GGCCATCAAATGGGAGGATGGAAGACATAGGCAACAAGTATTTCAATGACTTGCTTGCAAATTCCTTTTTCCAAGATGTTGAAAGGAATGAGTATGAGAT CGTAACAAGATGCAAGATGCATGACCTAGTGCATGATCTTGCATTACAGGTCTCAAAATCTGAAACGTTAACTCCGGAGGCTGAGGAGGCTGTAGATAGT GCATTTCGTATTCGTCATCTAAATCTCATTTCTTGTGGGGATGTTGAGTCAACATTTTCAGAGGTGGTTGTTGGAAAATTGCATACTATTTTCTCAATGG TTAATGTATTAAATGGGTTTTGGAAATTCAAAAGCTTGAGAACTCTCAAATTGAAACTGTCTGATACCACTAAGTTACCAGATTCAATTTGCAAGCTGAG ACATTTGAGATATCTTGATGTCTCATGTACTAATATCAGAGCATTTCCAGAATCCATCACCAAGCTCTACCATTTGGAAACATTAAGATTCATTGATTGC AAGTCCCTAGAAAAGCTTCCCAAGAAAATAAGAAATTTAATCAGCTTGAGACATCTTCATTTTGATGATTCAAACCTAGTGCCAGCTGAGGTTAGACTCT TAACACGCCTTCAAACTTTGCCTTTTTTTGTTGTTGTTCCAAATCATATAGTTGAAGAGCTGGGATGTTTGAATGAACTAAGAGGAGTGTTGAAGATATG CAAGGTTGAGCAAGTTAGAGACAAAAAAGAAGCTGAGAAGGCGAAACTACGTGAAAAAACAATGAAGAATGACCAAATTGGCCTGCAACCTCACCCAAAC ATAAGAAGCTTGACAATTAAGGGTTACGGGGGTGAAAATTTCCCATCATGGATGTCTATATTGCTACTCAATAATCTGATGGTGCTAAGATTGAAAGACT GCAACGAGTGCAGAGAACTCCCAACACTTGGATGTCTTCCTCGCCTTAAAATCTTAGAGATAACTAGAATGCCTAGTGTGAAATGTATGGGTAATGAGTT CTATAATAGCAGTGGCAGTGCAACAGTACTGTTTCCAGCACTTAAAGAATTCAGTTTGTTGGGTTTGGATGGTCTTGAAGAATGGATAGTACCAGGTGTT CAAGTATTTCCTTGTCTTGAAAAGTTGTGGATTAAGCATTGTGGAAAATATTTATCTGGTGAATTTGAAGGCTTCATGTCACTTCAACTTTTGAGGATAG ATAATTGTTCAAAGCTTGCATCCATTCCAAGCGTACAACACTGCACAGCTCTGGTGGAATTGAGTATATGGAACTGCCCTGAGTTGATCTCAATTCCTGG TGATTTCCAAGAATTGAGATACTCTTTGAAGAAATTGAGAGTTTGGGTTTTTAAATTACGATCTCTTCCAAGAGGACTACAATGTTGCGCATCTCTAGAG GAATTGGAAATATATGATTGTGGAGAGCTTATCCATATTAATGATTTGCAAGAATTTTTGAGTTATTTTCCAGAGGATTGCTTAGGCGGCCTCGCCCAGC TGAAAGGATTGAAAATCGGTGGTTTCTCAGAGGAGCTGGAGGGTTTTCCAACCGGAGTTGTAAACTCAATCAAACACCTGAGCGGATCCCTTGAAAGACT AGAGATAAATGGATGGGATAAACTGAAGAGTGTACCGCATCAACTTCAACACCTCACTTCCCTTCAAAGATTGCAAATAGGTAATTTCAAGGGAGAGGAG TTTGAGGAAGCTTTGCCAGATTGGTTGGCCAACCTTTCTTCTCTTGAATTTCTTGGGATTGAGGATTGCAAGAAGGTGAAGTATCTACCAAGTTCAACAG CCATGCAACGCCTCTCCAAATTAAAGCAATTGTGGATTTATGGAAGTCCACTTCTTTCAGAAAATTGTAGAAGGGAGAATGGCTCTGAGTGGCCCAAGAT TTCTCATATTCCAATAATCAATATAATATAG
AA sequence Show only first row Show all	>Potri.013G041800.3 pacid=42811415 polypeptide=Potri.013G041800.3.p locus=Potri.013G041800 ID=Potri.013G041800.3.v4.1 annot-version=v4.1 MAAELLLTFSMEETLKRLSYIAAEGIRLAWGLEGQLRKLNQSSTMIQAVLHDAARRPVTDESVKRWLQNLQDVAYDAEDVLDEFAYEIIRKNQKKGKVSD CFSLHNPAAFRLNMGQKVKKINEALDEIQKDAARFGLGLTSLSIDRAQEVSWDPDRETDSFLDSSEVVGREDDVSNVVELLTSLTKHQHVLSVVPIVGMA GLGKTTVAKKFVKCKVKILGAMLQIIDKTTGGLNSLDAILRNLKKELENKSFFLVLDNVWNEDHDKWDALKELLLKINRKNGNAVVVTTRSKKVAGMMET TLGSQHEPRRLSDDQSWFIIKQKVSRGGGTTIASDFESIGKEIAKKCGGIPLLAKILGGTLHGKQAQEWQSILNSRIWDSQDANKALRILRLSFDHLSSP ALRKCFAYCSIFPKDFAIEREELIQLWMAEGFLGPSNGRMEDIGNKYFNDLLANSFFQDVERNEYEIVTRCKMHDLVHDLALQVSKSETLTPEAEEAVDS AFRIRHLNLISCGDVESTFSEVVVGKLHTIFSMVNVLNGFWKFKSLRTLKLKLSDTTKLPDSICKLRHLRYLDVSCTNIRAFPESITKLYHLETLRFIDC KSLEKLPKKIRNLISLRHLHFDDSNLVPAEVRLLTRLQTLPFFVVVPNHIVEELGCLNELRGVLKICKVEQVRDKKEAEKAKLREKTMKNDQIGLQPHPN IRSLTIKGYGGENFPSWMSILLLNNLMVLRLKDCNECRELPTLGCLPRLKILEITRMPSVKCMGNEFYNSSGSATVLFPALKEFSLLGLDGLEEWIVPGV QVFPCLEKLWIKHCGKYLSGEFEGFMSLQLLRIDNCSKLASIPSVQHCTALVELSIWNCPELISIPGDFQELRYSLKKLRVWVFKLRSLPRGLQCCASLE ELEIYDCGELIHINDLQEFLSYFPEDCLGGLAQLKGLKIGGFSEELEGFPTGVVNSIKHLSGSLERLEINGWDKLKSVPHQLQHLTSLQRLQIGNFKGEE FEEALPDWLANLSSLEFLGIEDCKKVKYLPSSTAMQRLSKLKQLWIYGSPLLSENCRRENGSEWPKISHIPIINII

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14470			NB-ARC domain-containing disea...		Potri.013G041800 [exp]	0	1
AT4G27190			NB-ARC domain-containing disea...		Potri.001G445150 [exp]	3.74	0.8759
AT1G77210		AtSTP14	sugar transport protein 14, su...		Potri.009G048200 [exp]	4.00	0.8624
AT2G27170		SMC3, TTN7	TITAN7, STRUCTURAL MAINTENANCE...		Potri.009G154550 [exp]	4.47	0.8624
AT1G05160		ATKAO1, CYP88A3	ENT-KAURENOIC ACID OXYDASE 1, ...		Potri.013G161800 [exp]	8.12	0.8634	Pt-KAO2.1,CYP88A8
AT2G01350		QPT	quinolinate phoshoribosyltrans...		Potri.010G113500 [exp]	9.94	0.8498
AT3G11980		FAR2, MS2	MALE STERILITY 2, FATTY ACID R...		Potri.016G031600 [exp]	14.73	0.8571
AT4G02550			unknown protein		Potri.007G059900 [exp]	15.49	0.8475
AT2G32950		FUS1, EMB168, D...	FUSCA 1, EMBRYO DEFECTIVE 168,...		Potri.011G021700 [exp]	25.03	0.8253
					Potri.013G064900 [exp]	26.83	0.8436
AT4G38160		PDE191	pigment defective 191, Mitocho...		Potri.009G170300 [exp]	28.46	0.7395

Compare expression of checked genes

Potri.013G041800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.