Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40010 536 / 0 ASD, AATP1 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) AT3G28580 513 / 2e-179 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28510 508 / 5e-177 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28540 481 / 4e-167 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G28520 435 / 3e-149 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28600 432 / 5e-148 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28610 422 / 5e-144 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G40000 413 / 9e-141 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28570 404 / 1e-137 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G25835 352 / 2e-116 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G047950 [exp] 916 / 0 AT5G40010 538 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.019G020800 [exp] 773 / 0 AT5G40010 526 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.019G020700 [exp] 768 / 0 AT5G40010 531 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G091500 [exp] 579 / 0 AT5G40010 582 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.015G067400 [exp] 560 / 0 AT5G40010 538 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G012500 [exp] 531 / 0 AT5G40010 556 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G012601 [exp] 528 / 0 AT5G40010 566 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G012700 [exp] 528 / 0 AT5G40010 566 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G091300 [exp] 407 / 4e-140 AT5G40010 441 / 2e-153 ATPase-in-Seed-Development, AAA-ATPase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014496 [exp] 706 / 0 AT5G40010 577 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10032188 [exp] 606 / 0 AT5G40010 497 / 4e-173 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10015354 [exp] 564 / 0 AT5G40010 598 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10042166 [exp] 533 / 0 AT5G40010 526 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10014498 [exp] 531 / 0 AT5G40010 598 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10015349 [exp] 520 / 0 AT5G40010 536 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10004258 [exp] 519 / 0 AT3G28580 507 / 1e-176 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10005256 [exp] 466 / 1e-158 AT5G40010 501 / 4e-172 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10014497 [exp] 459 / 3e-158 AT3G28580 463 / 7e-160 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10030667 [exp] 459 / 4e-158 AT5G40010 501 / 2e-174 ATPase-in-Seed-Development, AAA-ATPase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA) CL0023 [poplar] [flax] PF14363 [poplar] [flax] AAA_assoc Domain associated at C-terminal with AAA
Representative CDS sequence Show only first row Show all	>Potri.013G047900.2 pacid=42811591 polypeptide=Potri.013G047900.2.p locus=Potri.013G047900 ID=Potri.013G047900.2.v4.1 annot-version=v4.1 ATGAAGACAGTAGATATGTTTACTCAGTTAGGATCTGTAATTGCGAGTGTCATGTTTTTTTGGGCTATGTTCAAGCAATATTGTCCATATCAGTTGCAAA ACTATTTCGAGAAACACTCCAAAAGCGTCTTCACTTTTGTTTACCCTTTCATTCAAATTACGTTCAATGAATTCACTGGAGATCGTTTCATGCGGAGTGA AGCTTACTCTGCTATCGAGAACTACCTTGGTTCTAGTTCATCTATGCAGGCTAAGCGGCTCAAGGCTGATGTCGTCAAGAACAGCACCCAGTCCCTTGTT CTTAGCATGGATGACTTTGAAGAGGTTACTGACGAGTTCCAAGGAGTCAAACTACGGTGGGCTTCTGGGAAACATATTTCCAAGACACAACCATTTTCTT TCTATCCAGTAACGGATGAGAGAATGTACTACACGCTCACTTTCCATAAAAGACACCGGAATCTCATACTCGGGACTTACTTGAGTCATGTCTTGAAAGA GGGTGATGCAATCAAGGTGAAAAACCGGCAAAGGAAGCTTTACACTAATAGTGGATCATGCTGGAGGCATGTAGTGTTTGAGCATCCGGCTAGTTTTGAG TCGATTGCAATGGAGGCTGATAAGAAGAAGGAAATCATGGATGATCTCATCACATTCAGCCAGGCAGAAGAGTTCTATGCAAGAATTGGAAGGGCTTGGA AGCGGGGTTATCTTCTTTATGGCCCCCCAGGGACTGGTAAATCCACTATGATCGCAGCCATGGCTAATCTTTTGAACTACGATATCTATGATCTCGAATT GACTTCCGTGAAAGATAACACTGAGCTGAGAAAGCTACTGATCGAGACATCGAGCAGATCCATTATTGTGATCGAGGATATTGACTGTTCTCTTGATCTA ACCGGTCAAAGGAAGAAGAAAAAGGAAGAACAGGGAAGGGGAGATGAGAAGGATCCAAAGCTGAAGCTGCCAAAGGAAGAAACAGGTGGCAAACAGAGTC AGGTGACTCTCTCTGGGCTTTTGAATTTTATTGATGGACTCTGGTCAGCTTGTAAAGGAGAAAGACTGGTTGTTTTCACAACTAATTTCTTTGAGAAACT CGATCCAGCTCTCATCAGGAAAGGAAGGATGGACAAGCACATAGAATTGTCCTATTGTAGCTTTGAAGCATTCAAGGTTTTGGCTAAGAATTACCTTCGG CTTGAAACACACCACTTGTATTCCAAGATCCAAGAGTTGCTGGGAGAGACCAAAATGACTCCCGCTGAAGTTGCGGAGCATTTAATGCCAAAGACTCTAC CTGGAGACAGCAAGGTTTGCTTGGAGGGACTAATAGCAGGGCTTGAGAAGGCAAAAGAGGACGCCAGATTGAAAGCTGAAGAAGAAGCAAGAGAAAAGGG CTCATCACCTGAAGAAAATGCAAAAGAGCAAGGAATAGAGAATGGTTTGTGTGATAATGGAAATACAGAATTGAATTGTAAGGAAAAAGAGTAG
AA sequence Show only first row Show all	>Potri.013G047900.2 pacid=42811591 polypeptide=Potri.013G047900.2.p locus=Potri.013G047900 ID=Potri.013G047900.2.v4.1 annot-version=v4.1 MKTVDMFTQLGSVIASVMFFWAMFKQYCPYQLQNYFEKHSKSVFTFVYPFIQITFNEFTGDRFMRSEAYSAIENYLGSSSSMQAKRLKADVVKNSTQSLV LSMDDFEEVTDEFQGVKLRWASGKHISKTQPFSFYPVTDERMYYTLTFHKRHRNLILGTYLSHVLKEGDAIKVKNRQRKLYTNSGSCWRHVVFEHPASFE SIAMEADKKKEIMDDLITFSQAEEFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLNYDIYDLELTSVKDNTELRKLLIETSSRSIIVIEDIDCSLDL TGQRKKKKEEQGRGDEKDPKLKLPKEETGGKQSQVTLSGLLNFIDGLWSACKGERLVVFTTNFFEKLDPALIRKGRMDKHIELSYCSFEAFKVLAKNYLR LETHHLYSKIQELLGETKMTPAEVAEHLMPKTLPGDSKVCLEGLIAGLEKAKEDARLKAEEEAREKGSSPEENAKEQGIENGLCDNGNTELNCKEKE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Potri.013G047900 [exp]	0	1
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Potri.012G131300 [exp]	1.00	0.8777	Pt-AAT1.1
AT5G06800	GARP		myb-like HTH transcriptional r...		Potri.016G047900 [exp]	2.44	0.8541
AT4G17940			Tetratricopeptide repeat (TPR)...		Potri.001G140500 [exp]	5.09	0.7778
AT3G18710		ATPUB29	ARABIDOPSIS THALIANA PLANT U-B...		Potri.005G189800 [exp]	5.19	0.8361
AT3G06390			Uncharacterised protein family...		Potri.008G205000 [exp]	6.32	0.8160
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Potri.017G048700 [exp]	10.09	0.8243
AT3G11810			unknown protein		Potri.008G091600 [exp]	14.14	0.8273
					Potri.013G084650 [exp]	20.49	0.7841
AT1G20220			Alba DNA/RNA-binding protein (...		Potri.002G066100 [exp]	21.90	0.7754
AT3G14470			NB-ARC domain-containing disea...		Potri.018G017900 [exp]	25.13	0.8322	Pt-RGA.54

Compare expression of checked genes

Potri.013G047900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.