Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G29000 321 / 3e-106 GARP PHL1 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) AT3G04450 295 / 2e-95 GARP Homeodomain-like superfamily protein (.1.2) AT4G28610 256 / 8e-81 GARP ATPHR1, PHR1 phosphate starvation response 1 (.1) AT2G20400 187 / 1e-54 GARP myb-like HTH transcriptional regulator family protein (.1) AT2G01060 175 / 3e-51 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT3G13040 172 / 3e-48 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT5G06800 169 / 4e-48 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT4G13640 149 / 2e-41 GARP UNE16 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) AT3G24120 148 / 7e-41 GARP Homeodomain-like superfamily protein (.1.2) AT3G04030 144 / 1e-38 GARP Homeodomain-like superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G020900 [exp] 646 / 0 AT5G29000 306 / 4e-101 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Potri.002G257800 [exp] 376 / 2e-126 AT4G28610 332 / 6e-110 phosphate starvation response 1 (.1) Potri.007G003200 [exp] 187 / 9e-54 AT3G13040 330 / 1e-108 myb-like HTH transcriptional regulator family protein (.1.2) Potri.014G000700 [exp] 185 / 2e-53 AT3G13040 308 / 6e-101 myb-like HTH transcriptional regulator family protein (.1.2) Potri.016G047900 [exp] 178 / 3e-51 AT5G06800 233 / 3e-73 myb-like HTH transcriptional regulator family protein (.1.2) Potri.006G191000 [exp] 176 / 3e-50 AT5G06800 252 / 2e-80 myb-like HTH transcriptional regulator family protein (.1.2) Potri.006G000800 [exp] 173 / 5e-50 AT2G01060 321 / 1e-109 myb-like HTH transcriptional regulator family protein (.1.2) Potri.016G001100 [exp] 171 / 3e-49 AT2G01060 318 / 5e-109 myb-like HTH transcriptional regulator family protein (.1.2) Potri.001G314800 [exp] 156 / 8e-44 AT4G13640 345 / 2e-119 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008197 [exp] 451 / 2e-156 AT5G29000 318 / 3e-105 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Lus10029607 [exp] 331 / 6e-109 AT5G29000 279 / 2e-89 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Lus10032778 [exp] 322 / 3e-106 AT5G29000 272 / 2e-87 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Lus10027958 [exp] 310 / 4e-102 AT5G29000 132 / 7e-35 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Lus10024938 [exp] 307 / 6e-100 AT4G28610 314 / 2e-103 phosphate starvation response 1 (.1) Lus10022886 [exp] 307 / 8e-100 AT4G28610 310 / 7e-102 phosphate starvation response 1 (.1) Lus10022885 [exp] 301 / 8e-98 AT4G28610 299 / 2e-97 phosphate starvation response 1 (.1) Lus10035705 [exp] 187 / 1e-53 AT3G13040 372 / 4e-125 myb-like HTH transcriptional regulator family protein (.1.2) Lus10037296 [exp] 175 / 5e-49 AT3G13040 364 / 5e-122 myb-like HTH transcriptional regulator family protein (.1.2) Lus10039124 [exp] 164 / 8e-47 AT2G01060 350 / 6e-122 myb-like HTH transcriptional regulator family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.013G048000.3 pacid=42811704 polypeptide=Potri.013G048000.3.p locus=Potri.013G048000 ID=Potri.013G048000.3.v4.1 annot-version=v4.1 ATGTCCTCATCTTTTCCAGTTCTTCCTACTGCTGTTGAAGAAAAGCATCCCAATTTGCTTTGTTCTTTTCAGGTTTCTTTGGAAAGGGAAATGATGAGAA ATTCTGCATCTCAGCAGGCATCGTCATTGAGTCCCGGTAACAGGAGTGTTGGGCCATTGTTTTCATCATCTTCTAGATTTTCCAATGATATGCATGTCTC TTCAGTTTCACCACAAGGAAGGCAATCTCATAATTCTCCATTCATTTCTCAGTCGCTAAGGGACAGAGGAAATTTTACACCAACCCATGATTCTCATTCA GAAGTGCAATCCACAGAATTCATTGCTTACTCTGATGAAAATAAGGATCTCTCCTGGCCTGTTGATCCACTTCAGGACTTGCTTGATTTTGCTGGAAATG TCCATGTCCAAAATGGTCAGGTGGAAAGCAGTGCAGGTGTCTTTGCATCCGAGGATCATGCTAAGAGAACAGACTGGCAGGAGTGGGCAGATCAGTTGAT CTCTGTTGATGATGAACTGGAACCAAATTGGAGTGAAATTCTGAATGATGTCAACAAGACAGATTCCAGACAGAAGGAGTTGAAGCCATCTCCTAATATC TCAGTGAAACAACCCCCAATTCATCAGCATCAAACTGCTCATAGTGGAGAAGTATGTGCTGTTGCTAATCCACTGTCCGCTGCACCCACAACAAAACCCC GAATGCGCTGGACACCAGAACTTCATGAGGCTTTTGTGGAAGCTGTCAATCAGCTTGGGGGTAGTGAAAGAGCTACTCCGAAGGGTGTCTTAAAGCACAT GAATGTTGAAGGCTTGACCATCTATCACGTTAAAAGCCACCTGCAGAAGTACAGAAGTGCTAGATATAAACCAGAGTCATCTGATGAGAAAAAAACGAGT CCCATTGAAGAAATGAAATCTCTTGACTTGAAGACGAGTATGGGGATCACAGAAGCATTGCGATTGCAAATGGAAGTTCAGAAGCGACTCCACGAACAAC TTGAGATCCAGAGAAATTTACAATTGAGGATCGAGGAGCAGGGGAGGCATCTTCAAGAGATGTTTGAGAAACAAAGAAAGATTGAGGATGACAAGTCCAA GGCTCCTTCCTCCTCCCAAGACGACCCTTCCCCTCTACAAGCAAAGTTAGAGCAGTCATCTGCAAATTACAAATTAGAAGCCTCAGAGTTGGACCTTGTC AAAACAAGTAATGAGAGTGCTTTACTAGAAGAAAGTTCCCAGAGTATAAGCAGAAAGCAAAAGGCACCAGAGGAAAGAAACGATCAGGTCCTTGATCAAA TTGATGAGGAATCCAGTCCAGCACCAATAAAACGACCAAGAAGAGATGAAACAGCTGAATTGTCTACCGGGGCTGCATCCAATTGA
AA sequence Show only first row Show all	>Potri.013G048000.3 pacid=42811704 polypeptide=Potri.013G048000.3.p locus=Potri.013G048000 ID=Potri.013G048000.3.v4.1 annot-version=v4.1 MSSSFPVLPTAVEEKHPNLLCSFQVSLEREMMRNSASQQASSLSPGNRSVGPLFSSSSRFSNDMHVSSVSPQGRQSHNSPFISQSLRDRGNFTPTHDSHS EVQSTEFIAYSDENKDLSWPVDPLQDLLDFAGNVHVQNGQVESSAGVFASEDHAKRTDWQEWADQLISVDDELEPNWSEILNDVNKTDSRQKELKPSPNI SVKQPPIHQHQTAHSGEVCAVANPLSAAPTTKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKHMNVEGLTIYHVKSHLQKYRSARYKPESSDEKKTS PIEEMKSLDLKTSMGITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRHLQEMFEKQRKIEDDKSKAPSSSQDDPSPLQAKLEQSSANYKLEASELDLV KTSNESALLEESSQSISRKQKAPEERNDQVLDQIDEESSPAPIKRPRRDETAELSTGAASN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G29000	GARP	PHL1	PHR1-like 1, Homeodomain-like ...		Potri.013G048000 [exp]	0	1
AT1G06230		GTE4	global transcription factor gr...		Potri.001G376400 [exp]	1.41	0.8981	GTE910
AT3G55270		MKP1, ATMKP1	ARABIDOPSIS MITOGEN-ACTIVATED ...		Potri.008G049900 [exp]	4.00	0.8694	Pt-MKP1.2
AT2G38410			ENTH/VHS/GAT family protein (....		Potri.016G131900 [exp]	7.21	0.8793
AT4G14350			AGC (cAMP-dependent, cGMP-depe...		Potri.011G157000 [exp]	7.48	0.8527
AT3G22430			unknown protein		Potri.010G087400 [exp]	8.36	0.8634
AT5G07610			F-box family protein (.1)		Potri.013G067800 [exp]	8.48	0.8521
AT4G33150		LKR/SDH, SDH	lysine-ketoglutarate reductase...		Potri.006G134300 [exp]	8.48	0.8501
AT3G09850			D111/G-patch domain-containing...		Potri.018G113600 [exp]	9.79	0.8368
AT1G17640			RNA-binding (RRM/RBD/RNP motif...		Potri.003G040900 [exp]	9.79	0.8425
AT5G29000	GARP	PHL1	PHR1-like 1, Homeodomain-like ...		Potri.019G020900 [exp]	10.00	0.8467

Compare expression of checked genes

Potri.013G048000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.