Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04340 1700 / 0 EMB2458 embryo defective 2458, FtsH extracellular protease family (.1) AT5G42270 184 / 3e-48 FTSH5, VAR1 VARIEGATED 1, FtsH extracellular protease family (.1) AT1G50250 183 / 8e-48 FTSH1 FTSH protease 1 (.1) AT5G53170 168 / 1e-42 FTSH11 FTSH protease 11 (.1) AT3G47060 159 / 1e-39 FTSH7 FTSH protease 7 (.1) AT5G58870 159 / 1e-39 FTSH9 FTSH protease 9 (.1) AT1G06430 157 / 3e-39 FTSH8 FTSH protease 8 (.1) AT3G02450 152 / 5e-38 cell division protein ftsH, putative (.1) AT1G07510 146 / 2e-35 FTSH10 FTSH protease 10 (.1) AT2G30950 143 / 7e-35 FTSH2, VAR2 VARIEGATED 2, FtsH extracellular protease family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G012000 [exp] 186 / 8e-49 AT5G42270 1094 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.005G249200 [exp] 186 / 1e-48 AT5G42270 1077 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.015G020700 [exp] 167 / 2e-42 AT5G53170 1096 / 0.0 FTSH protease 11 (.1) Potri.002G215100 [exp] 162 / 4e-41 AT2G30950 1040 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.001G249100 [exp] 159 / 9e-40 AT5G58870 997 / 0.0 FTSH protease 9 (.1) Potri.009G043100 [exp] 158 / 2e-39 AT5G58870 1039 / 0.0 FTSH protease 9 (.1) Potri.014G139500 [exp] 154 / 3e-38 AT2G30950 1057 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.002G220366 [exp] 144 / 4e-38 AT1G06430 405 / 1e-138 FTSH protease 8 (.1) Potri.012G000700 [exp] 149 / 1e-36 AT5G53170 1076 / 0.0 FTSH protease 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010356 [exp] 1261 / 0 AT3G04340 1202 / 0.0 embryo defective 2458, FtsH extracellular protease family (.1) Lus10036490 [exp] 1121 / 0 AT3G04340 1067 / 0.0 embryo defective 2458, FtsH extracellular protease family (.1) Lus10016003 [exp] 183 / 1e-47 AT5G42270 1129 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10021824 [exp] 177 / 1e-45 AT5G42270 934 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10012277 [exp] 169 / 1e-44 AT1G50250 935 / 0.0 FTSH protease 1 (.1) Lus10001054 [exp] 163 / 2e-41 AT2G30950 1154 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10001420 [exp] 163 / 6e-41 AT2G30950 1155 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10038819 [exp] 162 / 9e-41 AT5G53170 1064 / 0.0 FTSH protease 11 (.1) Lus10014930 [exp] 162 / 1e-40 AT5G53170 1077 / 0.0 FTSH protease 11 (.1) Lus10001060 [exp] 157 / 7e-39 AT5G53170 1090 / 0.0 FTSH protease 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA) CL0126 [poplar] [flax] Peptidase_MA PF01434 [poplar] [flax] Peptidase_M41 Peptidase family M41
Representative CDS sequence Show only first row Show all	>Potri.013G048700.1 pacid=42811411 polypeptide=Potri.013G048700.1.p locus=Potri.013G048700 ID=Potri.013G048700.1.v4.1 annot-version=v4.1 ATGGCTTCCTTCATCTCTCCGTCTCTCTCTCATCTCTTTCCATTACACAAAGACCCTCCATCACCAATCAAATACAGAATCAGAACCACAAAATTACAAC GAAACAGACACAAAGCTCTCCCTTTTGTCCATAGTTTATGTGTCTTTGGGTTTCAAGGAGCTTCAAAGTGCTCTAAGAGCAGTCAAGACCTGCCTTTGGA TTCACCCAGAAGGTTAAAACAAGAAAAAGAATTAGTTTTCTCAAATGGGTTCCTGTCAAAACCTGAAAAAGGTGTATTTCAATGCATTACAAGGCCTATA GTGCTCACATTGTTTTGTATTGCAATTGGGTTTTATCCACTCGGTGCTTTGCCACCTCTTGCTGTGGCTGATGTCGCGGTGGCTAGTGAAGTTGCAGTTA AAAAGAAAGAGAAAAAATTGAATAAAGAATCAAACTTGAAGGAGCATGAGTTTTCAAATTATACTAAAAGTTTGCTGGAGGAGGTTTCGAGGTTGTTGAA GCGTATAGAGGAGGTTAGGAAAGGAAATGGCAGTGTAGAGGAGGTGAAGTTGGTGTTAAAAGCGGTAAAAGGAAGGAAAGAGGAGTTGCAGAGGGAAATT ATGGAGGGGATGTATTTGGAAGTGAGGCAGTTGAGGAAGGAAAAGGGGAAGATGGAAAATCGCTCAGAGGAGATTGTGGAAGAGGTGGAAAAGGAAAAGA AAGAGTTTGATAATTTGAGGGAAGAGGGTGATAAAGAAAGAATGGAGGCGTTGGAGGAGAGAATGAGAGTGATGGATGAGGAGTACACTAGTGTATGGGA GAGAATTGGAGAGATTGGGGGTGAGATTTTGAGGAGGGAGACGATGGCATTGAGTGTTGGGGTTAGGGAACTTTGCTTTATTGAGAGAGAGTGTGAGGAA TTGGTGAAGAGGTTTAGCCAGGAAATGAGGCAAAAGAGTACAGACAGTCAGAAAAAGAGCTCTATTACCAAGCTTCCAAGATCTGACATTCAGAAAGAAC TGGAAACTGCACAAAGAAAATTATTGGAGCAAATGATTCTGCCTAATGTTGTAGAAGTTGAAGGCCTTGGGCTATTATTTGATCAAGATTCGATTGATTT TGCTGCACGTATAAGACAAGGCCTTAAGGATTCACAGAAGCTGCAGAAAGATACTGAGGCTCTTATTAGAAAAAAGATGAAGAGGTTCGGTGATGAAAAG CATTTGGTTGTGAAGACATCAGCAGATGAGATTGTGAAGGGCTATCCAGAAGTTGAATTGAAGTGGATGTTTGGGGATAAGGAGGTTGTAGTTCCTAAAG CAATTCACCTTCACCTGTACCATAGCTGGAAAAAATGGCGTGAAGAAGCTAAGGCAGAACTGAAAAGAAAATTGTTGGAAGATGCGGATTTTGGTAAAGA ATATGTGGCCCAAAAACAGGAACAAGTTCTTCTGGGTCGCGATAGAGTAGTATCAAAGACATGGTACAGTGAAGAAAAAAACAGGTGGGAAATGGAACCA ATAGCTGTTCCATATGCTGTCTCCAAGAAATTAGTGGAGCATGCTCGAATTAGGCATGACTGGGGTGCCATGTACATTGCACTGAAGGGGGATGACAAGG AATATTTTGTTGATATTAAGGAATTTGAAATTCTCTATGAAGATTTTGGAGGGTTTGATGGGCTGTACATGAAAATGCTTGCCAGTGGCATTCCAACTAG TGTTCATCTGATGTGGATCCCTTTATCAGAGTTGGATTTGGGTCAACAGTTTCTCATGGCATTAAGGCTGACTGGTCAATGCTTAAATGGATTATGGAAG AGTAGAATTGTTTCATATGGGAGAGATTGGGTTGTAGAGAAAGTTAGAAATATAAATGATGACATAATGATGGTGATCGTGTTCCCCATGCTGGAGCTCA TCGTTCCATTCCCGGTGAGGATGCAGTTGGGGATGGCATGGCCAGAGGAAATAGATCAAACTGTTGGCTCAACGTGGTACTTGAAATGGCAATCTGAGGC AGAAATAAATTTTAAGTCCAGAAAAACTGATGATATGCAATGGTTTTTTTGGTTTGCCATTAGATTGTTTATATATGGATATATTTTGTTCCATGCCTTC CGGTTTCTGAAGAGAAAAGTTCCAAGACTTTTAGGTTTTGGACCTTTACGTAGCAGAGATCCAAACTTCCTGAAGTTACGCAGAGTGAAATACTATGTTA AGTACAAGTTGAGGACCATCAAACGTAAGAAAAAAGCCGGGATTGATCCTATAAGCACTGCATTTGATGGAATGAAGAGGGTAAAGAATCCTCCTATACC ATTGAAGGATTTTTCTAGTGTTGAGTCTATGAGAGAGGAAATCAATGAAGTTGTTGCATTTCTACAAAATCCTAGTGCTTTTCAAGAAATGGGTGCCCGT GCACCTCGAGGAGTTCTTATTGTAGGTGAGAGGGGAACGGGAAAAACATCTCTAGCACTGGCTATCGCTGCAGAAGCTAGGGTACCGGTTGTAAAAGTTG AAGCCCAGCAATTGGAGGCTGGGCTATGGGTTGGCCAAAGTGCATCCAATGTCAGGGAACTGTTCCAGACAGCTAGGGATTTGGCCCCTGTAATAATTTT TGTGGAGGATTTTGACCTTTTTGCCGGTGTCCGTGGTAAGTTCATACATACTAAAAAGCAGGATCATGAGGCTTTCATTAATCAACTTCTGGTGGAGCTT GATGGGTTTCAGAAACAAGATGGCGTTGTTCTGATGGCTACAACTAGAAATATAAATCAAATTGATGAAGCCTTGCAGCGACCTGGACGGATGGATAGAG TATTTTATCTTCAACAGCCAACACAAGCAGAGAGGGAGAAGATTTTACACTTATCTGCTAAAGAAACCATGGATGAAGACCTTATTGATTTTGTAGACTG GAGAAAGGTTGCTGAGAAGACAGCTCTTTTAAGACCAGTAGAATTAAAACTTGTTCCTGTTGCTTTGGAAGGTAGTGCCTTCAAGAGCAAGTTTCTTGAC ACAGATGAACTCATGAGCTATTGCAGTTGGTTTGCGACTTTCAGCTGTTTGGTTCCAGATTGGGTTCGGAAAACAAAAATTGCAAAGAAGATGAGCAGGA TGATGGTGAATCATTTGGGACTAACATTGAGTAAAGAGGATTTGCAGAACGTGGTTGATCTAATGGAGCCATATGGTCAGATAAGCAATGGAATAGAACT TCTGAATCCTCCACTTGATTGGACAAGGGAGACCAAATTTCCACATGCTGTTTGGGCTGCTGGCCGTGGTCTGATTGCCCTTCTTTTACCCAACTTTGAT GTGGTTGATAATCTATGGCTGGAGCCATGTTCTTGGCAGGGTATTGGATGTACAAAGATTAGCAAGGCAAAAAATGAAGGTTCCTTGAATGGGAATTCAG AATCAAGATCATACCTTGAAAAGAAGCTTGTATTTTGTTTTGGTTCATATATATCATCCCAACTACTACTTCCGTTTGGGGAAGAAAATTTTCTTTGTTC TTCAGAATTGAAACAGGCTCAGGAGATAGCTACAAGGATGGTGATTCAGTATGGGTGGGGGCCTGATGACAGTCCTGCAATTTACTACAGTAACAAAGGG GTTACATTTTTAAGCGCGGGGAACAGCCATGAGTATGAGATGGCAGCTAAAGTTGAAAAGCTTTACGATTTAGCATATCTTAAAGCAAAGGGTATGCTTC AGAAAAATCGACGAGTTCTTGAAAAGATTGTTGAAGAATTGCTTGAATTTGAGATTTTATCTGGCAAGGATTTAGAAAGGATGGTTGATGATAATGGTGG CATTCGGGAGAAAGAGCCCTTTTCCCTTTCCAAAGCTAATTATACAGAGGCATTGTCTAGCAGCTTTCTAGATCAAGGCAATGGAGCAGGACCTGCTCTT TTAGGTGCATCTACCTAG
AA sequence Show only first row Show all	>Potri.013G048700.1 pacid=42811411 polypeptide=Potri.013G048700.1.p locus=Potri.013G048700 ID=Potri.013G048700.1.v4.1 annot-version=v4.1 MASFISPSLSHLFPLHKDPPSPIKYRIRTTKLQRNRHKALPFVHSLCVFGFQGASKCSKSSQDLPLDSPRRLKQEKELVFSNGFLSKPEKGVFQCITRPI VLTLFCIAIGFYPLGALPPLAVADVAVASEVAVKKKEKKLNKESNLKEHEFSNYTKSLLEEVSRLLKRIEEVRKGNGSVEEVKLVLKAVKGRKEELQREI MEGMYLEVRQLRKEKGKMENRSEEIVEEVEKEKKEFDNLREEGDKERMEALEERMRVMDEEYTSVWERIGEIGGEILRRETMALSVGVRELCFIERECEE LVKRFSQEMRQKSTDSQKKSSITKLPRSDIQKELETAQRKLLEQMILPNVVEVEGLGLLFDQDSIDFAARIRQGLKDSQKLQKDTEALIRKKMKRFGDEK HLVVKTSADEIVKGYPEVELKWMFGDKEVVVPKAIHLHLYHSWKKWREEAKAELKRKLLEDADFGKEYVAQKQEQVLLGRDRVVSKTWYSEEKNRWEMEP IAVPYAVSKKLVEHARIRHDWGAMYIALKGDDKEYFVDIKEFEILYEDFGGFDGLYMKMLASGIPTSVHLMWIPLSELDLGQQFLMALRLTGQCLNGLWK SRIVSYGRDWVVEKVRNINDDIMMVIVFPMLELIVPFPVRMQLGMAWPEEIDQTVGSTWYLKWQSEAEINFKSRKTDDMQWFFWFAIRLFIYGYILFHAF RFLKRKVPRLLGFGPLRSRDPNFLKLRRVKYYVKYKLRTIKRKKKAGIDPISTAFDGMKRVKNPPIPLKDFSSVESMREEINEVVAFLQNPSAFQEMGAR APRGVLIVGERGTGKTSLALAIAAEARVPVVKVEAQQLEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGKFIHTKKQDHEAFINQLLVEL DGFQKQDGVVLMATTRNINQIDEALQRPGRMDRVFYLQQPTQAEREKILHLSAKETMDEDLIDFVDWRKVAEKTALLRPVELKLVPVALEGSAFKSKFLD TDELMSYCSWFATFSCLVPDWVRKTKIAKKMSRMMVNHLGLTLSKEDLQNVVDLMEPYGQISNGIELLNPPLDWTRETKFPHAVWAAGRGLIALLLPNFD VVDNLWLEPCSWQGIGCTKISKAKNEGSLNGNSESRSYLEKKLVFCFGSYISSQLLLPFGEENFLCSSELKQAQEIATRMVIQYGWGPDDSPAIYYSNKG VTFLSAGNSHEYEMAAKVEKLYDLAYLKAKGMLQKNRRVLEKIVEELLEFEILSGKDLERMVDDNGGIREKEPFSLSKANYTEALSSSFLDQGNGAGPAL LGAST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G04340		EMB2458	embryo defective 2458, FtsH ex...		Potri.013G048700 [exp]	0	1
AT3G16620		ATTOC120	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.004G171600 [exp]	1.00	0.9044
AT2G15980			Tetratricopeptide repeat (TPR)...		Potri.004G149400 [exp]	2.82	0.8215
AT5G27330			Prefoldin chaperone subunit fa...		Potri.005G040500 [exp]	4.58	0.8053
AT4G22350			Ubiquitin C-terminal hydrolase...		Potri.006G010100 [exp]	7.14	0.7588
AT3G16620		ATTOC120	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.009G131200 [exp]	7.14	0.8409
AT3G02490			Pentatricopeptide repeat (PPR)...		Potri.004G108000 [exp]	9.94	0.7820
AT5G22760			PHD finger family protein (.1)		Potri.009G150200 [exp]	10.09	0.6748
AT5G27270		EMB976	EMBRYO DEFECTIVE 976, Tetratri...		Potri.019G049400 [exp]	11.48	0.8081
AT3G16290		EMB2083	embryo defective 2083, AAA-typ...		Potri.003G050600 [exp]	12.88	0.8449
AT1G27170			transmembrane receptors;ATP bi...		Potri.015G043501 [exp]	14.49	0.7833

Compare expression of checked genes

Potri.013G048700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.