Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50950 92 / 4e-19 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT1G58807 82 / 3e-16 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G59124 82 / 3e-16 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G59218 82 / 4e-16 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G58848 82 / 4e-16 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G58410 80 / 2e-15 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58390 80 / 2e-15 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G45490 75 / 3e-14 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G14470 75 / 7e-14 NB-ARC domain-containing disease resistance protein (.1) AT1G53350 74 / 1e-13 Disease resistance protein (CC-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G040800 [exp] 92 / 8e-20 AT5G45490 171 / 2e-49 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.005G119800 [exp] 87 / 1e-17 AT3G50950 1005 / 0.0 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) Potri.017G133666 [exp] 86 / 2e-17 AT3G14470 416 / 7e-129 NB-ARC domain-containing disease resistance protein (.1) Potri.004G196100 [exp] 85 / 6e-17 AT3G14470 647 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.017G133600 [exp] 83 / 2e-16 AT3G14470 424 / 4e-132 NB-ARC domain-containing disease resistance protein (.1) Potri.003G200200 [exp] 83 / 2e-16 AT3G14470 634 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.017G121500 [exp] 82 / 4e-16 AT3G14470 483 / 9e-153 NB-ARC domain-containing disease resistance protein (.1) Potri.017G137700 [exp] 79 / 4e-15 AT3G14470 437 / 7e-136 NB-ARC domain-containing disease resistance protein (.1) Potri.016G092600 [exp] 79 / 4e-15 AT3G50950 483 / 4e-158 HOPZ-ACTIVATED RESISTANCE 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014922 [exp] 86 / 5e-17 AT3G07040 523 / 1e-171 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10019530 [exp] 77 / 2e-14 AT3G07040 311 / 4e-95 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10018937 [exp] 73 / 4e-13 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10028639 [exp] 72 / 9e-13 AT3G07040 579 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10020016 [exp] 71 / 2e-12 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10024173 [exp] 68 / 1e-11 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10002945 [exp] 67 / 3e-11 AT3G07040 580 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10022351 [exp] 67 / 3e-11 AT3G14470 369 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Lus10039509 [exp] 66 / 9e-11 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10016316 [exp] 64 / 2e-10 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.013G056000.5 pacid=42811830 polypeptide=Potri.013G056000.5.p locus=Potri.013G056000 ID=Potri.013G056000.5.v4.1 annot-version=v4.1 ATGGCAGCAGACATGGCAGAGTTCCTCTGGAGGAAGTCTTTAAATGCTCTGCAAGAAGCAGAGACTGAATTATTTTTTCAATTCACTCTTGCTTCTCATT TTCGAAGAATTAAACAAGTGATGGAGAGTAAAAATATCAAAATATGTTTATCCCAGGCACCAAGCATCTGTGATATGCTTTATGACCTCAATGATGTACT TGTTGAGTGCCAGAGCTTTGCACACCAAAGGAAAGCACACAAAAAAAACAGGATACTTTTCATCCCTTCTATGGATCGTCGTTTTGTGGATAAGAGAAAG AAAAGGTTGGATGACATCAAAAAAAAGTTTTACGAAATGGTTGTGGATGGTGAGGGACAATCTATTCCTCTTAGAAATTCACCATTGAAATCTAGGGAAG GCAATGGGTCTGAAATTCTTGGGTTCGATGACAACATTAAAGAGATTGAGAGCATGCTTTTTGAAAATATATCTAATGAGAATGGTGTTGAATTCAAGAT AATAGGCATATGGGGAATGTGTGGCACTGGAAAATCCACACTTGCTAGTAAGGTTTTCAATAGTGAGAAAGTGAGCAGCCAGTTTTCAAGGAAGATCTGG ATTTGCTTATCTGGTATTCAGGGGGGTGAGAAAGACATGGGGATTGAGATTTGTAAGTTGATGTTGAAGGAGTTAGATTATGATATTGATGAATTAAAAA CAGATGATATTACTATGATGGAGCTTTCGCAGACCCTTCAGTGTCTATTAGCATACGAAAGGTATTTGATTGTGTTTGATGATGTGTGGCCCAGGCATGC CAACATCTTGGCCACAGACATTAGTTCAGCAGGGGTGCTTCCCAGAGGTTGTAATGGTACTGTCATTGTGACAACCAGGCTGCAGAAAGTGGCTACAAGA TTTGGAGCTGAGAAGATTCACCTTCCGCCCCCATTGATGAAACAGGGTTGTTGGAATATTTTTGAGCATACCGTTAAATCTGGCCTTTGCAACAAGTCTG AAATTGGGTTTGACCAATGCTTGCAGAAAATTGAGGACGAAGTTCAAGAAGATGGATTCAAGTTAATTGGGATATGTGGGGTGCGCAATGCAAGGAAAAC CACGCTTGCAAGAAAGGTTTTCGACAGTGTTTTGAGCAGAAAGTTCTCAAGGAAAATTTGGGTTTGCCTATCAGGTATTCAAAAGAATGATCAAGACATT GGGGCTAAGATTTTAAAGTTGGTTTTGGAAGGGCTAGATTATGATCTTAATGAATCAATAATAGATGATGATCTTACCGTGATCGAGCTCTTGGGCACTC TTAAGCATCTATTATCAAATGAAAACTATTTGATCGTATTTGATGATGTGTGGCCCTGGCATGCCAAGTTTTTGGCTGAAAAAACCATCTCGTCAGGGGG ATTGCCTAGGAATAGTGGTGGTGCAGTCATTGTCACATACAGACTGAAAGAAGTGGCTGAAGAGATAGGATGTATGAACGTGATTCACCTTCAGCATCCG GAACTGGAGGATTGCGGGAAGATTTTTCAGCGCACTCTTCAATACGATCCAGGAACATGGGAGAGGATTAAATTTGAAATCGAGTGCAAAATTGGTGATC TTCCATTAGCTGCCAAGACACTCGGGGAGATCTTTTTGGAGAAGATCCGAGAATCAGAGATTTCTTCCCCGACTTCTTGA
AA sequence Show only first row Show all	>Potri.013G056000.5 pacid=42811830 polypeptide=Potri.013G056000.5.p locus=Potri.013G056000 ID=Potri.013G056000.5.v4.1 annot-version=v4.1 MAADMAEFLWRKSLNALQEAETELFFQFTLASHFRRIKQVMESKNIKICLSQAPSICDMLYDLNDVLVECQSFAHQRKAHKKNRILFIPSMDRRFVDKRK KRLDDIKKKFYEMVVDGEGQSIPLRNSPLKSREGNGSEILGFDDNIKEIESMLFENISNENGVEFKIIGIWGMCGTGKSTLASKVFNSEKVSSQFSRKIW ICLSGIQGGEKDMGIEICKLMLKELDYDIDELKTDDITMMELSQTLQCLLAYERYLIVFDDVWPRHANILATDISSAGVLPRGCNGTVIVTTRLQKVATR FGAEKIHLPPPLMKQGCWNIFEHTVKSGLCNKSEIGFDQCLQKIEDEVQEDGFKLIGICGVRNARKTTLARKVFDSVLSRKFSRKIWVCLSGIQKNDQDI GAKILKLVLEGLDYDLNESIIDDDLTVIELLGTLKHLLSNENYLIVFDDVWPWHAKFLAEKTISSGGLPRNSGGAVIVTYRLKEVAEEIGCMNVIHLQHP ELEDCGKIFQRTLQYDPGTWERIKFEIECKIGDLPLAAKTLGEIFLEKIRESEISSPTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G50950		ZAR1	HOPZ-ACTIVATED RESISTANCE 1 (....		Potri.013G056000 [exp]	0	1
AT4G31980			unknown protein		Potri.003G208001 [exp]	2.64	0.7457
AT4G14770	CPP	ATTCX2	TESMIN/TSO1-like CXC 2 (.1)		Potri.008G156100 [exp]	5.09	0.6961	TSO1.2
AT5G26960			Galactose oxidase/kelch repeat...		Potri.009G066500 [exp]	5.29	0.6645
AT2G25280			unknown protein		Potri.006G258200 [exp]	5.74	0.7200
AT5G45160			Root hair defective 3 GTP-bind...		Potri.012G117300 [exp]	18.97	0.7252
AT1G73080		ATPEPR1, PEPR1	PEP1 receptor 1 (.1)		Potri.008G007600 [exp]	25.09	0.6983
AT5G11520		YLS4, ASP3	YELLOW-LEAF-SPECIFIC GENE 4, a...		Potri.006G241500 [exp]	28.46	0.6474
AT4G23650		CDPK6, CPK3	Calcium dependent protein kina...		Potri.003G134000 [exp]	38.18	0.6011
AT5G12330		LRP1	LATERAL ROOT PRIMORDIUM 1, Lat...		Potri.001G027700 [exp]	40.98	0.6627
AT4G13440			Calcium-binding EF-hand family...		Potri.019G027440 [exp]	43.24	0.6972

Compare expression of checked genes

Potri.013G056000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.