Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13540 235 / 5e-77 MYB ATMYB5, ATM2 myb domain protein 5 (.1) AT3G61250 205 / 2e-64 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) AT4G09460 195 / 2e-61 MYB ATMYB6, ATMYB8 myb domain protein 6 (.1) AT1G22640 193 / 2e-60 MYB AtMYB3 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) AT4G21440 196 / 3e-60 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT3G02940 195 / 3e-60 MYB ATMYB107 myb domain protein 107 (.1) AT4G38620 192 / 1e-59 MYB AtMYB4 myb domain protein 4 (.1) AT2G16720 191 / 2e-59 MYB AtY49, AtMYB7 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) AT5G10280 192 / 4e-59 MYB ATMYB92, AtMYB64 myb domain protein 92 (.1) AT5G15310 192 / 4e-59 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G056400 [exp] 493 / 1e-177 AT3G13540 226 / 2e-73 myb domain protein 5 (.1) Potri.019G036400 [exp] 388 / 4e-136 AT3G13540 236 / 3e-77 myb domain protein 5 (.1) Potri.019G036340 [exp] 385 / 4e-135 AT3G13540 240 / 6e-79 myb domain protein 5 (.1) Potri.019G036160 [exp] 377 / 1e-131 AT3G13540 236 / 4e-77 myb domain protein 5 (.1) Potri.003G219900 [exp] 270 / 2e-89 AT3G13540 243 / 1e-79 myb domain protein 5 (.1) Potri.001G005100 [exp] 266 / 4e-88 AT3G13540 247 / 1e-81 myb domain protein 5 (.1) Potri.002G173900 [exp] 215 / 1e-68 AT3G13540 207 / 4e-66 myb domain protein 5 (.1) Potri.014G100800 [exp] 211 / 4e-67 AT2G16720 207 / 3e-66 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Potri.001G086700 [exp] 200 / 5e-63 AT5G49330 203 / 6e-64 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039173 [exp] 236 / 6e-77 AT3G13540 244 / 3e-81 myb domain protein 5 (.1) Lus10013762 [exp] 233 / 2e-75 AT3G13540 241 / 1e-79 myb domain protein 5 (.1) Lus10016948 [exp] 196 / 3e-61 AT4G09460 301 / 1e-103 myb domain protein 6 (.1) Lus10030378 [exp] 196 / 7e-61 AT3G61250 341 / 8e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10000411 [exp] 194 / 1e-60 AT4G09460 300 / 5e-103 myb domain protein 6 (.1) Lus10041142 [exp] 195 / 2e-60 AT1G34670 315 / 2e-106 myb domain protein 93 (.1) Lus10009448 [exp] 194 / 2e-60 AT4G09460 290 / 2e-99 myb domain protein 6 (.1) Lus10036472 [exp] 195 / 3e-60 AT5G10280 307 / 1e-103 myb domain protein 92 (.1) Lus10014784 [exp] 193 / 9e-60 AT3G61250 342 / 1e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10001548 [exp] 192 / 1e-59 AT4G09460 291 / 2e-99 myb domain protein 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.013G056500.1 pacid=42810717 polypeptide=Potri.013G056500.1.p locus=Potri.013G056500 ID=Potri.013G056500.1.v4.1 annot-version=v4.1 ATGAGGAATCTATCCTCAAGGAACTCAACAAGGAGCAGGAATACACCCACACCATGTTGTAGCAAAGTGGGTATAAAGAGGGGGCCGTGGACACCTGAAG AAGATGAGATCTTGGCAAACTACATCAAGAAGGATGGTGAAGGGCGGTGGCGTACACTGCCAAAGCGGGCGGGGCTTCTTAGGTGTGGTAAGAGCTGCCG CCTCCGATGGATGAACTATCTCAGGCCTTCTGTTAAGAGAGGACGTATTGCCCCAGATGAAGAAGATCTCATTCTTAGGCTTCATAGGTTGCTTGGTAAC AGATGGTCTTTGATAGCTGGGAGGATACCAGGACGCACCGATAATGAGATCAAGAATTACTGGAACACCCATCTCAGCAAGAAGCTCATCAGTCAAGGAA TCGATCCAAGGACGCACAAGCCTTTATACCCTAACCCCAATTCATCAGAAATTGCCAATATCGCTCCCATCCAAAATTGTATCCTTAATTCTTTTCCACT AGAAGCGAATGGCGGGGTCTATCGAGCTACAGCCACTAGAGAAAATGAGAACTTTACAATGACTAACTTGGATCAGTTTCCAAATCAGGTCATTGATGAT GGTGCCAAAAACTGGCCTAGTTGTGATGGTTTTAATAAGGGGTTACAAAGTCATCATGAACAAAACAAAGAGGAAGATTACATTGGAAATGAAAATGAGG ACACGTTCTCTTTGTTTCTGGATTCTCTGATCAATGAAAATGTATTTGTGTATCAACAACAACAACAACAGTTACAGCAGCCTAAGATTATTGGACCATC TGGTGAACCTATGATTTCTTCTTCACAGGCTATTCATCATAGCAGCATTTCGGAAGCTGAAGTCGCATATTCCATGGCAGCTTTCGGTGAGAAAGATGGT GTGTTAAATAGTCATGATCTAGCTTGA
AA sequence Show only first row Show all	>Potri.013G056500.1 pacid=42810717 polypeptide=Potri.013G056500.1.p locus=Potri.013G056500 ID=Potri.013G056500.1.v4.1 annot-version=v4.1 MRNLSSRNSTRSRNTPTPCCSKVGIKRGPWTPEEDEILANYIKKDGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGRIAPDEEDLILRLHRLLGN RWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLYPNPNSSEIANIAPIQNCILNSFPLEANGGVYRATATRENENFTMTNLDQFPNQVIDD GAKNWPSCDGFNKGLQSHHEQNKEEDYIGNENEDTFSLFLDSLINENVFVYQQQQQQLQQPKIIGPSGEPMISSSQAIHHSSISEAEVAYSMAAFGEKDG VLNSHDLA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.013G056500 [exp]	0	1
AT3G60590			unknown protein		Potri.014G061000 [exp]	1.73	0.9706
AT5G23670		ATLCB2, LCB2	long chain base2 (.1.2)		Potri.015G103800 [exp]	2.44	0.9637	LJLCB2.1
AT4G02340			alpha/beta-Hydrolases superfam...		Potri.002G202700 [exp]	3.46	0.9564
AT1G10500		ATCPISCA	chloroplast-localized ISCA-lik...		Potri.007G079600 [exp]	3.46	0.9665
AT1G64970		VTE4, TMT1, G-T...	VITAMIN E DEFICIENT 4, gamma-t...		Potri.013G077000 [exp]	4.89	0.9576
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Potri.002G028700 [exp]	5.29	0.9449	VFCYSPRO.1
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.017G096600 [exp]	6.32	0.9512
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Potri.005G079600 [exp]	8.06	0.9466	Pt-ACT11.10
AT5G27280			Zim17-type zinc finger protein...		Potri.005G246200 [exp]	8.36	0.9534
AT3G56330			N2,N2-dimethylguanosine tRNA m...		Potri.013G093500 [exp]	9.94	0.9482

Compare expression of checked genes

Potri.013G056500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.