Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19790 106 / 2e-27 AP2_ERF RAP2.11 related to AP2 11 (.1) AT5G18560 59 / 6e-10 AP2_ERF PUCHI Integrase-type DNA-binding superfamily protein (.1) AT5G18450 58 / 1e-09 AP2_ERF DREB2G Integrase-type DNA-binding superfamily protein (.1) AT4G27950 58 / 2e-09 AP2_ERF CRF4 cytokinin response factor 4 (.1) AT4G11140 57 / 2e-09 AP2_ERF CRF1 cytokinin response factor 1 (.1) AT4G23750 57 / 3e-09 AP2_ERF TMO3, CRF2 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) AT1G75490 56 / 3e-09 AP2_ERF DREB2D Integrase-type DNA-binding superfamily protein (.1) AT5G13910 56 / 4e-09 AP2_ERF LEAFY PETIOLE (LEP) LEAFY PETIOLE, Integrase-type DNA-binding superfamily protein (.1) AT5G53290 57 / 5e-09 AP2_ERF CRF3 cytokinin response factor 3 (.1) AT2G33710 56 / 5e-09 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G036100 [exp] 338 / 9e-118 AT5G19790 98 / 3e-24 related to AP2 11 (.1) Potri.003G220200 [exp] 213 / 2e-68 AT5G19790 164 / 1e-49 related to AP2 11 (.1) Potri.001G004700 [exp] 187 / 3e-58 AT5G19790 112 / 1e-29 related to AP2 11 (.1) Potri.017G087800 [exp] 90 / 2e-20 AT5G19790 89 / 3e-20 related to AP2 11 (.1) Potri.008G091300 [exp] 81 / 2e-17 AT5G19790 80 / 5e-17 related to AP2 11 (.1) Potri.001G453100 [exp] 75 / 2e-15 AT5G19790 71 / 5e-14 related to AP2 11 (.1) Potri.002G153500 [exp] 71 / 3e-14 AT5G19790 79 / 6e-17 related to AP2 11 (.1) Potri.014G076702 [exp] 71 / 5e-14 AT5G19790 74 / 5e-15 related to AP2 11 (.1) Potri.011G148900 [exp] 67 / 9e-13 AT5G19790 65 / 5e-12 related to AP2 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013614 [exp] 144 / 2e-41 AT5G19790 148 / 6e-43 related to AP2 11 (.1) Lus10010652 [exp] 138 / 6e-39 AT5G19790 155 / 6e-46 related to AP2 11 (.1) Lus10013764 [exp] 94 / 2e-22 AT5G19790 132 / 6e-37 related to AP2 11 (.1) Lus10039171 [exp] 92 / 1e-21 AT5G19790 133 / 3e-37 related to AP2 11 (.1) Lus10001298 [exp] 84 / 4e-20 AT5G19790 118 / 1e-33 related to AP2 11 (.1) Lus10036793 [exp] 89 / 5e-20 AT5G19790 115 / 4e-29 related to AP2 11 (.1) Lus10030430 [exp] 88 / 1e-19 AT5G19790 115 / 1e-29 related to AP2 11 (.1) Lus10037137 [exp] 88 / 2e-19 AT5G19790 116 / 2e-29 related to AP2 11 (.1) Lus10012703 [exp] 87 / 3e-19 AT5G19790 119 / 3e-31 related to AP2 11 (.1) Lus10036556 [exp] 72 / 2e-15 AT5G19790 104 / 2e-28 related to AP2 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF00847 [poplar] [flax] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Potri.013G056700.1 pacid=42811297 polypeptide=Potri.013G056700.1.p locus=Potri.013G056700 ID=Potri.013G056700.1.v4.1 annot-version=v4.1 ATGGAAATTCATTTCCAGCAACAAAAGCAGCATAAAAATGCAAGCATTCCAGTTAGCAAAGCAAGCAAATTCAAGGGGAGAGGTAGGCCAAACAGCAACA GTAACAAGTTTGTTGGTGTTAGGCAAAGAACTTCTGGTAGATGGGTGGCTGAGATCAAAGACACAACACAAAAGATAAGGATGTGGCTAGGAACCTTTGA GACAGCTGAAGAAGCTGCACGAGCTTACGATGAAGCTGCTTGCCTGCTTCGTGGATCCAACACCCGAACCAACTTCATCACTCATGTGTCCGTGGATTCT CCTCTTGCTTCCCGGATTCGAAATCTCCTCAACAACAAAAGGAGAGACCAACAACAACATAGTGAAGAAGAAACTGCGGAAGCCTCTACTCCACCAACTA GTACCATTACTACCACAAGTAGTACTATCACCACTAGCAGCAGCAGCAGCAGCAGTTCTGGCATGAGTGATAATTACTCCAGTTCAATTCATGAAACGGA TCACTTGTTTGATGATGCATATAAACCGGATTTGCGCAATTGCATTGAGGAATTCAAGCTTGGTTCTTCTCAGTCTGATCTTTCACGGGGTTTTGGACCT TTATTCGATCGGTTTTCATATGCACAGGAAGTACTGGATTTTCCAAAAAGTGTGGTACTACCCGAGGCAAGTGACTCGGAATTCTCAGAATTTGATAGGA TGAAGGTGGAGAGACAGATATCAGCATCTCTATACGCAATTAATGGGGTTCAAGAGTACATGGAAGCTGTCTATGATCCTATTGAAGCTTTATGGGATCT TCCACCACTATAA
AA sequence Show only first row Show all	>Potri.013G056700.1 pacid=42811297 polypeptide=Potri.013G056700.1.p locus=Potri.013G056700 ID=Potri.013G056700.1.v4.1 annot-version=v4.1 MEIHFQQQKQHKNASIPVSKASKFKGRGRPNSNSNKFVGVRQRTSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFITHVSVDS PLASRIRNLLNNKRRDQQQHSEEETAEASTPPTSTITTTSSTITTSSSSSSSSGMSDNYSSSIHETDHLFDDAYKPDLRNCIEEFKLGSSQSDLSRGFGP LFDRFSYAQEVLDFPKSVVLPEASDSEFSEFDRMKVERQISASLYAINGVQEYMEAVYDPIEALWDLPPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Potri.013G056700 [exp]	0	1
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Potri.010G185900 [exp]	2.44	0.9692
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Potri.019G036100 [exp]	3.16	0.9661
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Potri.007G133000 [exp]	7.21	0.9530
AT1G76070			unknown protein		Potri.005G107500 [exp]	12.00	0.9560
AT1G49570			Peroxidase superfamily protein...		Potri.005G135300 [exp]	14.49	0.9344	PRX1.8
AT2G23770			protein kinase family protein ...		Potri.009G010300 [exp]	15.16	0.9515
AT1G77160			Protein of unknown function (D...		Potri.005G188100 [exp]	17.32	0.9432
AT4G10500			2-oxoglutarate (2OG) and Fe(II...		Potri.002G039600 [exp]	21.90	0.9461
AT5G05340			Peroxidase superfamily protein...		Potri.006G107000 [exp]	23.87	0.9399	PRX1.13
AT3G14470			NB-ARC domain-containing disea...		Potri.004G196100 [exp]	24.59	0.9425

Compare expression of checked genes

Potri.013G056700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.