Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-MYR1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04030 462 / 2e-162 GARP Homeodomain-like superfamily protein (.1.2.3) AT5G18240 444 / 7e-155 GARP MYR1, ATMYR1 ARABIDOPSIS MYB-RELATED PROTEIN 1, myb-related protein 1 (.1.2.3.4.5) AT4G13640 211 / 3e-65 GARP UNE16 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) AT1G69580 204 / 2e-62 GARP Homeodomain-like superfamily protein (.1.2) AT3G24120 202 / 8e-62 GARP Homeodomain-like superfamily protein (.1.2) AT1G79430 187 / 3e-55 GARP WDY, APL WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) AT5G45580 157 / 3e-45 GARP Homeodomain-like superfamily protein (.1) AT3G12730 146 / 2e-41 GARP Homeodomain-like superfamily protein (.1) AT2G01060 147 / 6e-41 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT5G29000 146 / 6e-40 GARP PHL1 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G032700 [exp] 748 / 0 AT3G04030 449 / 2e-157 Homeodomain-like superfamily protein (.1.2.3) Potri.017G054800 [exp] 232 / 3e-73 AT4G13640 338 / 6e-117 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Potri.001G314800 [exp] 227 / 2e-71 AT4G13640 345 / 2e-119 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Potri.008G087600 [exp] 224 / 3e-70 AT1G69580 276 / 2e-91 Homeodomain-like superfamily protein (.1.2) Potri.010G167901 [exp] 211 / 9e-65 AT1G69580 262 / 5e-86 Homeodomain-like superfamily protein (.1.2) Potri.008G081800 [exp] 182 / 2e-53 AT1G79430 335 / 6e-114 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Potri.010G174100 [exp] 179 / 2e-52 AT1G79430 356 / 4e-122 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Potri.001G133400 [exp] 173 / 7e-51 AT5G45580 220 / 2e-71 Homeodomain-like superfamily protein (.1) Potri.003G100100 [exp] 166 / 3e-48 AT5G45580 240 / 6e-79 Homeodomain-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002629 [exp] 608 / 0 AT3G04030 440 / 9e-154 Homeodomain-like superfamily protein (.1.2.3) Lus10020264 [exp] 606 / 0 AT3G04030 441 / 4e-154 Homeodomain-like superfamily protein (.1.2.3) Lus10037169 [exp] 224 / 1e-70 AT1G69580 252 / 9e-83 Homeodomain-like superfamily protein (.1.2) Lus10007132 [exp] 224 / 7e-70 AT4G13640 390 / 3e-137 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Lus10016676 [exp] 221 / 4e-69 AT4G13640 380 / 2e-133 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Lus10036758 [exp] 219 / 2e-68 AT1G69580 258 / 9e-85 Homeodomain-like superfamily protein (.1.2) Lus10001754 [exp] 182 / 2e-52 AT1G79430 292 / 2e-95 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Lus10001844 [exp] 182 / 2e-52 AT1G79430 286 / 3e-93 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Lus10012142 [exp] 166 / 4e-48 AT5G45580 215 / 2e-69 Homeodomain-like superfamily protein (.1) Lus10010404 [exp] 166 / 5e-48 AT5G45580 216 / 9e-70 Homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain CL0123 [poplar] [flax] PF14379 [poplar] [flax] Myb_CC_LHEQLE MYB-CC type transfactor, LHEQLE motif
Representative CDS sequence Show only first row Show all	>Potri.013G060200.6 pacid=42810760 polypeptide=Potri.013G060200.6.p locus=Potri.013G060200 ID=Potri.013G060200.6.v4.1 annot-version=v4.1 ATGTACCATCATCACCAGCATCAAGGAAAGAGCATCCACTCTTCTTCAAGAATGGCAATCCCTCCTGAAAGACATCTGTTCCTGCAAGGAGGGAATGGCC CTGGAGATTCTGGACTTGTCCTCTCAACTGATGCAAAGCCTAGACTAAAGTGGACACCAGATCTTCACGAGCGGTTCATAGAAGCAGTCAATCAGCTTGG AGGAGCAGACAAGGCCACTCCGAAAACAGTCATGAAACTTATGGGAATTCCTGGACTTACCTTGTACCACCTAAAGAGTCATCTTCAGAAGTACAGACTC AGCAAGAACCTTCATGGACAAGCTAATATTGGGAGCAGCAAAATTGGTACTGTTGCCGTGGTGGGAGATAGAATGCCTGAAGCAAATGCAACTCACATTA ACATTAACAATCTAAGCATCGGATCCCAACCAAATAAAAGCTTACATTTCAGTGAAGCACTACAGATGCAAATTGAAGTGCAAAGAAGGCTGCATGAACA GCTTGAGGTGCAGAGACATTTACAGCTCCGCATAGAAGCTCAAGGAAAATACCTACAGGCAGTGCTAGAGAAAGCCCAGGAAACCCTTGGAAGGCAAAAT TTAGGTACAGTGGGGCTTGAAGCTGCCAAAGTTCAACTCTCTGAACTGGTGTCCAAAGTGTCTACTCAATGCCTGAATTCCACATTTTCAGAGCTAAATG ATCTGCAGGGTCTGTGCCCGCAACAAACACCACCGACCCAGCCCAATGATTGTTCAATGGACAGCTGCCTGACCTCCTGTGAAGGTTCACAAAAGGAGCA AGAAATACACAACATTGGGATGGGGTTGAGGCCCTGTAATAGTAATGCTCTCTTAGAACCTAAAGAGATTGCTGAAGAACATGCATTGCAGCAAACTGAA CTCAAGTGGGGTGAATATCTAAGAGATAACAAAATGTTTCTAACCTCAATAGGACATGAGACAGAAAGGAGAACATTTTCTGCAGAAAGAAGCTGCAGTG ATTTATCCATTGGTGTTGGGCTCCAAGGAGAAAAGGGGAATATAAACAGTAGCTTTGCTGAGGGAAGATTTAAGGGAATGAGTGAGGATGATAGTTTTCA AGACCAGACTAACAAAAGGGCAGAGTCAGTTAAATATGAGGACGAGAAAATGTCACCAGGGTATAGATTGTCTTACTTCACAACCAAACTGGATCTGAAT TCCCATGACGAAATTGATGCAGCTTCAAGCTGCAAACAACTCGACTTGAATGGTTTCAGCTGGAACTGA
AA sequence Show only first row Show all	>Potri.013G060200.6 pacid=42810760 polypeptide=Potri.013G060200.6.p locus=Potri.013G060200 ID=Potri.013G060200.6.v4.1 annot-version=v4.1 MYHHHQHQGKSIHSSSRMAIPPERHLFLQGGNGPGDSGLVLSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL SKNLHGQANIGSSKIGTVAVVGDRMPEANATHININNLSIGSQPNKSLHFSEALQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQN LGTVGLEAAKVQLSELVSKVSTQCLNSTFSELNDLQGLCPQQTPPTQPNDCSMDSCLTSCEGSQKEQEIHNIGMGLRPCNSNALLEPKEIAEEHALQQTE LKWGEYLRDNKMFLTSIGHETERRTFSAERSCSDLSIGVGLQGEKGNINSSFAEGRFKGMSEDDSFQDQTNKRAESVKYEDEKMSPGYRLSYFTTKLDLN SHDEIDAASSCKQLDLNGFSWN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G04030	GARP		Homeodomain-like superfamily p...		Potri.013G060200 [exp]	0	1	Pt-MYR1.2
AT2G14520			CBS domain-containing protein ...		Potri.014G012400 [exp]	1.73	0.8949
AT5G15100		ATPIN8, PIN8	PIN-FORMED 8, Auxin efflux car...		Potri.004G124200 [exp]	2.00	0.9252
AT5G40270			HD domain-containing metal-dep...		Potri.008G190200 [exp]	2.64	0.8878
AT1G69510			cAMP-regulated phosphoprotein ...		Potri.010G167000 [exp]	3.74	0.8964
AT5G18170		GDH1	glutamate dehydrogenase 1 (.1)		Potri.013G058300 [exp]	3.87	0.8925	Pt-GDH1.2
AT3G60720		PDLP8	plasmodesmata-located protein ...		Potri.002G145400 [exp]	4.24	0.8924
AT4G10790			UBX domain-containing protein ...		Potri.015G080200 [exp]	4.89	0.8931
AT5G51970			GroES-like zinc-binding alcoho...		Potri.012G134900 [exp]	5.29	0.8691	NAD-SDH.1
AT1G10155		ATPP2-A10	phloem protein 2-A10 (.1)		Potri.012G120280 [exp]	5.47	0.8817
AT1G28200		FIP1	FH interacting protein 1 (.1)		Potri.002G184100 [exp]	7.74	0.8588

Compare expression of checked genes

Potri.013G060200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.