Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CAT3.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58030 873 / 0 CAT2 cationic amino acid transporter 2 (.1) AT5G36940 822 / 0 CAT3 cationic amino acid transporter 3 (.1) AT3G03720 736 / 0 CAT4 cationic amino acid transporter 4 (.1.2) AT5G04770 229 / 5e-67 CAT6, ATCAT6 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) AT1G05940 229 / 7e-67 CAT9 cationic amino acid transporter 9 (.1) AT4G21120 228 / 3e-66 CAT1, AAT1 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) AT2G34960 217 / 2e-62 CAT5 cationic amino acid transporter 5 (.1) AT3G10600 212 / 2e-60 CAT7 cationic amino acid transporter 7 (.1) AT1G17120 175 / 3e-47 CAT8 cationic amino acid transporter 8 (.1) AT3G04184 44 / 6e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G039700 [exp] 1047 / 0 AT1G58030 924 / 0.0 cationic amino acid transporter 2 (.1) Potri.019G039600 [exp] 812 / 0 AT3G03720 797 / 0.0 cationic amino acid transporter 4 (.1.2) Potri.015G133100 [exp] 238 / 6e-70 AT4G21120 845 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.012G131300 [exp] 234 / 1e-68 AT4G21120 848 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.013G030900 [exp] 227 / 9e-66 AT4G21120 833 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.013G030833 [exp] 227 / 9e-66 AT4G21120 833 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.008G017100 [exp] 215 / 2e-61 AT3G10600 778 / 0.0 cationic amino acid transporter 7 (.1) Potri.003G154600 [exp] 214 / 4e-61 AT2G34960 870 / 0.0 cationic amino acid transporter 5 (.1) Potri.003G083700 [exp] 213 / 4e-61 AT5G04770 509 / 7e-176 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005671 [exp] 949 / 0 AT1G58030 958 / 0.0 cationic amino acid transporter 2 (.1) Lus10020322 [exp] 930 / 0 AT1G58030 949 / 0.0 cationic amino acid transporter 2 (.1) Lus10001334 [exp] 895 / 0 AT1G58030 973 / 0.0 cationic amino acid transporter 2 (.1) Lus10020320 [exp] 893 / 0 AT1G58030 912 / 0.0 cationic amino acid transporter 2 (.1) Lus10013638 [exp] 888 / 0 AT1G58030 964 / 0.0 cationic amino acid transporter 2 (.1) Lus10005687 [exp] 741 / 0 AT3G03720 803 / 0.0 cationic amino acid transporter 4 (.1.2) Lus10020305 [exp] 735 / 0 AT1G58030 805 / 0.0 cationic amino acid transporter 2 (.1) Lus10023271 [exp] 230 / 5e-67 AT4G21120 902 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10001581 [exp] 233 / 2e-66 AT4G21120 915 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10042898 [exp] 223 / 9e-65 AT1G05940 763 / 0.0 cationic amino acid transporter 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF13520 [poplar] [flax] AA_permease_2 Amino acid permease CL0062 [poplar] [flax] APC PF13906 [poplar] [flax] AA_permease_C C-terminus of AA_permease
Representative CDS sequence Show only first row Show all	>Potri.013G065000.1 pacid=42812671 polypeptide=Potri.013G065000.1.p locus=Potri.013G065000 ID=Potri.013G065000.1.v4.1 annot-version=v4.1 ATGGGTTTTCTTGTTGGTTCACAAAACGGTGTGAGGGGTGGTGGTTGTTTTAGGAGTTTGATAAGGAGAAAACAGGTTGATTCTGTTCATTTTAAACGAC ATGGTCATCATCAATTAGCCAAGGAGTTGTCTGTTCCACACCTTATTGCTATTGGTGTTGGCTCAACTATTGGAGCTGGAATTTATATTCTTGTTGGAAC AGTTGCTAGGGAGCATTCTGGACCTGCTCTATTTATATCCTTTCTGATAGCTGGAATTGCTGCTGCTCTTTCAGCATTTTGCTATGCAGAACTTGCAAGT CGTTGTCCATCTGCCGGCAGTGCATATCATTATTCCTACATATGTGTTGGAGAAGGTGTTGCTTGGTTGATTGGCTGGGCTTTAATATTGGAATACACAA TTGGTGGTTCAGCAGTTGCTCGTGGCATATCCCCAAACCTAGCATTGTTCTTTGGAGGTCAGGACAGTCTACCATTTTTTCTGGCTCGTCAACATATACC TGGGCTTGATGTTGTGGTTGACCCTTGTGCTGCTGTTCTGGTATTGGTTGTCACTGGGCTCTTGTGCGTGGGAATAAAGGAGAGTACTCTGGCACAAGCT GTAGTAACCTCCATAAATGTGTGTGCCATGCTATTCATCATAATAGCTGGTAGTTATCTTGGCTTCAAGACTGGATGGGCTGGATATGAACTTCCTGCTG GGTACTTTCCTTTTGGGGTGGACGGGATGCTTGCAGGGTCTGCAACTGTCTTTTTTGCGTACATTGGTTTTGATTCAGTTGCCAGCACTGCTGAGGAGGT TAAAAATCCTCAGCGAGATTTACCTCTAGGCATTGGTCTCGCATTGTCTATTTGTTGTTGTTTGTATATGCTGGTCTCTGTTGTCATTGTTGGTCTGGTA CCTTATTATGCTATGGATCCTGATACCCCTATTTCCTCTGCATTCGCTGCATATGGGATGCAATGGGCAGCGTACTTAGTAGCTGCCGGAGCAGTTATGG CTCTCTGCTCAACATTGATGGGCTCAATACTTCCTCAGCCTCGAATTTTAATGGCAATGGCTAGAGATGGATTGCTGCCATCATTCTTTTCAGATATTAA TAAAAAGAGCCAAGTTCCTGTTAAGAGCACATTGGTGACTGGCTTAGGTTCTGCAGTACTGGCATTTTTTATGGATGTTTCACAATTAGCTGGGATGGTC AGTGTGGGAACGCTTCTGGCATTCACTATGGTAGCAATTTCTGTATTGATACTGAGATATGTACCACCAAATGAGGTGCCTTTTCCATCTTCACTTCAGG AGATTATTGATTCTGTGTCATTACGGTACAGTACAGGTAGCCCAGATGTCACTAAGGAAAAGTCTGGTTTTTATGCCGGTACCTCTATGGATAGCAATTT GCCTTTATTAGGCAAAGCAACAGCAATTGAATATCCAATAATTGTAGAACAAGAGGCTCAAGGCAATTTTGTTATAAATGAAGGGAGCAGGCGAAAAATT GCTGGCTGGACCATAACAGCCACATGTGTTGGGGCATTTCTCCTTGCTTATGCAGCTTCAGACTTGAATCTTCCTAGACTTCTTCGTTTTATAGTGTGTG GAATTGGTGGTGCACTTCTCCTTTTTGGTCTGATTGTGCTGACCTGTATAGAACAAGATGATGCGAGGCACACCTTTGGGCATTCAGGAGGTTTTATCTG CCCATTTGTTCCACTCCTTCCTATTGTCTGCTTTCTTGTCAACATCTACCTTTTGATTAATCTTGGTGCTGCCACTTGGACCCGTGTCTCTGTATGGCTT ATAGTTGGAGTGCTTGTATATACGTTCTATGGGCGGACACACAGCTCACTGCTGGATGCTGTCTATGTGCCTGCAACTCACGCTGATGAAATTTATCGCA GCTCGGGAGAAAGTTCAGCATAG
AA sequence Show only first row Show all	>Potri.013G065000.1 pacid=42812671 polypeptide=Potri.013G065000.1.p locus=Potri.013G065000 ID=Potri.013G065000.1.v4.1 annot-version=v4.1 MGFLVGSQNGVRGGGCFRSLIRRKQVDSVHFKRHGHHQLAKELSVPHLIAIGVGSTIGAGIYILVGTVAREHSGPALFISFLIAGIAAALSAFCYAELAS RCPSAGSAYHYSYICVGEGVAWLIGWALILEYTIGGSAVARGISPNLALFFGGQDSLPFFLARQHIPGLDVVVDPCAAVLVLVVTGLLCVGIKESTLAQA VVTSINVCAMLFIIIAGSYLGFKTGWAGYELPAGYFPFGVDGMLAGSATVFFAYIGFDSVASTAEEVKNPQRDLPLGIGLALSICCCLYMLVSVVIVGLV PYYAMDPDTPISSAFAAYGMQWAAYLVAAGAVMALCSTLMGSILPQPRILMAMARDGLLPSFFSDINKKSQVPVKSTLVTGLGSAVLAFFMDVSQLAGMV SVGTLLAFTMVAISVLILRYVPPNEVPFPSSLQEIIDSVSLRYSTGSPDVTKEKSGFYAGTSMDSNLPLLGKATAIEYPIIVEQEAQGNFVINEGSRRKI AGWTITATCVGAFLLAYAASDLNLPRLLRFIVCGIGGALLLFGLIVLTCIEQDDARHTFGHSGGFICPFVPLLPIVCFLVNIYLLINLGAATWTRVSVWL IVGVLVYTFYGRTHSSLLDAVYVPATHADEIYRSSGESSA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G58030		CAT2	cationic amino acid transporte...		Potri.013G065000 [exp]	0	1	Pt-CAT3.2
AT4G37030			unknown protein		Potri.007G042400 [exp]	7.21	0.7136
AT2G35060		KUP11	K+ uptake permease 11, K+ upta...		Potri.001G123800 [exp]	9.74	0.7513	KUP10.3
AT3G06810		IBR3	IBA-RESPONSE 3, acyl-CoA dehyd...		Potri.008G219000 [exp]	12.00	0.7751
AT5G01220		SQD2	sulfoquinovosyldiacylglycerol ...		Potri.016G112600 [exp]	14.42	0.7555	SQD2.1
AT4G08290			nodulin MtN21 /EamA-like trans...		Potri.005G176100 [exp]	25.21	0.7170
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.003G211800 [exp]	30.46	0.7379
AT1G01220		AtFKGP	Arabidopsis thaliana L-fucokin...		Potri.014G101400 [exp]	30.70	0.6990
AT1G70570			anthranilate phosphoribosyltra...		Potri.010G044900 [exp]	53.60	0.7103
AT2G45720			ARM repeat superfamily protein...		Potri.014G076500 [exp]	57.57	0.6734
AT4G21540		SPHK1	sphingosine kinase 1 (.1.2.3)		Potri.011G043500 [exp]	58.30	0.6556

Compare expression of checked genes

Potri.013G065000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.